mRNA_Ecto-sp13_S_contig10916.817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: D8LTZ2_ECTSI (DNA polymerase alpha subunit B n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTZ2_ECTSI) HSP 1 Score: 968 bits (2503), Expect = 0.000e+0 Identity = 526/581 (90.53%), Postives = 530/581 (91.22%), Query Frame = 1
Query: 1 SRLGMSSWAGFETEVAKSKAAASTP-TASAGTXXXXXXXXXXXXXXXXXXXXXXXXAGRRVVNTVTSEDLASSGTKRPMLPFSSPDPKARSKLARQDGVGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGLTEITPVGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 1740
SRLGMSSWAGFETEVAKSKAAASTP AS GT XXXXXX XXXXXXXXX AGRRVVNTVTSEDLASSGTKRPMLPFSSP+PKARSKLARQDG GGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKT SYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMER+FGLTEITPVGVPRQEQVV VGRVCCESTEGKINRASILLE ALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLR QHGA+LGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVD+EHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLD LFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTG RTTS RQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ
Sbjct: 57 SRLGMSSWAGFETEVAKSKAAASTPPAASTGTASXXXXXXRXXXXXXXXXIVTPRPAGRRVVNTVTSEDLASSGTKRPMLPFSSPNPKARSKLARQDGEGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTASYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERKFGLTEITPVGVPRQEQVVAVGRVCCESTEGKINRASILLEGSRRDSSGQRAHLDLRELQSFALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRAQHGAELGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDSEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDKLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGARTTSGGASAAAAA---RQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 634
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: W7TPC9_9STRA (DNA polymerase alpha subunit B n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPC9_9STRA) HSP 1 Score: 364 bits (934), Expect = 2.880e-114 Identity = 218/462 (47.19%), Postives = 275/462 (59.52%), Query Frame = 1
Query: 361 YSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGL---TEITPVGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
Y +R NAGQK + AL + P+RYR+MYT LEERA A EK L+ LQ + R GL E+TPVGVP+QE V +GRVCCE+ EG+IN+AS+LLE +LFPGQVVAV+GVN SG +MV R II+G+PRP +S +L QH + GG ALS+ AAGP+TT+DSL YEPL DLL + A +PDV VL GPFVDA HP+VASG+ I ESVDFE+LF++R+S L+ L+ + L ++ VLVPSL DVFH+ PP DR+ GGV + EER+ L +P + + KR++ NP++ VNEV +GV++ D L LSGDEVS NRLARLA HLLQQQSF+PLFPPPA AQLD+RHA MP TPDVLL+PS+L F + V
Sbjct: 206 YLNRTNAGQKAGTLPGALD------------------------INLPSRYRFMYTTLEERARAQEKMLLRLQDDLVAR-GLEAEAEVTPVGVPKQETVTVIGRVCCEAPEGRINKASVLLEGSRRDSGGFRVKLELGQLPAFSLFPGQVVAVEGVNSSGFKMVVRRIIEGIPRPFLTSPAKKMLEFQHDSLYQGGGALSLLVAAGPYTTTDSLEYEPLEDLLKVIAARQPDVAVLCGPFVDANHPQVASGETEIAGAGEEKESVDFESLFKMRVSLFLEGLYDTNPTLASRIVLVPSLNDVFHD----HPPLADRIPGGVPSPW--FEEERLGDLGLPFASEKDGA-------------DKRLYCLSNPSFFTVNEVAVGVTTNDILCHLSGDEVSY--NPGNRLARLAAHLLQQQSFFPLFPPPADGQAQLDLRHADHLRMPITPDVLLLPSKLTPFVKDV 621
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A836CA88_9STRA (DNA polymerase alpha subunit B n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA88_9STRA) HSP 1 Score: 359 bits (921), Expect = 4.510e-112 Identity = 233/546 (42.67%), Postives = 284/546 (52.01%), Query Frame = 1
Query: 214 SGTKRPMLPFSSPDPKARSKLARQDGVGGDGASLSPTSVQSPPDLVR--------------------AVYSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGT-----RCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGLTEITPVGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGG---------SESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMP---ATPDVLLVPSRLAQFARQVQ 1740
S KRP+ SP +K AR G GG + SVQ P R A Y+ R NAG + YNP+ + ++A RC V VGA ARYRYM+ PLEER+ E L+A ++ R L E+TPVGVPRQE+V VGRV CES EG++ RAS LLE ALFPGQ+VA +G+N G RM RG++ G P P P+ AAGP+TT D+L YEPLNDLL V+ RPDVVVLMGPFVDAEHP +A+G A + V GG +E VDFETLFRLR+ +KL+ + AD PTQFVL+PS RD FH+ YPQPPF D V GG LG+G Y ++ ++ L +P R RV PNPA V +S D+LFDLS +E + G G RLARLA HLLQQ+SFYPL P AG LD R A + A PDVLL+P RLAQFAR V+
Sbjct: 127 SHLKRPLPGLMSPPGSTVNKAART-GAGGFSSPAPSLSVQQTPVAARSGGGXXXXXXXXXXAAHMPQAAYADRANAGARVLEYNPSKLMHAGAIAAXXXXXXXXXXRQRCSVEPICGVGAAARYRYMFAPLEERSRLQEAALLAATAELARAHALGELTPVGVPRQEEVTVVGRVVCESGEGRMGRASALLEGSWRDSGGARAALALDALPSFALFPGQIVAARGINSGGMRMAVRGLLPGSPAP-----PAXXXXXXXXXXXXXXXXXXXXVAAGPYTTDDNLEYEPLNDLLAHVQETRPDVVVLMGPFVDAEHPLIAAGAAALP-VPGGXXXXXXXDAAEPVDFETLFRLRVCDKLERVLADPAH-PTQFVLIPSTRDAFHDATYPQPPFADAVAGGAPLGIGEYADDAVYTLGLP--------------------RDARVACLPNPAAFAVGGAVFAATSADSLFDLSCEEAAGGAGGAPRLARLADHLLQQRSFYPLRPARAG--VPLDPRRAAALALAPRGAAPDVLLLPGRLAQFARDVR 642
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A7S2ERG3_9STRA (DNA polymerase alpha subunit B n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ERG3_9STRA) HSP 1 Score: 296 bits (757), Expect = 3.880e-88 Identity = 193/537 (35.94%), Postives = 273/537 (50.84%), Query Frame = 1
Query: 238 PFSSPDPKARSKLARQDGVGGDGASLSPTSVQ------SPPDLVRAV----YSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRF--------------GLTEITPVGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXX--------ALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRV-EGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSA----AQLDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
P +P PK R +++ V S+SP + +P +++ Y RKNAG SYNP L LS + +P + + R+M+T ++RA AL K LV +++ + L + VGVPRQE+V +GR+C E+ EGK+NR S+LLE +LFPGQ+VAV+G+N SG ++VA + +G P ++ G + I AGP+TT D+L Y PL+DLL +R +PDVV+L GPFVD +HP V SG+ I+ +G + E LF R+S L+ LF D+ L TQFVLVP L D EFVYPQPP DR+ +GG +L + + +D G+ KR+H PNP LR+NEVTIG++STD LF ++ DE + +RLARL HL+QQQS+YPL+PPP +A LD++ +W M PD+L+VPS+L FAR+V
Sbjct: 108 PSQTPPPKQRRVEIKEEEVT-PRVSVSPLKSKLSPVPPTPSSILKGANTPKYEERKNAGATVASYNPH-SLTPLSSSSAPHIFYKHVE-----------KCRFMFTTPQDRANALNKRLVEFGKRIQEVYDIKDMYDVEEDQEVALARLENVGVPRQEKVCCIGRICNEAHEGKLNRTSLLLEGSRHQSNGMRVNLDISPLLDANLETRSSFSLFPGQIVAVEGINASGRKLVAHKLCEGAAPPKAVLTAGEMKEFYKSEKEG----MKIMTCAGPYTTMDNLEYNPLSDLLQQIREEQPDVVILTGPFVDIKHPLVQSGNVEIDVGEGNMSKIPHEALFAQRISALLEQLFEDEEGLGTQFVLVPHLDDAVAEFVYPQPPLSDRLPKGGKQLNLSSAE-----AIDFGSLGLHHIESANRQPGQSTTP--KRIHCVPNPCTLRINEVTIGITSTDVLFHMNCDEANGNLPPGSRLARLTQHLIQQQSYYPLYPPPVSNARNSSVNLDLKQMEKWSMECQPDILIVPSKLTTFARKV 620
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A7S2F9H8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2F9H8_9STRA) HSP 1 Score: 281 bits (719), Expect = 2.220e-86 Identity = 155/313 (49.52%), Postives = 203/313 (64.86%), Query Frame = 1
Query: 808 QGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQ---LDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
+G+N SG RMV + + +GVPRPLP S P +L+++ HG G + LSI AAGPF T+D+L YEPL+DLL + A DV+VL GPFVD HPK++ GD IE DG ESVD++T F ++S L+TL+ ++ D Q VLVPSL D H++V+PQPPF DRVEGG + +PEE++F LD+P TG KRVH NPA ++VNEV +GV+STD L L E++ +NRL RLA HLL+QQSF+PLFP G A + +DM + R MP +PDVLLVPSRLA FAR++
Sbjct: 1 EGINSSGTRMVVKNLCEGVPRPLPRSAPDELMKLHHGV---GSQPLSIAVAAGPFCTNDNLDYEPLSDLLHS--AKHNDVLVLCGPFVDVNHPKLSGGDVDIETEDG-VESVDYDTFFNFKISGVLETLYEENPDTKLQVVLVPSLHDAHHDYVFPQPPFADRVEGGQQSPF--FPEEKLFTLDIPHTG-------------GLGEDSKRVHCVSNPAMIKVNEVVVGVTSTDVLMQLGKAEIAQRPMSSNRLGRLAEHLLKQQSFHPLFPANGGVAGEPVPVDMTKSDRLRMPMSPDVLLVPSRLATFARKL 292
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: B8BYS5_THAPS (DNA polymerase alpha subunit B n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYS5_THAPS) HSP 1 Score: 291 bits (746), Expect = 3.950e-86 Identity = 187/530 (35.28%), Postives = 269/530 (50.75%), Query Frame = 1
Query: 250 PDPKARSKLARQDGVGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGL--------------TEI--------TPVGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXX-------ALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEE-----RMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
P K+ K + G G S +P S L AV + +NA TT + S P P T +R+M+TPL RA ALE ++ + + ++ + E+ TPVG+P+Q +VV VGR+C E+ EG++NRASI LE + FPGQ+VAV+G+N SG M A + +GVP P+ S +L++ +G D G LSI + GPFTT D+L Y+PL D++ + +PDVV++ GPFVD P V G+ TI DG + V +E LF+ + + L+ ++A+D D+ TQFVLVPS D+ E VYPQPP V V GV + +E +V + ++T+ R KRVH NP L++NE+++GV+S+D LF +S DE +A RL R+A HL+QQ+S+YPLFP A A LD+ + W MP PD+L+VPS+L FAR+V
Sbjct: 170 PTAKSAPKYQDRTGTGSLVTSYNPNS------LPTAVEVNAQNADNATTQKTCTIQYHPSSTHPQPPTKSTP--------------FRHMFTPLATRAKALESRILTMSDSICEKYNIKSEEEEMLKYEHVSAEVVDDNMACWTPVGIPKQGKVVCVGRICNEAHEGRLNRASIRLEGSRKDSSGSRIHLDLNSLVTNNDNNQSYSFFPGQIVAVEGINSSGRTMQASRLYEGVPPPVEKSTAKELIKYNYGPDGQNGMPLSIVSMCGPFTTKDNLEYDPLVDMVMKISEDQPDVVIMCGPFVDGRQPLVQGGEPTITDEDGNEKKVSYENLFQTKFAALLEEMYANDPDMKTQFVLVPSTEDMICESVYPQPPL---VNQEVTSGVKKFNDEFGNLGLNYVEIAGRENIKTSE------------RTKRVHCVSNPCTLKINELSVGVTSSDVLFHISSDETNANLPPGGRLTRIAQHLIQQRSYYPLFP--AAKGACLDLSRSDEWEMPVQPDILIVPSKLTTFARKV 662
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A1Z5K576_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K576_FISSO) HSP 1 Score: 280 bits (716), Expect = 2.770e-82 Identity = 165/418 (39.47%), Postives = 236/418 (56.46%), Query Frame = 1
Query: 508 YRYMYTPLEERAAALEKGLVALQGQMERRFGL---TEITP---VGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXX-ALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGV-GAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
YR ++T E+RA AL++ L+ + + ++ L E+ P VG+PR +QV +GR+C + GKIN S+LLE ++FPGQ+VA++G+N +G ++ + + +G +SR DL + A G+ + + AAGPFTTSD+ Y+P DLL V+ +PDVV+L GPFVD HP V SG ++ DG V +ET F ++S L+ L ++ L TQFVLVPSL D E+VYPQPPF DRV GG++ + GA G+ + KRVH PNP L++NEV IG++STD LF +S DE +A +RLAR++ HLLQQ+S+YPLFPP G +D ++ W MP PD+LL+PS+LA F+R V
Sbjct: 206 YRSLFTTTEQRATALDQQLIHMGQHLMEKYQLGQSDEVAPLEGVGIPRADQVCNIGRICNAAHYGKINATSVLLEGSRAAVGGARVAVDLSTLSSQYSVFPGQIVALEGMNPTGRKLQVQRLCEGAAAAPVTSRVRDLRQYHLQAQQ--GQPVKLLTAAGPFTTSDNFQYQPWQDLLHVVQNEQPDVVILTGPFVDMNHPAVQSGQTALQDEDGNDVIVPYETFFMHKISLLLEELLTENPLLMTQFVLVPSLEDATAEWVYPQPPFQDRVSGGLQPNIPGA-------------DGITIGTMGLDYVETATELPAKRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEYWSMPCQPDLLLLPSKLACFSRIV 606
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A1Z5KI39_FISSO (DNA polymerase alpha subunit B n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KI39_FISSO) HSP 1 Score: 279 bits (713), Expect = 4.290e-82 Identity = 189/511 (36.99%), Postives = 274/511 (53.62%), Query Frame = 1
Query: 235 LPFSSPDPKARSKLARQDGVGGDGASLSPTSVQSPPDLVRAV--YSSRKNAGQKTTSYNPALGLRGLSVAPSPRQAGTRCDVVVDG-AVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGL---TEITP---VGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGV-GAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQLDMRHAHRWGMPATPDVLLVPSRLAQFARQV 1737
LP +P P R +LA +SLSP PP ++ Y +R AGQ ++++ A R + P R +C + D + YR M+T E+RA AL + L+ + + ++ L ++ P VG+PR +QV VGR+C + GKIN S LLE ++FPGQ+VA++G+N +G ++ + + +G ++R S L Q+ G+ L + AAGPFTTSD+ Y+PL DLL V+ +PDVV+L GPFVD +HP V SG ++ +G V +ET F ++S L+ L + L TQFVLVPSL D E+VYPQPPF DRV GG++ + GA G+ + +RVH PNP L++NEV IG++STD LF +S DE +A +RLAR++ HLLQQ+S+YPLFPP G +D ++ +W MP PDVL++PS+LA F+R V
Sbjct: 98 LPHVTP-PAKRLQLAVATEPRRSSSSLSP----GPPVSLQPSDKYETRTGAGQIVSTFS-AKEKRTATYVPLSRP---KCAIRKDSFSTNLSHTYRSMFTTTEQRATALNQQLLEMTKHLIDKYQLGQSDQVAPLEGVGIPRADQVCNVGRICNAAHAGKINATSCLLEGSRAEGGVRVSLDWSGVSQY-SVFPGQIVALEGMNPTGRKLQVQRLCEGAAAAPVTTRRSALR--QYHLQAQEGQPLKLVTAAGPFTTSDNFHYQPLQDLLHVVQQEQPDVVILTGPFVDLDHPAVQSGQTILQDEEGNDVIVPYETFFVHKISLLLEELLTEHPMLMTQFVLVPSLEDATAEWVYPQPPFQDRVPGGLQPNIPGA-------------DGITIGTMGLDYVETATELPCQRVHCVPNPCTLQINEVVIGITSTDVLFHMSADETNANLPPGSRLARISQHLLQQRSYYPLFPPAPGM--NMDYQYMEQWSMPCQPDVLILPSKLACFSRTV 581
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A7S4EDL8_9STRA (DNA polymerase alpha subunit B n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDL8_9STRA) HSP 1 Score: 273 bits (698), Expect = 1.320e-80 Identity = 196/554 (35.38%), Postives = 273/554 (49.28%), Query Frame = 1
Query: 187 TVTSEDLASSGTKRPML-PFSSPDPKARSKLARQDGVGGDGASLSPTSVQSPPDLVRAVYSSRKNAGQKTTSYNPALGLRG-------------LSVAPSPRQAGTRCDVVVDG-------AVGAPARYRYMYTPLEERAAALEKGLVALQGQMERRFGLTEITP--VGVPRQEQVVTVGRVCCESTEGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQG-VNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATIECVDGGSESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQ--KRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTN------RLARLAGHLLQQQSFYPLFPPPAGSA----AQLDMRHAHRWGMPATPDVLLVPSRLAQFARQVQ 1740
T S+ S KRP+ P +P P+ + A G+ + + TS + PP Y R N G N L R + AP+ + G AVG RYR+M+TP ER AAL+ LV ++ F ++ P +G Q + GRVC ++ +G++N++S+ LE ALFPGQVV V G G G ++AR II G P P P+S P+ ++ H + LSI+AA+GP+TTSD L Y PL DLL A RAA+PD VVL+GPFVDA+HP + D + G ESVD TLF L+++ L+ L ++ D PTQF+L P+ RD+ E V+PQPP LD P G + + + +VH+ NP ++NEV +GV++TD LF LS E+ G+ + R+ARLA HLL Q+SFYPLFPPP+ S+ A +D+R +W +P PDVL+ PS+L FAR VQ
Sbjct: 6 TPVSDAPPPSTLKRPLENPTVTPAPRKKVSFA------GETPTATETSPKPPPSTATK-YKDRTNGGATVDVANKHLQRRAAWGDLGSVSQRAVVVAAPTEKDVDAWTSSKAYGGTESTQLAVGTATRYRHMFTPPGERCAALDASLVEAAQKIRENFSEKDVEPCAIGTATQTPALFCGRVCLDALDGRLNKSSVCLEGERSEGGFRVPLDLTAVEGSYALFPGQVVGVVGSAPGEDGTILARSIILGSPAP-PASTPAKQMQEFHTKQQN-NQPLSIWAASGPYTTSDDLDYSPLKDLLAACRAAKPDAVVLLGPFVDADHPLAKNND-----LKEGDESVDAATLFVLKVAWALEKLVIEE-DCPTQFILAPATRDLVAEPVFPQPP-----------------------LDAPPLGAQNDARPSWQDEMPVGSLELPSQVHVVGNPGLFKINEVVVGVTATDVLFQLSSQELFHNGRDNSEIAKMPRVARLASHLLSQRSFYPLFPPPSMSSTVADAPVDLRQHGKWKLPLQPDVLITPSKLQPFARDVQ 521
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Match: A0A7S2FH66_9STRA (DNA polymerase alpha subunit B n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FH66_9STRA) HSP 1 Score: 271 bits (694), Expect = 1.190e-79 Identity = 186/517 (35.98%), Postives = 268/517 (51.84%), Query Frame = 1
Query: 313 LSPTSVQSPPDLVRAV---------YSSRKNAGQKTTSY---------NPALGLRGLSVAPSPRQAGTRCDVVVDGAVGAPA--------------RYRYMYTPLEERAAALEKGLVALQGQMERRFGL---TEITPVGVPRQEQVVTVGRVCCEST-EGKINRASILLEXXXXXXXXXXXXXXXXXXXXXALFPGQVVAVQGVNGSGGRMVARGIIDGVPRPLPSSRPSDLLRVQHGADLGGGKALSIFAAAGPFTTSDSLVYEPLNDLLGAVRAARPDVVVLMGPFVDAEHPKVASGDATI--ECVDGGS---ESVDFETLFRLRLSEKLDTLFADDRDLPTQFVLVPSLRDVFHEFVYPQPPFHDRVEGGVELGVGAYPEERMFVLDVPKTGVRTTSXXXXXXXXXXXXRQKRVHLAPNPAWLRVNEVTIGVSSTDALFDLSGDEVSAGGKGTNRLARLAGHLLQQQSFYPLFPPPAGSAAQ----LDMRHAHRWGMPATPDVLLVPSRLAQFA 1728
SP+S+Q+P + V Y++RKNAG T +P + G+S P C + V G G+PA YR+MYT + +RAA+L++ ++ ++ G + +PVGV Q+ VV GRVCC++ EGKIN+ SILLE ALFPGQ V V+G+N SG RMV + ++ GVPRPLP ++ + L + A+GPF +++L Y PL DLL + A DV++L GPFVD HP++ SG + + DG + ES+D+ LF L++++ L+ + Q V+VPSL D FH+ VYPQPP D+ GV+ +PEE+ F +++P + KR+HL NPA LR+NEV +G+SSTD L + E++ K RL RLA HL+ QQSF+PLFP G A LD+ + RW MP +PD+L++PS+LA FA
Sbjct: 64 FSPSSLQTPGQKIDIVSHPVTPSKSYATRKNAGDITLEMRAKIEVPTDSPGKEINGMSRQP--------CHINVFGEPGSPAPESDSSHESVGVASHYRHMYTTVMDRAASLQRSFDHMEQELLAHAGKEHSSRRSPVGVRSQDPVVCFGRVCCDTLGEGKINKTSILLEGGRMEGGQRIELKLQDLSSF-ALFPGQWVLVEGINSSGPRMVVKRLMTGVPRPLPQAQITKKRT----------SPLRLVVASGPFCCTNNLDYAPLKDLL--LNANSADVLILSGPFVDVAHPQLKSGVVLMAGDTDDGATCEMESLDYCNLFNLKVTQALEDMQDAHPSSTLQIVMVPSLADAFHDCVYPQPPLTDQSRKGVKSPW--FPEEKYFDVEIPFAAQTEVTG-------------KRMHLVSNPAMLRINEVVVGISSTDILMSMGRAEIAENPKNKQRLPRLAEHLVNQQSFFPLFPANGGVKANEDVPLDLSQSERWRMPVSPDILILPSKLATFA 544 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10916.817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10916.817.1 >prot_Ecto-sp13_S_contig10916.817.1 ID=prot_Ecto-sp13_S_contig10916.817.1|Name=mRNA_Ecto-sp13_S_contig10916.817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=576bp MSSWAGFETEVAKSKAAASTPTASAGTASTPSAASRSSSRPPSASIVTPRback to top mRNA from alignment at Ecto-sp13_S_contig10916:1..5094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10916.817.1 ID=mRNA_Ecto-sp13_S_contig10916.817.1|Name=mRNA_Ecto-sp13_S_contig10916.817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5094bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10916:1..5094+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10916:1..5094+ >mRNA_Ecto-sp13_S_contig10916.817.1 ID=mRNA_Ecto-sp13_S_contig10916.817.1|Name=mRNA_Ecto-sp13_S_contig10916.817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10916:1..5094+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |