mRNA_Ecto-sp13_S_contig11006.892.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig11006.892.1
Unique NamemRNA_Ecto-sp13_S_contig11006.892.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5KBL4_9PHAE (CCHC-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBL4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.530e-57
Identity = 106/131 (80.92%), Postives = 111/131 (84.73%), Query Frame = 3 
Query:    9 RHGLPRPARQLPHWKTMTFREMIDKVFADTSKKMEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            RH +    R +   +TMTFRE IDKVFADTSKKME GSTGKKALAFLT ALGRVVSSS PEKLVYDLQTFA PTGT  SEYLT LQGLV NVRNLG+VTPQ+NTIQLAVRESVSDQ SVLTASVFKGKE G
Sbjct:  226 RHLITSITRSMSPAQTMTFREKIDKVFADTSKKMEEGSTGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAAPTGTPYSEYLTILQGLVQNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASVFKGKEKG 356
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5K8R6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R6_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.810e-57
Identity = 102/131 (77.86%), Postives = 110/131 (83.97%), Query Frame = 3 
Query:    9 RHGLPRPARQLPHWKTMTFREMIDKVFADTSKKMEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            RH +    R +    TMTFRE IDK+F+DTSKKME  STG+KALAFLT ALGRVVSSSLPEKLVYDLQT AVPTGT   EYLTTLQGLVH+VRNLGIVTPQ+NTIQLAV ESVSDQ SVLTA VF+GKELG
Sbjct:  137 RHLITSITRSMSPAPTMTFREKIDKIFSDTSKKMEERSTGRKALAFLTSALGRVVSSSLPEKLVYDLQTLAVPTGTPYGEYLTTLQGLVHSVRNLGIVTPQDNTIQLAVGESVSDQDSVLTACVFRGKELG 267
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5KRF6_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRF6_9PHAE)

HSP 1 Score: 188 bits (478), Expect = 1.440e-56
Identity = 100/115 (86.96%), Postives = 105/115 (91.30%), Query Frame = 3 
Query:   54 TMTFREMIDKVFADTSKKMEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKEL 398
            T+TFRE IDKVFADTSKKM+ GSTGKKAL FLT AL RVVSSS PEKLVYDLQT AVPTGT  SEYLTTLQGLVHNVRNLG+VTPQ+NTIQLAVRESVSDQ SVLTAS+FKGKEL
Sbjct:   37 TITFREKIDKVFADTSKKMDEGSTGKKALTFLTSALWRVVSSSSPEKLVYDLQTCAVPTGTPYSEYLTTLQGLVHNVRNLGVVTPQDNTIQLAVRESVSDQYSVLTASMFKGKEL 151
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5K0Q4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0Q4_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 9.430e-54
Identity = 95/116 (81.90%), Postives = 103/116 (88.79%), Query Frame = 3 
Query:   54 TMTFREMIDKVFADTSKKMEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            T+TFRE I KVF+DTSKK+E GSTG+KALAFLT ALGRVV+SS PEK+VYDLQTFAVPTGT   EYLTTLQGL HNVRNL +VTPQ+NTIQLAVRE VSDQ SVLTASV KGKELG
Sbjct:    6 TITFREKIGKVFSDTSKKIEEGSTGRKALAFLTSALGRVVNSSSPEKVVYDLQTFAVPTGTPYREYLTTLQGLGHNVRNLALVTPQDNTIQLAVREIVSDQYSVLTASVCKGKELG 121
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: D7G674_ECTSI (CCHC-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G674_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 3.450e-46
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 3 
Query:  108 MEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            M  GSTG++AL FLT ALGRVVSSS PEKLVYDLQTF VPTGT  SEYLTTL GLVHNVRNLGIVTPQ+NTIQLAVRESVSDQ SVLTASVFKGK+LG
Sbjct:    1 MARGSTGREALTFLTSALGRVVSSSSPEKLVYDLQTFTVPTGTPYSEYLTTLHGLVHNVRNLGIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKQLG 98
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5K255_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K255_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 2.860e-44
Identity = 87/96 (90.62%), Postives = 89/96 (92.71%), Query Frame = 3 
Query:  114 GGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            G +TGKKALAFLT ALGRVVSSS PEKLVYDLQTFAVPTGT  SEYLTTLQGLVHNVRNL IVTPQ+NTIQLAVRESVSDQ SVLTASVFKGKELG
Sbjct:  455 GEATGKKALAFLTSALGRVVSSSSPEKLVYDLQTFAVPTGTPYSEYLTTLQGLVHNVRNLAIVTPQDNTIQLAVRESVSDQYSVLTASVFKGKELG 550
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5JYQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYQ6_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 2.480e-42
Identity = 77/98 (78.57%), Postives = 83/98 (84.69%), Query Frame = 3 
Query:  108 MEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ*SVLTASVFKGKELG 401
            ME GSTGKKALAFLT ALG+VVSSS PEKLVYDLQ FAVPTGT +SEYLTTLQGLVHNVRNLGIVTPQ+NTIQLAVRESVSDQ         +G+ +G
Sbjct:    1 MEEGSTGKKALAFLTSALGKVVSSSSPEKLVYDLQRFAVPTGTPNSEYLTTLQGLVHNVRNLGIVTPQDNTIQLAVRESVSDQHKCFDRFRVQGQGVG 98
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BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Match: A0A6H5K9S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S7_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.550e-15
Identity = 38/43 (88.37%), Postives = 39/43 (90.70%), Query Frame = 3 
Query:  108 MEGGSTGKKALAFLTLALGRVVSSSLPEKLVYDLQTFAVPTGT 236
            ME GSTG+KAL FLT ALGRVVSSS PEKLVYDLQTFAVPTGT
Sbjct:    1 MEEGSTGRKALTFLTSALGRVVSSSSPEKLVYDLQTFAVPTGT 43
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig11006.892.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KBL4_9PHAE2.530e-5780.92CCHC-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5K8R6_9PHAE3.810e-5777.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRF6_9PHAE1.440e-5686.96CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0Q4_9PHAE9.430e-5481.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G674_ECTSI3.450e-4685.71CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K255_9PHAE2.860e-4490.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYQ6_9PHAE2.480e-4278.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9S7_9PHAE1.550e-1588.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig11006contigEcto-sp13_S_contig11006:4577..5599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size402
Hectar predicted targeting categoryother localisation
Exons2
Cds size303
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.3578978-UTR-Ecto-sp13_S_contig11006:4576..46291681462570.3578978-UTR-Ecto-sp13_S_contig11006:4576..4629Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11006 4577..4629 +
1681462570.366691-UTR-Ecto-sp13_S_contig11006:5250..52531681462570.366691-UTR-Ecto-sp13_S_contig11006:5250..5253Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11006 5251..5253 +
1681462570.383006-UTR-Ecto-sp13_S_contig11006:5556..55991681462570.383006-UTR-Ecto-sp13_S_contig11006:5556..5599Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig11006 5557..5599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462570.3749025-CDS-Ecto-sp13_S_contig11006:5253..55561681462570.3749025-CDS-Ecto-sp13_S_contig11006:5253..5556Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig11006 5254..5556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig11006.892.1prot_Ecto-sp13_S_contig11006.892.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig11006 5254..5556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig11006.892.1

>prot_Ecto-sp13_S_contig11006.892.1 ID=prot_Ecto-sp13_S_contig11006.892.1|Name=mRNA_Ecto-sp13_S_contig11006.892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MTFREMIDKVFADTSKKMEGGSTGKKALAFLTLALGRVVSSSLPEKLVYD
LQTFAVPTGTSDSEYLTTLQGLVHNVRNLGIVTPQNNTIQLAVRESVSDQ
*
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mRNA from alignment at Ecto-sp13_S_contig11006:4577..5599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig11006.892.1 ID=mRNA_Ecto-sp13_S_contig11006.892.1|Name=mRNA_Ecto-sp13_S_contig11006.892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11006:4577..5599+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTCAAGGCGGCACGGTCTACCGCGACCAGCAAGGCAACTTCCACACTGG
AAGGTGGGTGGGAGATGACCGGGGGGGTAACGTGTCTGTCAAGGAGGAAG
GGAAGGAGGAGGAGGAGGTGTTGAGGGAAGAAAATACTACACCGGTTAAT
GGCAAGCTCAAAACCGAGTTCCAGGAGGAGTTGTCGAACAAAGAGAAGGG
AATCGAAACTCTGAAGCAGAAGTTGGCTGAAAAGGGAGGCCAGTTCGAAC
AGCTGAGCATCCAGGACACGAACAAAAAACCTCAAGCATGTGCAACGGCG
GTCGCATCTGAACCTAGAGTGGCTGCAAGGGGGGCGGCGCCTGTCAAGGA
AGAGCAGCAAGATGTTATGTCTCACTCAGCGCCGGTAGCGACGGTTAAGA
GAACCGGAGAGTATCACGATCCAGCCGTTGACCTCGAGGGAGAAACAAAA
GATCATGACGGGTTACGTGACGATAAACATGAAGGATTGGACTAAGCTCC
CTTGGGTACCACTCTCTGATTCGCCGGGAGAGTTGGTTTCTTTCAACAAA
AGGTTGGAAGATACGGTCAACGATGTGTATTTGGCAGTGGGGGATTACAA
AGGGTGGTGGATGGGAAAAACCTGTGCACAGACATCTGATCACTTCCATC
ACTCGATCCATGTCCCCTGCCCAGACGATGACGTTCCGCGAGATGATAGA
CAAGGTCTTTGCGGATACGTCGAAGAAGATGGAAGGAGGGTCGACGGGTA
AGAAAGCGTTGGCATTCTTGACTTTGGCGTTGGGGAGGGTGGTGAGTTCA
TCGTTACCCGAGAAGTTGGTGTACGACTTGCAGACCTTTGCGGTACCGAC
TGGAACGTCGGATAGTGAGTACCTGACTACCTTGCAGGGGTTGGTGCACA
ATGTTCGGAACTTGGGAATTGTGACGCCGCAGAATAACACAATTCAACTG
GCAGTCAGGGAGAGTGTGTCCGATCAATAGAGTGTTCTGACCGCTTCCGT
GTTCAAGGGCAAGGAGTTGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig11006:4577..5599+

>mRNA_Ecto-sp13_S_contig11006.892.1 ID=mRNA_Ecto-sp13_S_contig11006.892.1|Name=mRNA_Ecto-sp13_S_contig11006.892.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig11006:4577..5599+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGTTCCGCGAGATGATAGACAAGGTCTTTGCGGATACGTCGAAGAA
GATGGAAGGAGGGTCGACGGGTAAGAAAGCGTTGGCATTCTTGACTTTGG
CGTTGGGGAGGGTGGTGAGTTCATCGTTACCCGAGAAGTTGGTGTACGAC
TTGCAGACCTTTGCGGTACCGACTGGAACGTCGGATAGTGAGTACCTGAC
TACCTTGCAGGGGTTGGTGCACAATGTTCGGAACTTGGGAATTGTGACGC
CGCAGAATAACACAATTCAACTGGCAGTCAGGGAGAGTGTGTCCGATCAA
TAG
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