mRNA_Ecto-sp13_S_contig1112.980.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1112.980.1
Unique NamemRNA_Ecto-sp13_S_contig1112.980.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: D8LRM6_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRM6_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 1.760e-54
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 3 
Query:  141 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 404
            MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA
Sbjct:    1 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 88
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A836CI24_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI24_9STRA)

HSP 1 Score: 152 bits (383), Expect = 1.220e-42
Identity = 71/88 (80.68%), Postives = 80/88 (90.91%), Query Frame = 3 
Query:  141 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 404
            MSARPVIKTSTM  DMQEAAIQVAQDAI+DNNLEK+IA+A+K  FE +YPS+WHCFVGRNFG FVTHE +KF+Y YIGQ+GVCLFSTA
Sbjct:    1 MSARPVIKTSTMPADMQEAAIQVAQDAIKDNNLEKEIAHAIKTNFERIYPSVWHCFVGRNFGSFVTHEQSKFIYFYIGQMGVCLFSTA 88
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A7S2STQ1_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STQ1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.750e-31
Identity = 56/88 (63.64%), Postives = 70/88 (79.55%), Query Frame = 3 
Query:  141 MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 404
            M+ARPVIK S+M PDMQE AIQ AQDAI   N E++IA A++   E ++P+ WH  VGRNFGCFVTHE +KF+Y YIGQ+GVC+F+TA
Sbjct:   29 MAARPVIKHSSMTPDMQEMAIQCAQDAIAAKNTEQEIAMAIRQNIETMFPATWHVLVGRNFGCFVTHEASKFIYFYIGQVGVCMFATA 116
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A7S1UG18_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UG18_9STRA)

HSP 1 Score: 117 bits (294), Expect = 5.430e-29
Identity = 49/82 (59.76%), Postives = 67/82 (81.71%), Query Frame = 3 
Query:  156 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFST 401
            V+K S M  +MQ+AA+Q+AQDAIR++  E++IA+A+K  FE +Y + WHCFVGRNFGC+VTH+   FVY YIGQ+G+CLF+T
Sbjct:   41 VVKASRMEQEMQDAAVQIAQDAIREHMTEQEIASAIKQQFESIYHTTWHCFVGRNFGCYVTHQENAFVYFYIGQLGICLFAT 122
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A7S1C452_9STRA (Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C452_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.680e-24
Identity = 46/82 (56.10%), Postives = 61/82 (74.39%), Query Frame = 3 
Query:  156 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFST 401
            ++K + M   M E AI VA  AI+  N EK+ A+A+KA  E L+P +WHCFVGR FGC+VTHE +KF+Y Y+GQ+GVCLFS+
Sbjct:   95 IVKLNQMETVMAERAIDVALRAIKSCNTEKETASAIKAQMEALFPGVWHCFVGRKFGCYVTHESSKFIYFYVGQLGVCLFSS 176
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A0R3WWJ5_HYDTA (Dynein light chain n=2 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WWJ5_HYDTA)

HSP 1 Score: 95.9 bits (237), Expect = 7.380e-21
Identity = 42/82 (51.22%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:  156 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFST 401
            V+K + MA DMQ+ A+  AQDA+   N+EKDIA  +K  F+ LY   WHC VGRNFG +VTHE   F+Y Y+GQ+ + LF +
Sbjct:   28 VVKNADMAEDMQQRAVDCAQDAMNKYNVEKDIAAHIKKEFDRLYSPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 109
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: U4LB13_PYROM (Dynein light chain n=1 Tax=Pyronema omphalodes (strain CBS 100304) TaxID=1076935 RepID=U4LB13_PYROM)

HSP 1 Score: 95.1 bits (235), Expect = 1.240e-20
Identity = 42/82 (51.22%), Postives = 57/82 (69.51%), Query Frame = 3 
Query:  159 IKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 404
            +K+  MA DM  AA +VA+ A+++NN+EKDIA  +K  F+  Y + WHC VGRNFG FVTHE   F+Y Y+G + V L+ TA
Sbjct:   24 VKSVDMAEDMAAAAQEVAKKAMKENNVEKDIAQMIKKEFDAKYGNTWHCIVGRNFGSFVTHETKHFIYFYVGNLAVLLYKTA 105
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: K3WKC4_GLOUD (Dynein light chain n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WKC4_GLOUD)

HSP 1 Score: 94.4 bits (233), Expect = 1.580e-20
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 3 
Query:  144 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPS-LWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA 404
            + +PV+KTSTM PD+Q+  I VAQ A+     E+ IA  VK  FE  Y   LWHC VGRN  C+VTHE +KF+Y YIGQ+ V LF+TA
Sbjct:    3 NVKPVVKTSTMDPDLQDEVILVAQHAMDTEIDEQQIAAKVKQHFEQKYHGMLWHCCVGRNVACYVTHEQSKFLYFYIGQMAVVLFATA 90
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A0R3WU97_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WU97_HYDTA)

HSP 1 Score: 93.6 bits (231), Expect = 3.350e-20
Identity = 41/82 (50.00%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:  156 VIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFST 401
            VIK + M  +MQ+ A+  AQDA+   N+EKDIA  +K  F+ LY   WHC VGRNFG +VTHE   F+Y Y+GQ+ + LF +
Sbjct:   11 VIKNADMVDEMQQRAVDCAQDAMEKFNIEKDIAAHIKKEFDKLYSPTWHCIVGRNFGSYVTHESKHFIYFYMGQVAILLFKS 92
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BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Match: A0A0R3WYJ9_HYDTA (Dynein light chain n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A0R3WYJ9_HYDTA)

HSP 1 Score: 93.6 bits (231), Expect = 3.350e-20
Identity = 41/86 (47.67%), Postives = 58/86 (67.44%), Query Frame = 3 
Query:  144 SARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYPSLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFST 401
            S + VIK + M+ +MQ+ A+  AQDA+   N+EKDIA  +K  F+ +Y   WHC VGRNFG +VTHE   F+Y Y+GQ+ + LF +
Sbjct:    7 SQKAVIKNADMSEEMQQKAVDCAQDAMEKFNIEKDIAAHIKKEFDRMYNPTWHCIVGRNFGSYVTHETKHFIYFYMGQVAILLFKS 92
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1112.980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRM6_ECTSI1.760e-54100.00Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A836CI24_9STRA1.220e-4280.68Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2STQ1_9STRA2.750e-3163.64Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S1UG18_9STRA5.430e-2959.76Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A7S1C452_9STRA5.680e-2456.10Dynein light chain n=1 Tax=Bicosoecida sp. CB-2014... [more]
A0A0R3WWJ5_HYDTA7.380e-2151.22Dynein light chain n=2 Tax=Hydatigena taeniaeformi... [more]
U4LB13_PYROM1.240e-2051.22Dynein light chain n=1 Tax=Pyronema omphalodes (st... [more]
K3WKC4_GLOUD1.580e-2054.55Dynein light chain n=1 Tax=Globisporangium ultimum... [more]
A0A0R3WU97_HYDTA3.350e-2050.00Dynein light chain n=1 Tax=Hydatigena taeniaeformi... [more]
A0A0R3WYJ9_HYDTA3.350e-2047.67Dynein light chain n=1 Tax=Hydatigena taeniaeformi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1112contigEcto-sp13_S_contig1112:16128..18636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score185.3
Seed ortholog evalue1.3e-44
Seed eggNOG ortholog2880.D8LRM6
Model size1035
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-12_000380.1
Cds size267
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.661183-UTR-Ecto-sp13_S_contig1112:16127..167551681462577.661183-UTR-Ecto-sp13_S_contig1112:16127..16755Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1112 16128..16755 -
1681462577.715282-UTR-Ecto-sp13_S_contig1112:18496..186361681462577.715282-UTR-Ecto-sp13_S_contig1112:18496..18636Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1112 18497..18636 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462577.6822433-CDS-Ecto-sp13_S_contig1112:16755..168671681462577.6822433-CDS-Ecto-sp13_S_contig1112:16755..16867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1112 16756..16867 -
1681462577.6930668-CDS-Ecto-sp13_S_contig1112:17771..178751681462577.6930668-CDS-Ecto-sp13_S_contig1112:17771..17875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1112 17772..17875 -
1681462577.7040818-CDS-Ecto-sp13_S_contig1112:18445..184961681462577.7040818-CDS-Ecto-sp13_S_contig1112:18445..18496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1112 18446..18496 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1112.980.1prot_Ecto-sp13_S_contig1112.980.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1112 16756..18496 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1112.980.1

>prot_Ecto-sp13_S_contig1112.980.1 ID=prot_Ecto-sp13_S_contig1112.980.1|Name=mRNA_Ecto-sp13_S_contig1112.980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
MSARPVIKTSTMAPDMQEAAIQVAQDAIRDNNLEKDIANAVKAAFEGLYP
SLWHCFVGRNFGCFVTHEHTKFVYLYIGQIGVCLFSTA*
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mRNA from alignment at Ecto-sp13_S_contig1112:16128..18636-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1112.980.1 ID=mRNA_Ecto-sp13_S_contig1112.980.1|Name=mRNA_Ecto-sp13_S_contig1112.980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2509bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1112:16128..18636- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGGTTTGCGTTTGTAACTGCCGGTGCATAGCACACCAGCGTGATAGCT
AGAAGCGCGACACCTGCAAGCAACGGCAACCTGCTTCGTCTCTGAGAAAC
GGTCACAGTTCTTTGGTGCTCACCCTATCCTTCGGGTATCATGTCTGCCA
GGCCAGTTATCAAGACGAGCACAATGGCACCAGATATGCAGGTGACGACC
AACTTATGCACAACGTACACAGTCCACAGCTGCATTCAAGATAGGCTTTC
TTCCGACGAGAAGTTGGGGTAATGTTGACGTATGCCGATCGAAATGAGTG
CGATATAATGCTTTCCACGTACGCAGGTCGGTGTAAAGTAGTGGGTCAAA
TTGCTTGTCATACCATTCCCTCGAACTCGTCACGCAGCACATTCAAGCGG
GATCAATGCCGACAAATCGCCGCTTCACACCTAGGCAGTGGCGCAGCGGC
CGGAATATGATTGAACGTATTGGAGCATGTGCATAGCTGCTCATACTTGC
CAAGGGCTGTTCTGCACTGATACGACTTCTGCGGCTGAGTACGATAGTTT
TGTATGCTCTGCGCGCGCGTTGTCCCCTTTTTTCAGCCATTGACAACATT
CCTAACGGCAGATAGTTGCTGCTTTCCGTTGAAGTCTGTAAACGTCCATG
TTCAACCTTTGAGAAGCCACTCCCAGAGAGGGCGCATGTGGTCGTTGGTT
CCCTACTGGCGCGTATAATGGCGTATCGCTTGTCTAACCATACGGGCCCG
CGGTCAAACAGGAGGCTGCAATCCAGGTTGCCCAGGACGCCATTCGCGAC
AACAATTTGGAGAAGGACATTGCAAACGCGGTGAAGGCCGCCTTTGAAGG
CCTTTATCCCTCTCTGTGAGTACGTGTAGCACACAAGCACGCACCTTTTT
GCAACACGCAAGATCCTGCAAGAATACAGATATCTTTGGAGGGGACGCCG
CGGGCTAAAGAGAGAACAGCTTTGTTGAGTACGTGGCGTTTGCGAAATGA
GCAAAGATAAACAGGGATCTGACACATCATGGCCTCCTCAAGGTGTTCAC
CCCTGCAGTTAGGTGGTTGTACTGATCACACGTCTTCGGTACTGTCAAAT
CCCGTAGAAACTCGTGTGGATGCGGGTTTACAAGTATCGCGCGTCATCGA
GCAGTACCTAATGCGCGTGAAGGTTGAACAACTTTATTCTCGACGACAGA
GTGCCGACCACTCGATTAGCGGCCCCGCAAATGACGATTTTTTCCGATTT
TTTCAAGAATCAAGTATTGCAGGGGACTGAGTTCCTGCACACTTAAAACA
TGTTCAGACCACAGGAAAGCGGTGTATTCACGTAGGAATGAAACTCTTCA
ATGTACAGTCTATTGGGATATTTGCAAATTCTCCTCCTTGCCTGCAGTAG
TCTCGCCTTCAAACCCGGTGGCATGGTCAATTTTTCGGGCTCATGGATCG
ACGTGACGCTAGCTTGAATGGTGATTTTCGAAAGGGTGGCAAACTCGGCT
CCATGGCCCGCAAGTAGTGATGAAACAATTACTTCTCACGAGATTCTCAA
CCCCATTGCGCAGAGGAATTCCTCTGTGACTTGACCGCCCGTCGCTCCTC
GGTACTTCGAAGAAGTGCCGAAGGAAAGTTTACACCGTAAGCAACATACA
GCACGGCGGAGAGAGCTATAGACAGAATGGTGAGACAATTGAAAAATGCC
AACAGTGCACAAATGTTGCGTCGAGAATTGCCTCTTACACACACACACCC
CATATCCATGATCCAACAGGTGGCACTGCTTTGTCGGCAGGAATTTTGGA
TGCTTCGTCACGCATGAGCACACAAAGTTTGTGTACTTGTACATCGGGCA
AATTGGCGTGTGCCTTTTCTCCACCGCATGACCACGAGAGGTCGCCATCT
CCCCTCTAGCCGCATCTGGAGTTCTCGCGACGGGTCTCCTGCAGAAAGGT
CTCGAGATTGTAAGCCATGGGCTATGGCGGAAGCTTGGCGAGTGTTACCA
CGTGCTAGTCAAAGGAACGACAAGAAAGAAGAGAGAGGTCTAAGTCAGCG
ATATCCACAACATTATCGTTGTTGTGGGCTGGTGTTCTGCTCACCGCCAA
GAACAGCTTTATCTGTGGGCCATGGTCGTTCAATGGGAATATGAGAACCA
AAACCAGCCCGTACCGTTGTAAGTGTGTTCAACCCTACACCTGTCGAAGT
TTCCCGGGACGTCAACCCCCGAAGCGTGAAGACTGCAACGTAGCCCATGT
AACTGACCAGGGTGAAGGCGCACGAATCTGTATTTGCTTGGCTGCAGCAC
TTCTGCTGTTCGTGGCAGTTTTGCGCCGAACATGCGTCCACAGACGATCG
ACATGTGCCGAGTGATGTTCCATTTTCTGCTAACCGTAAATAACGCAGGA
CTTGAGAATCCCGCGTGTTCGATCGTTTTCACGATTACTAAAGGAACCAT
CTTCAACGATTTCCTTCTGTTCTCATTGCAGCTGGTAGACTATTCTCAAT
CGATCCCGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1112:16128..18636-

>mRNA_Ecto-sp13_S_contig1112.980.1 ID=mRNA_Ecto-sp13_S_contig1112.980.1|Name=mRNA_Ecto-sp13_S_contig1112.980.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1112:16128..18636- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTGCCAGGCCAGTTATCAAGACGAGCACAATGGCACCAGATATGCA
GGAGGCTGCAATCCAGGTTGCCCAGGACGCCATTCGCGACAACAATTTGG
AGAAGGACATTGCAAACGCGGTGAAGGCCGCCTTTGAAGGCCTTTATCCC
TCTCTGTGGCACTGCTTTGTCGGCAGGAATTTTGGATGCTTCGTCACGCA
TGAGCACACAAAGTTTGTGTACTTGTACATCGGGCAAATTGGCGTGTGCC
TTTTCTCCACCGCATGA
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