mRNA_Ecto-sp13_S_contig11078.942.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11078.942.1
Unique NamemRNA_Ecto-sp13_S_contig11078.942.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: D8LNH8_ECTSI (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH8_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 2.460e-34
Identity = 59/60 (98.33%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK 180
            GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLE ADGEYRLVK
Sbjct:  237 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEHADGEYRLVK 296
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 7.880e-34
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK 180
            GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK
Sbjct:  406 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK 465
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A7S0FHF1_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FHF1_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.190e-15
Identity = 36/61 (59.02%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLE-QADGEYRLVK 180
            GML N  +LPLDRIHNNLKMF SG D+KYDK+  +L   L +LC + KLE   DG YR++K
Sbjct:  192 GMLANLGQLPLDRIHNNLKMFASGSDHKYDKTARQLSSFLQKLCKEEKLECGGDGMYRVLK 252
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A2R6W9W0_MARPO (Anaphase-promoting complex subunit 2 n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6W9W0_MARPO)

HSP 1 Score: 72.4 bits (176), Expect = 2.190e-13
Identity = 38/57 (66.67%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYR 171
            GMLTNF  LPLDRIHN LKMF+S  D  YDKSLP+LQ  L RL S+ KLE  +G YR
Sbjct:  801 GMLTNFESLPLDRIHNMLKMFVS--DPPYDKSLPQLQGFLARLVSEEKLEFREGSYR 855
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A7S0GLJ3_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GLJ3_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.450e-13
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQA-DGEYRLVK 180
            GML+N  +LPL+RIHN LKMF+SG D+KYDK+  +L  LL +LC + KLE   DG ++L+K
Sbjct:  400 GMLSNLGQLPLERIHNMLKMFVSGSDHKYDKTPQQLSVLLQKLCKEDKLEVGPDGMFKLLK 460
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A2P2KRW0_RHIMU (Anaphase-promoting complex subunit 2 n=4 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2KRW0_RHIMU)

HSP 1 Score: 68.2 bits (165), Expect = 6.740e-12
Identity = 37/60 (61.67%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK 180
            GMLTNFS +PLDRIHN LKMF    D  YDKSL +LQ  L  L S+ KLE  DG Y L K
Sbjct:  496 GMLTNFSSMPLDRIHNTLKMFCVA-DPPYDKSLQQLQSFLSGLVSEEKLELRDGVYSLKK 554
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: W1NHA0_AMBTC (Anaphase-promoting complex subunit 2 n=2 Tax=Amborella trichopoda TaxID=13333 RepID=W1NHA0_AMBTC)

HSP 1 Score: 67.8 bits (164), Expect = 9.290e-12
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRL 174
            GMLTNF  +PLDRIHN LKMF  G D  YDKSL +LQ  L  L S+ KLE  DG+Y L
Sbjct:  829 GMLTNFGTMPLDRIHNTLKMFC-GTDLHYDKSLQQLQSFLSGLISEEKLEFRDGQYML 885
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A7S4RA98_9STRA (Anaphase-promoting complex subunit 2 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RA98_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-11
Identity = 35/64 (54.69%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:    1 GMLTNFSK---LPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLE-QADGEYRLVK 180
            GML+N  +   LPLDRIHN LKMF++G D  YDKS  +L+  L +LC + KLE  ADG Y+LV+
Sbjct:  695 GMLSNLGRDGQLPLDRIHNYLKMFVTGSDQNYDKSPQQLRAFLQKLCREEKLECGADGMYKLVQ 758
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A0A199UML6_ANACO (Anaphase-promoting complex subunit 2 n=3 Tax=Ananas comosus TaxID=4615 RepID=A0A199UML6_ANACO)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-11
Identity = 36/60 (60.00%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYRLVK 180
            GMLTNF  +PLDRIHN LKMF    +  YDKSL +LQ  L  L SD KLE  DG Y L K
Sbjct:  714 GMLTNFGSMPLDRIHNTLKMFCVA-EPSYDKSLQQLQAFLSGLISDEKLEMKDGLYYLKK 772
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BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Match: A9RVI7_PHYPA (Anaphase-promoting complex subunit 2 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9RVI7_PHYPA)

HSP 1 Score: 66.2 bits (160), Expect = 3.230e-11
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:    1 GMLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQADGEYR 171
            GMLTNF  LPLDRIHN LKMF+S  D  YDK+L +LQ  L RL  + KLE  +G YR
Sbjct:  714 GMLTNFDSLPLDRIHNMLKMFVS--DPPYDKTLQQLQGFLGRLVGEEKLEFREGVYR 768
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11078.942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNH8_ECTSI2.460e-3498.33Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A6H5KJM3_9PHAE7.880e-34100.00Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A7S0FHF1_9STRA5.190e-1559.02Anaphase-promoting complex subunit 2 n=1 Tax=Minut... [more]
A0A2R6W9W0_MARPO2.190e-1366.67Anaphase-promoting complex subunit 2 n=3 Tax=March... [more]
A0A7S0GLJ3_9STRA5.450e-1355.74Anaphase-promoting complex subunit 2 n=1 Tax=Probo... [more]
A0A2P2KRW0_RHIMU6.740e-1261.67Anaphase-promoting complex subunit 2 n=4 Tax=Rhizo... [more]
W1NHA0_AMBTC9.290e-1262.07Anaphase-promoting complex subunit 2 n=2 Tax=Ambor... [more]
A0A7S4RA98_9STRA2.370e-1154.69Anaphase-promoting complex subunit 2 n=2 Tax=Dityl... [more]
A0A199UML6_ANACO2.370e-1160.00Anaphase-promoting complex subunit 2 n=3 Tax=Anana... [more]
A9RVI7_PHYPA3.230e-1161.40Anaphase-promoting complex subunit 2 n=1 Tax=Physc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11078contigEcto-sp13_S_contig11078:569..751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score125.6
Seed ortholog evalue8e-27
Seed eggNOG ortholog2880.D8LNH8
Preferred nameAPC2
Model size183
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons1
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGsKOG2165@1,KOG2165@2759
Cds size180
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.7911592-UTR-Ecto-sp13_S_contig11078:568..5711681462574.7911592-UTR-Ecto-sp13_S_contig11078:568..571Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11078 569..571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462574.8095937-CDS-Ecto-sp13_S_contig11078:571..7511681462574.8095937-CDS-Ecto-sp13_S_contig11078:571..751Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11078 572..751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11078.942.1prot_Ecto-sp13_S_contig11078.942.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11078 572..751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11078.942.1

>prot_Ecto-sp13_S_contig11078.942.1 ID=prot_Ecto-sp13_S_contig11078.942.1|Name=mRNA_Ecto-sp13_S_contig11078.942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
MLTNFSKLPLDRIHNNLKMFMSGGDNKYDKSLPELQQLLWRLCSDGKLEQ
ADGEYRLVK*
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mRNA from alignment at Ecto-sp13_S_contig11078:569..751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11078.942.1 ID=mRNA_Ecto-sp13_S_contig11078.942.1|Name=mRNA_Ecto-sp13_S_contig11078.942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11078:569..751+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGATGCTGACGAACTTCTCCAAGCTACCGCTGGACCGGATTCACAACAA
CCTCAAGATGTTCATGTCGGGGGGGGACAACAAGTACGACAAGTCGCTGC
CCGAGCTGCAGCAGCTGCTGTGGCGCTTGTGCTCGGACGGGAAGCTGGAG
CAGGCAGATGGAGAGTACCGCCTAGTCAAGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11078:569..751+

>mRNA_Ecto-sp13_S_contig11078.942.1 ID=mRNA_Ecto-sp13_S_contig11078.942.1|Name=mRNA_Ecto-sp13_S_contig11078.942.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11078:569..751+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGACGAACTTCTCCAAGCTACCGCTGGACCGGATTCACAACAACCT
CAAGATGTTCATGTCGGGGGGGGACAACAAGTACGACAAGTCGCTGCCCG
AGCTGCAGCAGCTGCTGTGGCGCTTGTGCTCGGACGGGAAGCTGGAGCAG
GCAGATGGAGAGTACCGCCTAGTCAAGTAA
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