mRNA_Ecto-sp13_S_contig10821.739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10821.739.1
Unique NamemRNA_Ecto-sp13_S_contig10821.739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10821.739.1 vs. uniprot
Match: A0A6H5J9V8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V8_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 5.650e-12
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = 1 
Query:    4 HCLPLLHLAAGRYDLAEKFLRQELSEVEDVPRVFADHGDVRQRQVLLGRFTAE--LAVVLEKKGKFDEAELLLERSVAFGMEELGPEH 261
            + LP + L AG+YDLAEK  RQEL++ E   R F DH     R+ + G  TA   LA VLEK+GKF+EAE +   S++   +  GP+H
Sbjct:  276 YVLPDVQLDAGQYDLAEKSHRQELADAEHEAREFEDHDSEESRRAMHGENTARSRLAHVLEKQGKFEEAETIYRHSMSILKKTHGPDH 363
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BLAST of mRNA_Ecto-sp13_S_contig10821.739.1 vs. uniprot
Match: D7G1L3_ECTSI (Kinesin light chain-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L3_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.960e-11
Identity = 40/89 (44.94%), Postives = 52/89 (58.43%), Query Frame = 1 
Query:    1 GHCLPLLHLAAGRYDLAEKFLRQELSEVEDVPRVFADHGDVRQRQVL--LGRFTAELAVVLEKKGKFDEAELLLERSVAFGMEELGPEH 261
            G+ LP L LAAG YDLAEK  RQ L++ E+  R   DH     R  L       + LA VL+K+GK++EAE L  RS+A   +  GP+H
Sbjct:  277 GYVLPDLQLAAGEYDLAEKSQRQALTDAENEVREVEDHDSKESRWALDRENEARSRLATVLDKQGKYEEAETLCVRSLAIDEKVYGPDH 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10821.739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J9V8_9PHAE5.650e-1245.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1L3_ECTSI1.960e-1144.94Kinesin light chain-like protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10821contigEcto-sp13_S_contig10821:1549..2898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score69.7
Seed ortholog evalue7.6e-10
Seed eggNOG ortholog2880.D7G1L3
Model size264
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Cds size261
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462557.2895477-CDS-Ecto-sp13_S_contig10821:1550..16251681462557.2895477-CDS-Ecto-sp13_S_contig10821:1550..1625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 1551..1625 -
1681462557.299941-CDS-Ecto-sp13_S_contig10821:2548..26651681462557.299941-CDS-Ecto-sp13_S_contig10821:2548..2665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 2549..2665 -
1681462557.3077528-CDS-Ecto-sp13_S_contig10821:2829..28981681462557.3077528-CDS-Ecto-sp13_S_contig10821:2829..2898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 2830..2898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10821.739.1prot_Ecto-sp13_S_contig10821.739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10821 1551..2898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10821.739.1

>prot_Ecto-sp13_S_contig10821.739.1 ID=prot_Ecto-sp13_S_contig10821.739.1|Name=mRNA_Ecto-sp13_S_contig10821.739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
GHCLPLLHLAAGRYDLAEKFLRQELSEVEDVPRVFADHGDVRQRQVLLGR
FTAELAVVLEKKGKFDEAELLLERSVAFGMEELGPEH
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mRNA from alignment at Ecto-sp13_S_contig10821:1549..2898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10821.739.1 ID=mRNA_Ecto-sp13_S_contig10821.739.1|Name=mRNA_Ecto-sp13_S_contig10821.739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1350bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10821:1549..2898- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCACTGTCTACCGTTGTTACATCTCGCTGCCGGACGGTACGATCTGGC
CGAGAAGTTCTTGAGACAGGTGACCCGCTTAGGTGCATCCAGTTAAGGCC
GCATCTTGTCATAGCCCCATGTTGTCTGTGAGCGGAGCCTAGTATTCCCG
TTCGCCTTTATCTACAACTGTTGTCAATGTGGGACCAGGATGTCACCCGT
GCGCACGATTTTTGTGCGCTGTTGTCGGACCAGGAACTCTCAGAGGTGGA
GGACGTGCCACGGGTTTTTGCTGACCACGGAGACGTGAGACAGAGACAAG
TACTACTCGGACGTTTCACGGCAGAACTCGCCGTTGTGCTGGAGAAAAAG
GTAAGGGTCGACAGCGAAACATAGGAAGGATTCGCCGGCAATGTCGCTTG
ACGAAGCACATAGCACATGCCTGCATATTTTCATATTTTTATTCTGGGCC
TGGCGTTAGCGGCATTCGTTTGTTTTCTTGGCTAATTCGTGTGTTGTGGA
TTTGACCACTCAGCCAGATGGTAATGGATTAATCAAGCGCCAGGCTGAAC
GTACAATTTAATACACTCCAGCACCGGACCGTCTCCAACGGCAGGCTTGC
CTTTGTACGCTTGTTCGAGAAGGGCTTTTCCATCCACAAACCAGTTCGTT
TTATTTTTCATCTCGGAGGAAAGAAATCGCACATGTCGAGGATTGTAACC
TCGACCTCTCCTCGACAACGCCAAATGTTTCGATTTTGACCTCTCTGCCG
TAAGGGTAAGTTTTTCCAAGTATCAGACTGAAGTTAATCTTACAACACTT
CGTTGAAGAATAGAGTTCGGAAGAGCGGCATTTGTTCCATGTCGCGGGGT
ATGCTGCCGTCGCTGGAATGCTGTCAATCATGAGTATTTGCTGTAGATAA
CAGTCGTAGAACCACCTGAGGACCATGACCGGAATAGTCTCCGGTATATT
GTATCAGTGATCGGATCATTGTACACACCTACGAGTTGTACGCCGAACCA
TGAGAGTATGGTACATCGAACCTTTAGGGTTTCTCGTAGTGTTGCTAAAG
GTCTAGTACCGTGATCCGAATGTGCGATTGGTTGTGTATGTGCATGTTGC
CGTAATAGGGCGGGAGACTCGCCCCCCCTGGTGCTCGCCCACGTTGCTCA
CTCCGTTCTCTCTCTTTCTTTGCCTTTCGGCTGACTATTCGCTATTTCAA
ATCGTTCTCTGGTTTGCAAAAAAGAGCACGCTGATTGACCTCGTTGTTTT
CGCCCATTTCCGTCACGTTCCAGGGCAAGTTTGATGAAGCCGAACTGCTG
CTCGAACGCTCGGTAGCTTTCGGTATGGAGGAGCTAGGCCCTGAGCATCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10821:1549..2898-

>mRNA_Ecto-sp13_S_contig10821.739.1 ID=mRNA_Ecto-sp13_S_contig10821.739.1|Name=mRNA_Ecto-sp13_S_contig10821.739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10821:1549..2898- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCACTGTCTACCGTTGTTACATCTCGCTGCCGGACGGTACGATCTGGC
CGAGAAGTTCTTGAGACAGGAACTCTCAGAGGTGGAGGACGTGCCACGGG
TTTTTGCTGACCACGGAGACGTGAGACAGAGACAAGTACTACTCGGACGT
TTCACGGCAGAACTCGCCGTTGTGCTGGAGAAAAAGGGCAAGTTTGATGA
AGCCGAACTGCTGCTCGAACGCTCGGTAGCTTTCGGTATGGAGGAGCTAG
GCCCTGAGCAT
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