mRNA_Ecto-sp13_S_contig11041.918.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11041.918.1
Unique NamemRNA_Ecto-sp13_S_contig11041.918.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: D7G697_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G697_ECTSI)

HSP 1 Score: 673 bits (1736), Expect = 6.350e-228
Identity = 370/491 (75.36%), Postives = 399/491 (81.26%), Query Frame = 1 
Query:    1 DKVCRFVEFFQEIFGGEVDIVVDEAESVVKCWWGRQRFHAASRIADCLEHGIRVCREGPWQPASFSLVQVRIPTRPAESGTSRLLLSAGVPHPSNDRLRALSVVYGIVAATVPVIWLKAQPPPPS---SGDGADVSLSGARHQDDGLPQSFAPPSVEVASDSVKLVQLWGLHDSVQAALDRLVAGPEDRLVVGPDKNAHRERISLRLGQRNLEQLASTGWVREVERRGAKVKLYQQSGTISVTRLHIIAASLAERLPHSVQLVDMVDAAVMRNVATRVNLEAFARAGGGVAGDIEVISVWESWCLLVVSPGEGAAEGTVGKVCKAISQAARRWAASHVSMPFESPTYEQQLLMYGKQLKNGRGQRGVEKEAKPSIMADLSRAVSKYGVDLWLDAFCLRGHVGEVAVKKAVEAVLRTELKQKYPGLLAKRRAADAPSSTVDGAGPPDLPPPKSQASAWGSGSFKNSAMAAGASPATGGLFGAPAVAAAGSKM 1464
            DKV RFVEFFQ +FG EVDIVVDEAESVVKCWWG     A +   D LEHGIRVCREGPWQPASFSL+Q RIPT PAESGTSRL+LSAGVPHPS+  LR LS VYGIVAA V V  LKAQP       SGDGAD+ LSGARH+ DGLPQSFAPPSVE ASD VK+ QLWGLHD+VQAALDRLV        VGPDKNA +E+ISLRLGQRNLEQLASTGW+R +ERR AKV+LYQQ GTI VTRLHIIAASL E LP SVQLVDM+DAAVMRNVAT  NLEAFARAGGGVAGDIEVI V ESW LLVV+PGE  AEGTV +VCKAI QAARRWA +HVS+P           MY KQL   R QRGVEK++KP I+ADLSRAVSK+GVDLWLDAFCLRGHVG++ VKKAVEAVLRT+LK+KYPGLLAK R  DAPSSTVDGAGPPDL PPKS+ASAW SGSF N A+AAGASPA GGL GAPA   AG KM
Sbjct:  292 DKVSRFVEFFQNVFG-EVDIVVDEAESVVKCWWGHGD-RAINTTVDYLEHGIRVCREGPWQPASFSLMQARIPTHPAESGTSRLVLSAGVPHPSDKWLRELSAVYGIVAANVKVNCLKAQPXXXXXXXSGDGADIGLSGARHRHDGLPQSFAPPSVEAASDRVKVAQLWGLHDNVQAALDRLV--------VGPDKNAVQEKISLRLGQRNLEQLASTGWIRTLERRRAKVELYQQRGTIRVTRLHIIAASLVEALPRSVQLVDMIDAAVMRNVATPANLEAFARAGGGVAGDIEVIPVRESWRLLVVAPGEEPAEGTVDRVCKAIGQAARRWADAHVSVPLNPQ-------MYVKQLHKNRWQRGVEKDSKPPIIADLSRAVSKHGVDLWLDAFCLRGHVGDMTVKKAVEAVLRTKLKKKYPGLLAKLRVPDAPSSTVDGAGPPDLSPPKSRASAWDSGSFSNFAIAAGASPAAGGLCGAPA--GAGPKM 763
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: D7G696_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G696_ECTSI)

HSP 1 Score: 642 bits (1657), Expect = 8.760e-219
Identity = 366/546 (67.03%), Postives = 395/546 (72.34%), Query Frame = 1 
Query:    1 DKVCRFVEFFQEIFGGEVDIVVDEAESVVKCWWGRQRFHAASRIADCLEHGIRVCREGPWQPASFSLVQVRIPTRPAESGTSRLLLSAGVPHPSNDRLRALSVVYGIVAATVPVIWLKAQPPPPSSGDGADVSLSGARHQDDGLPQSFAPPSVEVASDSVKLVQLWGLHDSVQAALDRLVAGPEDRLVVGPDKNAHRERISLRLGQRNLEQLASTGWVREVERRGAKVKLYQQSGTISVTRLHIIAASLAERLPHSVQLVDMVDAAVMRNVATRVNLEAFARAGGGVAGDIEVISVWESWCLLVVSPGEGAAEGTVGKVCKAISQAARRWAASHVSMPFESPTYEQQLLMYGKQLKNGRGQRGVEKEAKPSIMADLSRAVSKYGVDLWLDAFCLRGHVGEVAVKKAVEAVLRTELKQKYPGLLAKRRAADAPSSTVDGAGPPDLPPPKSQASAWGSGSFKNSAMAAGASPATGGLFGAPAVAAAGSKMSAXXXXXXXXXXXXXXXXXXXXXXXGGSCGDGVGAFPTFSFGTIASGPPARAWDMESF 1638
            DKV RFVEFFQ +FG EVDIVVDEAESVVKCWWG     A +   D LEHGIRVCREGPWQPASFSL+QVRIPTRPAESGTSRL+LSAGVPHPS+ RLR LS VYGIVAA                                         +V+ ASD VK+ QLWGLHD+VQAALDRLV        VGPDKNA +E+ISLRLGQRNLEQLASTGW+R +ERR AKV+LYQQ GTI VTRLHIIAASL E LP SVQLVDMVDAAVMRNVA R NLEAFARAGGGVAGDIEVI V ESW LLVV+PGE   EGT    CKAI QAARRWA +HVS+P           MY KQL   R QRGVEK++KP I+ADLSRAVSK+GVDLWLDAFCLRGHVGE+AVKKAVEAVLRT+LK+ YPGLLAKRR  DAPSSTVDGAGPPDL PPKS+A+AW SGSF +S  A+  S  T    GAPA AAAGSK S                        GGSCGDGVGAFP FSFGT ASGPPARAWDME+F
Sbjct:    8 DKVSRFVEFFQNVFG-EVDIVVDEAESVVKCWWGHGD-RAINTTVDYLEHGIRVCREGPWQPASFSLMQVRIPTRPAESGTSRLVLSAGVPHPSDKRLRELSAVYGIVAA-----------------------------------------NVKAASDRVKVAQLWGLHDNVQAALDRLV--------VGPDKNADQEKISLRLGQRNLEQLASTGWIRTLERRRAKVELYQQRGTIRVTRLHIIAASLVEALPRSVQLVDMVDAAVMRNVAARANLEAFARAGGGVAGDIEVIPVRESWRLLVVAPGEERVEGT----CKAIGQAARRWADAHVSVPLNPQ-------MYVKQLHKSRWQRGVEKDSKPPIIADLSRAVSKHGVDLWLDAFCLRGHVGEIAVKKAVEAVLRTKLKKNYPGLLAKRRVPDAPSSTVDGAGPPDLAPPKSRANAWDSGSFSSSGTASFPSRNT---TGAPAGAAAGSKTSGQSSAASPARARQAAGTAGHVGVGGGSCGDGVGAFPAFSFGTTASGPPARAWDMETF 488
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: A0A6H5KMZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMZ8_9PHAE)

HSP 1 Score: 443 bits (1139), Expect = 2.040e-144
Identity = 242/320 (75.62%), Postives = 260/320 (81.25%), Query Frame = 1 
Query:    1 DKVCRFVEFFQEIFGGEVDIVVDEAESVVKCWWGRQRFHAASRIADCLEHGIRVCREGPWQPASFSLVQVRIPTRPAESGTSRLLLSAGVPHPSNDRLRALSVVYGIVAATVPVIWLKAQPP-PPSSGDGADVSLSGARHQDDGLPQSFAPPSVEVASDSVKLVQLWGLHDSVQAALDRLVAGPEDRLVVGPDKNAHRERISLRLGQRNLEQLASTGWVREVERRGAKVKLYQQSGTISVTRLHIIAASLAERLPHSVQLVDMVDAAVMRNVATRVNLEAFARAGGGVAGDIEVISVWESWCLLVVSPGEGAAEGTVGKV 957
            DKV RFVEFFQ +FG EVDI VDEAESVVKCWWGR    AASR  D LEHGIRVCREGPWQ        VRIPTRPAESGTSRL+LSAGVP+PS+ RL ALS VYGIVAA+V    LKAQP  PPSSGDGADV LSGARH+ DGLPQSFAPPSVE A DSVK+ QLWGLHDSVQAALDRLV        VGPD NA  E+ISLRLGQRNL+QLASTGW+R V+RRGAKV+LYQQSG I VTRL +IAASLA+ LP SVQLVDM+DAAVMRNVA   NLE FARAGG VAGDIEVI V ESW +LVV+PGE AAEGTV +V
Sbjct:  214 DKVSRFVEFFQNVFG-EVDIAVDEAESVVKCWWGRSD-RAASRTVDYLEHGIRVCREGPWQ--------VRIPTRPAESGTSRLVLSAGVPYPSDKRLGALSAVYGIVAASVKANCLKAQPSSPPSSGDGADVGLSGARHRHDGLPQSFAPPSVEAAGDSVKVAQLWGLHDSVQAALDRLV--------VGPDNNADHEQISLRLGQRNLKQLASTGWIRTVKRRGAKVELYQQSGIIRVTRLCVIAASLAQALPRSVQLVDMIDAAVMRNVAAPANLEVFARAGGSVAGDIEVIPVRESWRVLVVAPGEEAAEGTVDRV 515
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: A0A6H5KI25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI25_9PHAE)

HSP 1 Score: 338 bits (868), Expect = 2.610e-108
Identity = 180/231 (77.92%), Postives = 190/231 (82.25%), Query Frame = 1 
Query:    1 DKVCRFVEFFQEIFGGEVDIVVDEAESVVKCWWGRQRFHAASRIADCLEHGIRVCREGPWQPASFSLVQVRIPTRPAESGTSRLLLSAGVPHPSNDRLRALSVVYGIVAATVPVIWLKAQPP-PPSSGDGADVSLSGARHQDDGLPQSFAPPSVEVASDSVKLVQLWGLHDSVQAALDRLVAGPEDRLVVGPDKNAHRERISLRLGQRNLEQLASTGWVREVERRGAKVKL 690
            DKV RFVEFFQ +FG EVDI VDEAESVVKCWWGR    AASR  D LEHGIRVCREGPWQ        VRIPTRPAESGTSRL+LSAGVP+PS+ +L ALS VYGIVAA+V    LKAQP  PPSSGDGADV LSGARH+ DGLPQSFAPPSVE ASDSVK+ QLWGLHD VQAALDRLVAGPED     PDKNA+RE +SLRLGQRNLEQLASTGWVREVERRGAK  L
Sbjct:    8 DKVSRFVEFFQNVFG-EVDIAVDEAESVVKCWWGRSD-RAASRTVDYLEHGIRVCREGPWQ--------VRIPTRPAESGTSRLVLSAGVPYPSDKQLGALSAVYGIVAASVKANCLKAQPSSPPSSGDGADVGLSGARHRHDGLPQSFAPPSVEAASDSVKVAQLWGLHDCVQAALDRLVAGPEDXXXXXPDKNAYREHVSLRLGQRNLEQLASTGWVREVERRGAKTCL 228
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: D8LBQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBQ2_ECTSI)

HSP 1 Score: 341 bits (874), Expect = 5.960e-104
Identity = 221/468 (47.22%), Postives = 276/468 (58.97%), Query Frame = 1 
Query:    4 KVCRFVEFFQEIFGGEVDIVVDEAESVVKCWWGRQRFHAASRIADCLEHGIRVCREGPWQPASFSLVQVRIPTRPAESGTSRLLLSA-GVPHPSNDRLRALSVVYGIVAATVPVIWLKAQPPPPSSGDGADVSLSGARHQDDGLPQSFAPPSVEVASDSVKLVQLWGLHDSVQAALDRLVAGPEDRLVVGPDKNAHRERISLRLGQRNLEQLASTGWVREVERRGAKVKLYQQSGTISVTRLHIIAASLAERLPHSVQLVDMVDAAVMRNVATRVNLEAFARAGGGVAGDIEVISVWESWCLLVVSPGEGAAEGTVGKVCKAISQAARRWAASHVSMPFESPTYEQQLLMYGKQLKNGRGQRGVEKEAKPSIMADLSRAVSKYGVDLWLDAFCLRGHVGEVAVKKAVEAVLRTELKQ-------------KYPGLLAKRRA-ADAPSS---TVDGAGPPDLPPPKSQA 1353
            K+ RFV+FF  +FG  V + +DE ES VK  W      A S +A  LEH ++V +EGPWQPA FSLVQVR+PT   +S TSR LLS     HPS  +L+ LS VYG+V A V    L+ QPP                  DDGLP+SFAPP+VE A + V   QLWGL+  VQAALD LV  P ++            R SL LGQR + QL  TGW+R V+  G KV L+Q+SGTI  T L  IA+SLA  LP SVQLVDM+DAA MRN+AT   LEAFA+AGGG  G+I+VI VWE+   LV+  GE  +E  VGKV  AIS+A R+WAA++VS+P ++     +  +  K         G   + KP ++ADLS AVS YGV+LWLD  CLR  V ++++K  VEAVL TE+ Q             KY  +LA   A AD PS    T   AG P L  P S+A
Sbjct:   63 KMSRFVQFFNSVFGEHVIVTIDETESFVKILWVAGGTIADS-VAGYLEHAMQVYQEGPWQPADFSLVQVRLPTHGEDSRTSRFLLSVVHTSHPSTKKLQELSAVYGVVGANVNTNCLRTQPP----------------SSDDGLPRSFAPPNVEAADEMV--AQLWGLNHGVQAALDCLVVCPCNK------------RKSLWLGQRRVRQLQKTGWLRTVK--GTKVVLHQRSGTIIATLLPSIASSLANALPRSVQLVDMIDAAAMRNLATPAQLEAFAQAGGGATGEIKVIPVWETSSALVLGLGEETSESAVGKVRNAISEAVRQWAATNVSVPLKANAAHMRQTVSWKN--------GSANDFKPPLVADLSHAVSAYGVNLWLDGCCLRARVEDLSIKATVEAVLFTEITQQAVXXXXXXXXXXKYLDVLAGATAVADRPSPAAVTTAAAGLPILALPPSEA 489
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: A0A6H5KWK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWK0_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 5.090e-37
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1 
Query: 1009 MPFESPTYEQQLLMYGKQLKNGRGQRGVEKEAKPSIMADLSRAVSKYGVDLWLDAFCLRGHVGEVAVKKAVEAVLRTELKQK 1254
            MP ESPTYEQQLLMYGKQLK GRG+R VEKEAKPSIMADLSRAVS +GVDLWLDAFCLRGHVG++ VKKAVEAVLRT+LKQK
Sbjct:    1 MPLESPTYEQQLLMYGKQLKKGRGRRAVEKEAKPSIMADLSRAVSHHGVDLWLDAFCLRGHVGDMTVKKAVEAVLRTKLKQK 82
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BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Match: A0A6H5KLB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB2_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 8.430e-19
Identity = 86/206 (41.75%), Postives = 96/206 (46.60%), Query Frame = -1 
Query: 1233 PSPVPAGSSTDAGVNIFGFAPARTA--APKTPLVAGEAPAAIAKLPKLSMSHALAGGPEAIVP---NENVGKAPTPSPQLP-------PTTXXXXXXXXXXXXLAGDAADDCA---------------DIFDPAAATAGAPKSPPVAGEAPAAIAEFLKLPEPHALA*LLGGGRSGGPAPSTVELGASAARRLARRPGYFCLSSVR 1769
            PS  PAGSS D G NIFG  P  T   AP  P V GE   A+ +L  L   H L GG +  +P   NEN G  P P+P  P       P                G AAD+                 +IF P                     A+ LKLPEPHALA LLG  RS GPAPSTVELGASA RRLARRPGY C S++R
Sbjct:  103 PSLFPAGSSDDDGANIFGLTPTGTGVGAPNAPAVVGEVVVAVPELLILPEPHTLDGGLDGGLPAVSNENDGTTPAPTPSPPLLPLLTYPAVAIAAAPAPPAAAEEGAAADEAVARSPIPAGSSTDVGVNIFGPXXXXXXXXXXXXXXXXXXXXXAKLLKLPEPHALAPLLGEARSAGPAPSTVELGASATRRLARRPGY-CHSNIR 307
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11041.918.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G697_ECTSI6.350e-22875.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G696_ECTSI8.760e-21967.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMZ8_9PHAE2.040e-14475.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI25_9PHAE2.610e-10877.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBQ2_ECTSI5.960e-10447.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KWK0_9PHAE5.090e-3787.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLB2_9PHAE8.430e-1941.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11041contigEcto-sp13_S_contig11041:11..5586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2264
Hectar predicted targeting categoryother localisation
Exons6
Cds size1449
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11041.918.1prot_Ecto-sp13_S_contig11041.918.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11041 3073..5554 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462572.660917-UTR-Ecto-sp13_S_contig11041:10..1931681462572.660917-UTR-Ecto-sp13_S_contig11041:10..193Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11041 11..193 +
1681462572.6796317-UTR-Ecto-sp13_S_contig11041:514..10121681462572.6796317-UTR-Ecto-sp13_S_contig11041:514..1012Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11041 515..1012 +
1681462572.6874218-UTR-Ecto-sp13_S_contig11041:1151..12471681462572.6874218-UTR-Ecto-sp13_S_contig11041:1151..1247Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11041 1152..1247 +
1681462572.698665-UTR-Ecto-sp13_S_contig11041:3066..30721681462572.698665-UTR-Ecto-sp13_S_contig11041:3066..3072Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11041 3067..3072 +
1681462572.732746-UTR-Ecto-sp13_S_contig11041:5554..55861681462572.732746-UTR-Ecto-sp13_S_contig11041:5554..5586Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11041 5555..5586 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462572.707274-CDS-Ecto-sp13_S_contig11041:3072..32461681462572.707274-CDS-Ecto-sp13_S_contig11041:3072..3246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11041 3073..3246 +
1681462572.7159607-CDS-Ecto-sp13_S_contig11041:3862..41591681462572.7159607-CDS-Ecto-sp13_S_contig11041:3862..4159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11041 3863..4159 +
1681462572.7235131-CDS-Ecto-sp13_S_contig11041:4576..55541681462572.7235131-CDS-Ecto-sp13_S_contig11041:4576..5554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11041 4577..5554 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11041.918.1

>prot_Ecto-sp13_S_contig11041.918.1 ID=prot_Ecto-sp13_S_contig11041.918.1|Name=mRNA_Ecto-sp13_S_contig11041.918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=483bp
MVDAAVMRNVATRVNLEAFARAGGGVAGDIEVISVWESWCLLVVSPGEGA
AEGTVGKVCKAISQAARRWAASHVSMPFESPTYEQQLLMYGKQLKNGRGQ
RGVEKEAKPSIMADLSRAVSKYGVDLWLDAFCLRGHVGEVAVKKAVEAVL
RTELKQKYPGLLAKRRAADAPSSTVDGAGPPDLPPPKSQASAWGSGSFKN
SAMAAGASPATGGLFGAPAVAAAGSKMSAQSSAASPARTRQTAGTAGHVG
VVGGSCGDGVGAFPTFSFGTIASGPPARAWDMESFGNFAIAAGASPATRG
VFGAAVLAGAKPKMLTPASVELPAGTGDGAAGTSSAAAPSSAAGAAGAAA
TATAGDVIGGRRGGDGAGDVPSFSFGTADRPPSRPPSSVRGSGEISSSGT
DEKNSPATASGGAMSAAARRRRQQRHEEREIQRWRWEEREMQQQQQQQQL
EGLDSSSRGGGRERTRRVARHRWQRLLMRRRR*
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mRNA from alignment at Ecto-sp13_S_contig11041:11..5586+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11041.918.1 ID=mRNA_Ecto-sp13_S_contig11041.918.1|Name=mRNA_Ecto-sp13_S_contig11041.918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5576bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11041:11..5586+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACAAGGTCTGTCGATTTGTCGAGTTCTTCCAGGAAATATTCGGAGGAGA
AGTCGATATCGTCGTCGATGAGGCCGAGAGCGTCGTGAAGTGTTGGTGGG
GACGGCAGCGTTTTCACGCCGCCAGCAGAATAGCGGATTGCCTAGAGCAT
GGCATCCGAGTTTGCCGGGAAGGGCCGTGGCAGGTGAGGTCGATCGAAAC
TGTCGGCACAGGACTTTAGCAGACCTCACAGCAGTTGATGAGAGCCAGGC
GCATCGAGAGTGCAGCTACAATGGCTCCAAATCCAACGCCGTGAGGGTAT
TTCTCGAGCTGACGGGAGCTTCCGATAGCTGAAGAAACGGCCTAGAACAT
GGAAGCGTACAAGAGCACTGGGAATATTTCACCTGTAAGCCTCTTCGGAG
CCCTATTAGCAAGGCCAATAACGCAACAAAAACAGACCTCTCCGCTACAC
CTCTGTTTCCCCCCCTGCACTCACGTGCGCCAACTTGGCGTTGTGCCCGT
TCAGCCGGCTAGCTTTTCGCTGGTGCAGGTGAGGATCCCCACGCGCCCCG
CAGAGAGCGGGACGTCGCGCCTGCTGCTCTCGGCCGGTGTGCCGCATCCA
TCGAACGACCGGCTAAGGGCGCTGTCTGTCGTCTACGGCATCGTGGCTGC
TACCGTCCCGGTGATTTGGTTGAAGGCCCAGCCGCCGCCGCCGTCATCAG
GCGATGGTGCCGATGTCAGCCTCAGCGGGGCGCGGCACCAAGATGACGGC
CTCCCTCAAAGCTTTGCTCCTCCTAGCGTGGAGGTGGCCAGTGACAGCGT
TAAGCTTGTGCAGCTGTGGGGGCTCCATGACAGTGTCCAGGCCGCCCTGG
ATCGCCTGGTTGCCGGACCAGAGGATCGTCTGGTTGTCGGGCCAGACAAG
AATGCACACCGAGAGCGTATTTCTCTGCGGCTCGGACAACGCAACCTGGA
ACAGCTCGCGAGCACCGGATGGGTCCGTGAGGTGGAGCGGCGAGGGGCAA
AGGTGAGCCGTACGAAAGTGCGCCGACGACGGTGCTACAGCAGAACCTCG
TGGTTTTGTCGACGATTCCCTGCCGCCCGTCGTCGTCTTCTTCTAAGTTG
CTGCGTGCGTTGCTCCCGTGTACATTATTCGTTCCTGAAAGGTGAAGCTA
TACCAGCAGAGCGGAACAATATCTGTTACGCGCCTGCACATCATCGCGGC
CTCTCTAGCGGAGCGCCTTCCACACTCTGTCCAGCTGGTGAGCCGTACTG
TATCTGATCTGCGCAGGACAACGTTAACCCCCGCAACGGCAAGCTTTCAG
GGCTGGCTCATGTCCAGGAGAGCAAAGTGCTTGTAACGAACGGGACGGGA
CGGGGGCATCATGCTGTAAAATGGCTGTCTCAGGAATGGAACGTGTCATG
CAACGAACTGTCGAGGATTTGCAAGGGTGTAGCGTGGCCGGGGGATGCTT
GGAAGCGCAAGTAGCATACATTGAAACGCCGCACACAGCTACCGCATGTA
CAAACTACTGTGTCCGCCGGCATGTTAAGGCACAGCGCAGGAAACCGGCC
GTCCAAACGGAATGGCACCAAACTCCCATACACTCCCCCCCCACTCACGG
TTGCTGTCTGCGGATGACTTTGTTGGAATGTCTGGCACCCCTGAGGGACT
GCAAATGCAAATTGACGCGGCGAAGGAGTTTGCTGATAAGTGGAGATTGT
CTGCCAACGTTAACAAGAGTGCCGTCATGGTATGCAACGAGGACAGGGAG
GGACCACTAGAACATAGATGGAAGTGGGGGATCAAGGAGATTGCAGTAGT
GGACCAGTACACATACCTCGGAGTAGAGATCGCAACAGACTGCTCGTGGA
ATGCACACATGTCCAAGGTAGCGGAAAAGGGCAAAGCACGAGCACGGAAG
CTGCACCCAATACTCGCAAACCGGCACCTCGATACACGCATCAAATTGAC
CGTTTTGAAGAGCGTAATCGTACCGCCGCTAGAGTATCCCGGAGAAGTGT
GGGAAGGGAATAACAAGGTTAGTCAAAGAGCTCGAGGCGGCGCAAATGAA
AGCAGCGAAAGTCATCCTAGGACGCTCCAAGCGCACATGTTATGCAGTCG
TTAGAGCAAAACTGGGGATCCGATCCCTACGATCGGGAAGAGACGCAAGG
AAGCTGACATGGCAGCGTCGCATGTGCGGTATCGAAGAGGAGAGGTTACC
GAGAATAGCTTGAGAGGCGGAGTAGGCAAAACAAGAAGAGGGGTAGACAG
CGCACGTAGTGGGTCAAGGATGTAGGTGACGTATGGAAGGGGTTCGAAAT
TGACGAAGGCGATACGTTGGATACGGAGGGTCTAAAAGGGTTCAAGGAGA
AGACATCTGTTGCCTTTGCGGATGGAGAAGAACAGAATCTAAGAAAAGAA
ATCAAGGATAAGGAAGGCAAAGAAGTGTACGGAATGTTGAAGAAAGGAAA
GTACCTACGTGGACCAATGGATGCAGGGACAAAGCTGAAGGTCGAATTCA
GGACCGGGGACATTGGCCTGCGAGAACGTAGCCGAAGATGTAGGAAGGTA
GAAGATGAAGACGCCAAGTTCAAATGTGATTGCGGCTCCGAGTGCGAAGA
CCGTGTTCGTGTAGTCGCGGAATGTCGGCTGTACAAGAAGGAGAGGGAAG
TGTACATGACTGAGCTGGAAAAAATAGAAGAAAAGTACCGGGAGATGTTT
GAGGCATGGGAAAGCCAGGAGAAGACGTTGGCTGTACTGAGGCATAGGAA
GTGTTTTGAAAAGGCGGGAAGTGATATCGGTAGGATAGATAGACTAGGGA
AGACGGTTTTGAGCCACCTTTGGCAAAGTAGGAAGAAACGATTGGCCATC
GGTGATCGGTCCTGTGGGAACAATGCTCCGTCCTCTCGAGGACGCGTGGT
CAATGGTCCAACCGCTAAGGCATGCAAAACATAGGAGTCCCCCCCCCCCC
CCCACTCACCTTTGCTGGGCACAACCAAACACCGTCTGTCTCTCTGGCTG
GCCTATCCTGTTGGCAGGTGGACACTGTCTCTCTGGCTGGCCTATCCTGT
TGGCAGGTGGACATGGTCGACGCGGCTGTTATGCGCAACGTGGCAACGCG
TGTCAACCTTGAAGCTTTCGCTCGAGCAGGAGGAGGTGTCGCCGGGGATA
TCGAGGTCATTTCCGTGTGGGAATCGTGGTGCTTGCTAGTGGTATCGCCC
GGCGAAGGGGCGGCGGAGGGCACGGTGGGCAAGGTGGTGAGTTGGCGGTA
GTTCGGCGTCTGTGGTGCTGGCATCGCCCACGTATAGTATGTAGGTGGAC
AACCACTTGTACTGTGTCAACATTAAGTGTAGCGTTATGCAATAGAGGTC
CCTGTGTAAGGCCGCTTGCTTAAGGTCGGTTGCTCTGTCGGAGGCCGGTG
CAAATCGCCTGGCACACATGAAGTATTCAAGCTTTCTCATCCTCTGATAA
GTGCCAGGTGCCCGATTCAAGGCCGGTGTTTTCCCTTGGACGACAGCGGC
CTTAAACAAAAACCTCTCTATGGTAGTCGTGTTTCCTTGTGGGAATTGGG
GTCTTGCCTTGCCCAGCCGTTCGTTCCAAGAGATTATGTTGTTCAAGCGT
CCTCGCGTTTCGCCTTTCTTTACCCGCCTTTACTACGCCCATGCAAAGGA
CCAACGATAGCTGCACAAGCTGACGCCAGATGGCTTGTGTTTTGGCGAAG
ACTGGCGGTAGCAGCCGATGAGTTGTCGCTACAGCAGGCGGGGAGAGTCT
TACGGTATGGTGTGCCGGTAAGCAACCCCGACTATACTAGGCTTTGCCTT
TCCACTTGCTTACCAGATCCTCCCGTCGCTGCTCGTCGTTTGCTCATGTA
AGTGCAAGGCCATCAGTCAAGCGGCGCGGCGGTGGGCTGCGAGTCACGTC
AGCATGCCCTTCGAGTCGCCGACGTACGAACAGCAGCTGCTGATGTACGG
AAAGCAGCTGAAAAATGGTCGCGGGCAACGTGGAGTTGAAAAGGAGGCCA
AGCCGTCGATCATGGCCGATCTGTCCCGGGCAGTCTCGAAGTATGGCGTC
GATCTGTGGCTCGACGCCTTCTGCCTGAGGGGGCACGTCGGGGAGGTCGC
TGTCAAGAAGGCTGTCGAGGCAGTTCTCCGAACCGAGCTCAAGCAAAAGG
TAAGCAGCAAGGCTCGCGTGACGTCTTCCGAAGCAGACGCAGCTTGGAGC
CCCAGCTTTGTGGTGCCCGGCTCGGATGCTGTGTGCGGCTGTACGGCAGA
CGAACCGCCACAGAATGGAAGAGCTAGATTATTAGGGCATGCGGGTTGAG
AGCGAATGGTGTGTGAATCGTGCCGAATTAGTAGTAACAAACTAGTGGTG
AGCCGTCGGCTGACTGTCGGTGGGGGTGCAGCCCAAGACATTGATGCGTC
CAACGGTAGCCGTGAGACAAGGCTAACGTTGCGGAGTTGCGAGTGGCTGA
CGCCGGCCCGGTCTTCCGTTCACCCGTGCCTTCTCTCTACCGTGCGTAAT
ACTCTCGCGCCCACTTCATAAAATGTATTGATGAACGAATTTCCCGCGCA
TATGTTGCTGTGGCAGTATCCTGGCCTTCTGGCCAAACGCCGCGCAGCCG
ATGCGCCGAGCTCGACCGTCGACGGCGCCGGACCTCCTGATCTCCCCCCG
CCTAAGAGTCAAGCGAGCGCATGGGGCTCGGGCAGCTTCAAGAACTCTGC
AATGGCTGCGGGCGCCTCTCCCGCCACTGGGGGGCTTTTCGGAGCTCCAG
CTGTGGCGGCAGCAGGGTCGAAGATGTCGGCGCAGTCGTCGGCAGCGTCT
CCGGCTAGAACAAGGCAGACGGCTGGTACTGCCGGACACGTGGGTGTTGT
TGGTGGTAGCTGCGGTGACGGTGTTGGTGCTTTTCCGACGTTCTCGTTCG
GGACGATAGCCTCTGGGCCGCCGGCGAGGGCATGGGACATGGAGAGCTTC
GGCAACTTTGCAATAGCGGCCGGCGCCTCTCCCGCCACCAGGGGTGTTTT
CGGAGCCGCGGTTCTGGCGGGAGCGAAACCGAAAATGTTGACGCCGGCAT
CGGTGGAGCTACCGGCGGGGACAGGGGACGGGGCTGCCGGTACTTCATCT
GCTGCCGCTCCCTCCTCCGCCGCTGGTGCTGCTGGTGCTGCTGCTACAGC
TACTGCCGGTGATGTGATAGGTGGGAGAAGAGGTGGCGATGGTGCTGGTG
ATGTTCCGTCATTCTCGTTTGGAACGGCCGATAGGCCGCCATCTAGGCCG
CCATCCAGTGTACGGGGCTCGGGCGAGATCAGCAGCTCCGGAACAGACGA
AAAAAACTCTCCCGCCACTGCGAGTGGAGGAGCGATGTCCGCAGCAGCGC
GGCGGCGGCGGCAACAGAGGCACGAGGAGAGGGAAATACAGCGGTGGCGG
TGGGAGGAGAGGGAGATGCAGCAGCAGCAGCAGCAGCAGCAGCTCGAGGG
CCTGGACAGCAGCTCCCGCGGAGGGGGGCGGGAGCGAACTCGTCGAGTGG
CGCGCCACCGGTGGCAGCGGCTGTTGATGCGGCGGCGGAGGTGAAGACGA
CGGCGGCAACACCGAAGGCGATCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11041:11..5586+

>mRNA_Ecto-sp13_S_contig11041.918.1 ID=mRNA_Ecto-sp13_S_contig11041.918.1|Name=mRNA_Ecto-sp13_S_contig11041.918.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11041:11..5586+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGACGCGGCTGTTATGCGCAACGTGGCAACGCGTGTCAACCTTGA
AGCTTTCGCTCGAGCAGGAGGAGGTGTCGCCGGGGATATCGAGGTCATTT
CCGTGTGGGAATCGTGGTGCTTGCTAGTGGTATCGCCCGGCGAAGGGGCG
GCGGAGGGCACGGTGGGCAAGGTGTGCAAGGCCATCAGTCAAGCGGCGCG
GCGGTGGGCTGCGAGTCACGTCAGCATGCCCTTCGAGTCGCCGACGTACG
AACAGCAGCTGCTGATGTACGGAAAGCAGCTGAAAAATGGTCGCGGGCAA
CGTGGAGTTGAAAAGGAGGCCAAGCCGTCGATCATGGCCGATCTGTCCCG
GGCAGTCTCGAAGTATGGCGTCGATCTGTGGCTCGACGCCTTCTGCCTGA
GGGGGCACGTCGGGGAGGTCGCTGTCAAGAAGGCTGTCGAGGCAGTTCTC
CGAACCGAGCTCAAGCAAAAGTATCCTGGCCTTCTGGCCAAACGCCGCGC
AGCCGATGCGCCGAGCTCGACCGTCGACGGCGCCGGACCTCCTGATCTCC
CCCCGCCTAAGAGTCAAGCGAGCGCATGGGGCTCGGGCAGCTTCAAGAAC
TCTGCAATGGCTGCGGGCGCCTCTCCCGCCACTGGGGGGCTTTTCGGAGC
TCCAGCTGTGGCGGCAGCAGGGTCGAAGATGTCGGCGCAGTCGTCGGCAG
CGTCTCCGGCTAGAACAAGGCAGACGGCTGGTACTGCCGGACACGTGGGT
GTTGTTGGTGGTAGCTGCGGTGACGGTGTTGGTGCTTTTCCGACGTTCTC
GTTCGGGACGATAGCCTCTGGGCCGCCGGCGAGGGCATGGGACATGGAGA
GCTTCGGCAACTTTGCAATAGCGGCCGGCGCCTCTCCCGCCACCAGGGGT
GTTTTCGGAGCCGCGGTTCTGGCGGGAGCGAAACCGAAAATGTTGACGCC
GGCATCGGTGGAGCTACCGGCGGGGACAGGGGACGGGGCTGCCGGTACTT
CATCTGCTGCCGCTCCCTCCTCCGCCGCTGGTGCTGCTGGTGCTGCTGCT
ACAGCTACTGCCGGTGATGTGATAGGTGGGAGAAGAGGTGGCGATGGTGC
TGGTGATGTTCCGTCATTCTCGTTTGGAACGGCCGATAGGCCGCCATCTA
GGCCGCCATCCAGTGTACGGGGCTCGGGCGAGATCAGCAGCTCCGGAACA
GACGAAAAAAACTCTCCCGCCACTGCGAGTGGAGGAGCGATGTCCGCAGC
AGCGCGGCGGCGGCGGCAACAGAGGCACGAGGAGAGGGAAATACAGCGGT
GGCGGTGGGAGGAGAGGGAGATGCAGCAGCAGCAGCAGCAGCAGCAGCTC
GAGGGCCTGGACAGCAGCTCCCGCGGAGGGGGGCGGGAGCGAACTCGTCG
AGTGGCGCGCCACCGGTGGCAGCGGCTGTTGATGCGGCGGCGGAGGTGA
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