mRNA_Ecto-sp13_S_contig11020.906.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11020.906.1
Unique NamemRNA_Ecto-sp13_S_contig11020.906.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11020.906.1 vs. uniprot
Match: A0A6H5JDT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDT1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 3.760e-32
Identity = 91/165 (55.15%), Postives = 104/165 (63.03%), Query Frame = 1 
Query:    1 MDAPAEQGGVIQRSPETQLALPSIAGSSQREQRQRSSRRQSQASGNGRDGIEGGGSDSPRLSQYYDDDSDELWVDDSVASTKKRCWSRSTMEQWHRDWHDNGFALEEAYGKCHNALCGQVFCFAGSYACLAAGAQPSTYDRGPFGIELVKYSDKLLQSSRNNGLG 495
            MDA A+QGGVIQ +PETQLALPSIAGSSQREQRQRSSRRQSQASG G DGIEGGGSDSPRLSQ  DDDS E W DDSV +TKKR  S+S       DW D+    +  YG  + +  G              G  P   DR   G +L+   D+LL++  N  LG
Sbjct:    1 MDASAKQGGVIQHAPETQLALPSIAGSSQREQRQRSSRRQSQASGYGGDGIEGGGSDSPRLSQDSDDDSAEFWADDSVVATKKR--SKSPFGAV-TDWVDDYRTRKSGYGPPYYSEYG--------------GDLPGECDR--MGADLIDV-DELLRNGANPNLG 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11020.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JDT1_9PHAE3.760e-3255.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11020contigEcto-sp13_S_contig11020:1578..2660 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size621
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionGamma-tocopherol methyltransferase
Ec32 orthologEc-18_000910.2
Cds size546
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.3087416-UTR-Ecto-sp13_S_contig11020:1577..16521681462571.3087416-UTR-Ecto-sp13_S_contig11020:1577..1652Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11020 1578..1652 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462571.317238-CDS-Ecto-sp13_S_contig11020:1652..21091681462571.317238-CDS-Ecto-sp13_S_contig11020:1652..2109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11020 1653..2109 -
1681462571.3252275-CDS-Ecto-sp13_S_contig11020:2571..26601681462571.3252275-CDS-Ecto-sp13_S_contig11020:2571..2660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11020 2572..2660 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11020.906.1prot_Ecto-sp13_S_contig11020.906.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11020 1653..2660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11020.906.1

>prot_Ecto-sp13_S_contig11020.906.1 ID=prot_Ecto-sp13_S_contig11020.906.1|Name=mRNA_Ecto-sp13_S_contig11020.906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=182bp
MDAPAEQGGVIQRSPETQLALPSIAGSSQREQRQRSSRRQSQASGNGRDG
IEGGGSDSPRLSQYYDDDSDELWVDDSVASTKKRCWSRSTMEQWHRDWHD
NGFALEEAYGKCHNALCGQVFCFAGSYACLAAGAQPSTYDRGPFGIELVK
YSDKLLQSSRNNGLGTYPLVLSVFHTKSHPT*
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mRNA from alignment at Ecto-sp13_S_contig11020:1578..2660-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11020.906.1 ID=mRNA_Ecto-sp13_S_contig11020.906.1|Name=mRNA_Ecto-sp13_S_contig11020.906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11020:1578..2660- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTCCCGCGGAACAAGGCGGGGTGATACAACGTTCGCCCGAAAC
GCAACTTGCCTTGCCCAGCATCGCTGGCAGCAGTCAGAGGTAGGAGATAT
ATCACCGTGCGCACGGAGAATCCACACTTTGGTGCTAGTACATTGGGTGG
TATCGCAAGAGTGCATTTGTCCGCGACCACTTAAAAGGCGAGGCAAGGTG
ACAGCGGTTATGTATATTCGCCGATGTTCGATTCCAGCATGCCCCAACGT
GCACACACGCTGTTCTTTGTTGAGCGAACCTTGGTGGTGTTGAGCTACCG
GCGAGGGACAACCCCTGGCAATGACTGGCCCTTGGGGGGCATACCAAGGC
TCTGGAAACAACTTTAGTAGCTCAGACGGAAAGTGGAGATGGAATTGTTT
GCTCTGTACCACCACCTACGTCAAAGAAGTATCCCGCATCACTGGACTGA
CACGCAGCGGCCTAAATATCCGCGCTCGGCCAGCTTGCACGAAAGTATAT
GCCCGCGACAAACGCGCTGATTGTAAGCTGGCGCATTGCTAACGTTGACA
GGGAACAAAGACAGAGAAGTTCGAGGCGCCAGTCGCAAGCTTCCGGTAAT
GGACGTGACGGCATCGAGGGTGGGGGAAGTGATTCGCCACGCCTCTCTCA
ATACTACGATGACGATTCCGATGAGTTATGGGTCGACGATTCGGTGGCGT
CTACCAAAAAGAGGTGCTGGTCACGATCTACGATGGAACAGTGGCATAGA
GATTGGCACGACAATGGGTTTGCTCTTGAAGAAGCTTATGGCAAGTGTCA
CAATGCTTTGTGCGGGCAAGTTTTTTGTTTCGCTGGAAGTTACGCTTGTC
TCGCGGCTGGAGCACAACCATCCACTTACGACAGAGGGCCCTTTGGCATT
GAGTTAGTTAAGTACAGCGACAAACTGCTGCAATCTTCTAGAAATAATGG
TCTTGGTACTTATCCTCTGGTACTCTCCGTATTCCACACAAAATCCCACC
CCACATAGACTAACCTGGTGGTTCTCCTATTTGCGCGGCTCAACACGAGC
CCGGAACATGGATAAATACTCTCAGAGCACGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11020:1578..2660-

>mRNA_Ecto-sp13_S_contig11020.906.1 ID=mRNA_Ecto-sp13_S_contig11020.906.1|Name=mRNA_Ecto-sp13_S_contig11020.906.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11020:1578..2660- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTCCCGCGGAACAAGGCGGGGTGATACAACGTTCGCCCGAAAC
GCAACTTGCCTTGCCCAGCATCGCTGGCAGCAGTCAGAGGGAACAAAGAC
AGAGAAGTTCGAGGCGCCAGTCGCAAGCTTCCGGTAATGGACGTGACGGC
ATCGAGGGTGGGGGAAGTGATTCGCCACGCCTCTCTCAATACTACGATGA
CGATTCCGATGAGTTATGGGTCGACGATTCGGTGGCGTCTACCAAAAAGA
GGTGCTGGTCACGATCTACGATGGAACAGTGGCATAGAGATTGGCACGAC
AATGGGTTTGCTCTTGAAGAAGCTTATGGCAAGTGTCACAATGCTTTGTG
CGGGCAAGTTTTTTGTTTCGCTGGAAGTTACGCTTGTCTCGCGGCTGGAG
CACAACCATCCACTTACGACAGAGGGCCCTTTGGCATTGAGTTAGTTAAG
TACAGCGACAAACTGCTGCAATCTTCTAGAAATAATGGTCTTGGTACTTA
TCCTCTGGTACTCTCCGTATTCCACACAAAATCCCACCCCACATAG
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