mRNA_Ecto-sp13_S_contig11018.900.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11018.900.1
Unique NamemRNA_Ecto-sp13_S_contig11018.900.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11018.900.1 vs. uniprot
Match: D7FHS6_ECTSI (Heat shock protein 40 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS6_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 2.000e-46
Identity = 84/86 (97.67%), Postives = 85/86 (98.84%), Query Frame = 1 
Query:    1 GFPVVGGEGDRGSLVIDFEVDFPSRLREAHLAALRVVLTEEEIALLEDVLKLMSTRKSKARPPMEPLEYLYTRNCSSDDEDDFINN 258
            GFPVVGG+GDRGSLVIDFEVDFPSRLREAHLAALRVVLTEEEIALLEDVLKLMSTRKSKARPPMEPLEYLYTR CSSDDEDDFINN
Sbjct:  417 GFPVVGGDGDRGSLVIDFEVDFPSRLREAHLAALRVVLTEEEIALLEDVLKLMSTRKSKARPPMEPLEYLYTRICSSDDEDDFINN 502
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11018.900.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHS6_ECTSI2.000e-4697.67Heat shock protein 40 n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11018contigEcto-sp13_S_contig11018:1288..2250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size259
Hectar predicted targeting categoryother localisation
Exons2
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.926323-CDS-Ecto-sp13_S_contig11018:1287..14581681462570.926323-CDS-Ecto-sp13_S_contig11018:1287..1458Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11018 1288..1458 +
1681462570.9371011-CDS-Ecto-sp13_S_contig11018:2163..22501681462570.9371011-CDS-Ecto-sp13_S_contig11018:2163..2250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11018 2164..2250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11018.900.1prot_Ecto-sp13_S_contig11018.900.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11018 1288..2250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11018.900.1

>prot_Ecto-sp13_S_contig11018.900.1 ID=prot_Ecto-sp13_S_contig11018.900.1|Name=mRNA_Ecto-sp13_S_contig11018.900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
GFPVVGGEGDRGSLVIDFEVDFPSRLREAHLAALRVVLTEEEIALLEDVL
KLMSTRKSKARPPMEPLEYLYTRNCSSDDEDDFINN
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mRNA from alignment at Ecto-sp13_S_contig11018:1288..2250+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11018.900.1 ID=mRNA_Ecto-sp13_S_contig11018.900.1|Name=mRNA_Ecto-sp13_S_contig11018.900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=963bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11018:1288..2250+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTTCCAGTTGTGGGAGGGGAGGGGGATAGGGGGTCCCTCGTGATCGA
CTTTGAGGTGGACTTTCCGTCGAGGTTGCGGGAGGCTCACCTTGCGGCCC
TTCGGGTCGTGCTAACGGAGGAGGAGATCGCCCTCCTGGAGGACGTTCTG
AAGCTCATGTCGACGAGGAAGGTGCGTGGGAGGTCTTGGCGCTGAAGACG
GCAAGGCGCGAGGGCGTGGTCTGTTGTGGTGCTCTCCCTGTCGTGGAAAG
TGGAGGTTCTTGCCAAGAGAGGTGTCTCTGAAGTTCGTGATGGTGAGCGA
GTTTCCGTTCTGGCAGTGGGAGACCTGCAGCACTGTTTAGCAGGAGAACG
ATAAGGAGGACGAGGAGATGCACATACGGTGTTCGGAGCTTCGGAGTGAA
CGGCGACAGACAAACAGACAGACAGATGGACTGGCTGACAGTTTGTTTTC
ACCGTTCTGTGAAGTCTCTAGAGACCGTGCCGGTCTCGTAGAGGAAAAAT
GGAAGAACTCGAACGTTTATGGAGGGGGGCAAGAACAGTGGTCCTTGGAG
TCGCAGTTCGCTGGTTTGGTGGTGCTTTCAGTGCGCATAACAGCGTGTAC
GGCCAGTGCTAGGCGATATGTCGTTGGTTTTCGGGAAAATTAAGTATCTT
CAGCCCTAGACAACAACCGAAAACGCTAAGTAGCCAAGTCCAAACGCCCA
TGCGCAGATCTGTCTATGTGTCTTCGCTAGACGCTACTCGCACTGGCAAG
CGTCCTCGTGGCATAGAGCAGAACATTTGAGCTCGTTGTGGAGCCAAATC
GAGCACCAACAATAACTCGACCAGTAAGTGTTGTCTCATCACGTGAACCC
GCCACAACCCGCCACCTCCCGTGCAGAGCAAAGCCCGGCCGCCCATGGAG
CCTCTAGAGTATCTTTACACCCGGAATTGCAGCAGTGACGACGAGGACGA
CTTTATCAACAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11018:1288..2250+

>mRNA_Ecto-sp13_S_contig11018.900.1 ID=mRNA_Ecto-sp13_S_contig11018.900.1|Name=mRNA_Ecto-sp13_S_contig11018.900.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11018:1288..2250+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGTTTCCAGTTGTGGGAGGGGAGGGGGATAGGGGGTCCCTCGTGATCGA
CTTTGAGGTGGACTTTCCGTCGAGGTTGCGGGAGGCTCACCTTGCGGCCC
TTCGGGTCGTGCTAACGGAGGAGGAGATCGCCCTCCTGGAGGACGTTCTG
AAGCTCATGTCGACGAGGAAGAGCAAAGCCCGGCCGCCCATGGAGCCTCT
AGAGTATCTTTACACCCGGAATTGCAGCAGTGACGACGAGGACGACTTTA
TCAACAAC
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