mRNA_Ecto-sp13_S_contig11107.968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11107.968.1
Unique NamemRNA_Ecto-sp13_S_contig11107.968.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11107.968.1 vs. uniprot
Match: A0A6H5KXS5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS5_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 9.450e-14
Identity = 58/81 (71.60%), Postives = 61/81 (75.31%), Query Frame = 2 
Query:  377 MEDPADRQAAADGGVGAGVAKNVGAAADNASGARTTXXXXGSCSSSLKPAASVAGETAPTPAPAAGCFVPRTVTQQQSSNA 619
            MED ADRQAA D GV   VAK+VGAAA  A+GARTTXXXX       K   SVA ETAPTPAPAAGCF+PRTVTQ QSSNA
Sbjct:    1 MEDSADRQAAGDSGV---VAKDVGAAAGTANGARTTXXXXXXXXX-XKLMVSVAEETAPTPAPAAGCFLPRTVTQHQSSNA 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11107.968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXS5_9PHAE9.450e-1471.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11107contigEcto-sp13_S_contig11107:2064..4458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size620
Hectar predicted targeting categoryother localisation
Exons2
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462576.6771638-CDS-Ecto-sp13_S_contig11107:2063..23061681462576.6771638-CDS-Ecto-sp13_S_contig11107:2063..2306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11107 2064..2306 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462576.6911302-UTR-Ecto-sp13_S_contig11107:2306..26121681462576.6911302-UTR-Ecto-sp13_S_contig11107:2306..2612Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11107 2307..2612 -
1681462576.7028394-UTR-Ecto-sp13_S_contig11107:4388..44581681462576.7028394-UTR-Ecto-sp13_S_contig11107:4388..4458Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11107 4389..4458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11107.968.1prot_Ecto-sp13_S_contig11107.968.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11107 2064..2306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11107.968.1

>prot_Ecto-sp13_S_contig11107.968.1 ID=prot_Ecto-sp13_S_contig11107.968.1|Name=mRNA_Ecto-sp13_S_contig11107.968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MEDPADRQAAADGGVGAGVAKNVGAAADNASGARTTTTTTGSCSSSLKPA
ASVAGETAPTPAPAAGCFVPRTVTQQQSSNA
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mRNA from alignment at Ecto-sp13_S_contig11107:2064..4458-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11107.968.1 ID=mRNA_Ecto-sp13_S_contig11107.968.1|Name=mRNA_Ecto-sp13_S_contig11107.968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11107:2064..4458- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAGCCCGCTCGCTGCCTCTCTATCGCTCTCTCTGGGTAGCTTCCCAGC
AGTCCACATCCCACCCACAGGTGAGTCTTGGTCGGTGCCCACGGTCGAGG
TCGCCCGCGGGCAGCTTGAAAGGATTCGATCTGTTTTGCCCGCCGTGTTT
CTGCGGGAAGGGTTCGAACACCAGACGGACCAGTTGAAGCAACTCACCGA
CACACACATAATTCCTGTTCGGCATGCGAACAGGGGCTAGCCCCGCCGTC
GCCATGGCGCAAGAGAGAGAGAGGGAGAAACAAGTCGAGAGAGGGATTGA
GAGAGAGGAGAAGGCCCTGCCTCCGCCGTGCTGGTGTTCAATTGTTTTCA
ATCCCGCGCTCCAAATCTTTCCCTCTTGCATTTTTTCCCTCCGCAACCAT
GTCGCCAGAAATCGCACGGCGGGAACCAATAACGCAATCGATTGAACCAC
TACCCCAAGAACAGATCACCGCAGCTACCACTACCTCCCTTATCTAACCA
TCCCGGTGATTTCTACCCCATATTTCCCTGGCAAGAGGAAAGGGCGGGTG
GGAAAGGCTGCTCGACGTGGGCGGGAACTCTGTGTTCAAGTTTGGAGAGT
TTGGGCGCCAGCTCTGTCGGTCTCCCCTTTGGAGTCTTTCGAGGCCACTG
CTGTGCGCACACTGCTTGTGCGGCACGTTGTGAAGCCCTCCCGCCGTGCG
GTAGCGGTCTAGTTGCAAGGCTCCCTCTTGACTATTCTTTGTAAAGATCG
GTGTGGTCAACCTCCGGTTTTGTCCCTCGTTATAATGTACTGGCTTTGCT
GCGGGGTCTCGTCGACGCAGCCGCTGAACGAATATGTGTGCTGTGTCCTG
ACTGCATGTACCAGGGTGTTGTTGGCTACGTGACACATTTGCGATCTTCC
ATGGCAGGGGGTAGAGCAGACCGCGGAGCAGGTGTTAGCCGATCTTGCAC
CAGTTTGCTGCCGACGACCCCACGCATTGGCCCGCACGGTTGTGCGATAC
GCCACACCAGCATCAGCTTTCTGTTTCATTGCATTTCAAGAGAAGGACGT
GCACAACTTGCACAGAATTCACATTCTCGGCAATGTACAGCGGCACAAAC
AACACATTTTTTTTTTTTCTTGGCGGCAAATGTTTTTCCGCTCTTTCTCC
ACAAAGTATTTTTTTTCGCCCAGCCACTCTGACGATTGAGCAGTATTTAG
TAGGAAGAGACTCCCAGAAACATGGTACATAAGACACACGCATTGAATTC
TTGCATACGGTCTCGGAACCGGCTGAAATTCTTGGCCCGGACACGAACGT
GCTCCTCTCCTTCACTGCTGTCGAGTCGGTACATATACACTTGCTCAGCA
GAAAAATGCGTGGAACGAACACAGTTTTTGCTGGATCATCTGCTATAAGG
AAAGATTGCCGAATTCTGGAAACGATCCAAGCGCCGTGAGCACAACCAAC
CGCTCGCTATGCTACGTACATGGTTGTTGCTGATCCACCGGTATGTAGCC
AGGTATTCGTGCAGTCGAAACTTCGTGTTCCCCCGCTGGCGCTTCCGCTG
GCGGCGGAAAAATTGAATGTCCTCGTCTGTCTGTCTGTCTGTCTGTCTGT
CTGTCTCTCTCTCTCTCTCTCTCTCTCTAAACTTTCTTTGTCGCAAATTT
GATAACACCTAGCTGAACTCCCAGGCCCTATTCAACCTGAACTCTGTACA
CGTCGAGCGAGGAACTCGAGGTACAACATGACGAACGCCAGCCTTCAAAG
ATATTTTCGTCCTGTGAGTGCGTATTTTTTTGTCGGCAGCTGCCATTGTT
GTTAATTCGCTGACCCCACCCTCACCTTGGCCTGTGCATGTTTCAGCGCT
CGCAGCGGGGCCCAGAACGGCGGGAGCTTACACAAGGATGTATCGATAAG
TGCCTGTGGGGCTGAGACGGGCAGGGGCGTTGAGGGGGTGAGCAAAGCGG
TAGACAAGTTGGCAAGTGACAGCTGTGTGCGAAAGCCTAGCCGCAGAAAC
GAGTACGTTACTTGTCTTCAACGGATATTCTAGCGACACCGGCAGCATTC
CGGACAAGAGAACCATTTTCGGCGAGCGGGGGAAAACGGGAGACTCGGGG
GCGCTGGTGGTGTCGCACGCCGACGCCACCGAGGAGCCACTAGGGTTGGA
CGATGGAGGACCCAGCGGACAGACAAGCAGCCGCTGACGGTGGAGTTGGT
GCGGGAGTTGCGAAAAATGTCGGTGCTGCAGCGGATAATGCTAGCGGAGC
AAGGACTACGACGACGACGACAGGTAGCTGCAGCAGCAGCCTGAAGCCTG
CGGCATCGGTGGCGGGGGAGACAGCTCCGACACCCGCCCCCGCCGCCGGC
TGCTTTGTCCCGCGCACGGTCACCCAGCAACAAAGCAGTAACGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11107:2064..4458-

>mRNA_Ecto-sp13_S_contig11107.968.1 ID=mRNA_Ecto-sp13_S_contig11107.968.1|Name=mRNA_Ecto-sp13_S_contig11107.968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11107:2064..4458- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGACCCAGCGGACAGACAAGCAGCCGCTGACGGTGGAGTTGGTGC
GGGAGTTGCGAAAAATGTCGGTGCTGCAGCGGATAATGCTAGCGGAGCAA
GGACTACGACGACGACGACAGGTAGCTGCAGCAGCAGCCTGAAGCCTGCG
GCATCGGTGGCGGGGGAGACAGCTCCGACACCCGCCCCCGCCGCCGGCTG
CTTTGTCCCGCGCACGGTCACCCAGCAACAAAGCAGTAACGCT
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