mRNA_Ecto-sp13_S_contig10821.738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10821.738.1
Unique NamemRNA_Ecto-sp13_S_contig10821.738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5JUC1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUC1_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 3.220e-9
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQ 132
            +QGK +EAE LY+RC+AMK K LGPEHPSLA TLNN A LL+ Q
Sbjct:  185 IQGKYSEAEPLYDRCQAMKGKALGPEHPSLAATLNNRAELLRAQ 228
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.780e-8
Identity = 30/42 (71.43%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQ 126
            L+GK  EAE+LY +C+A++EKVLGPEHPSLATTL+NLA LL+
Sbjct: 1763 LKGKYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLLR 1804
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5JJK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJK0_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-7
Identity = 29/44 (65.91%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQ 132
            ++GK T+AE LYERC+A+ EK LGPEHP +ATTLNN A LL+ Q
Sbjct:  939 IKGKYTDAEPLYERCQAIYEKRLGPEHPYVATTLNNRAGLLEAQ 982
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 55.1 bits (131), Expect = 6.830e-7
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    4 QGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARL 120
            QGK  EAE LY+R   ++E VLGP+HPS+ATTLNNLA L
Sbjct:    4 QGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 7.120e-7
Identity = 26/44 (59.09%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQ 132
            +QGK  EAE LYER +A++EKVLG EHP +A++LNN   LL+ Q
Sbjct:   17 IQGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQ 60
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 8.600e-7
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQR 129
            +QGK  EAE LYER  A++EKVLGPEHP +AT+L+N A LL+R
Sbjct:  692 IQGKYAEAEPLYERSLAIQEKVLGPEHPDVATSLDNRASLLER 734
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5KMK1_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK1_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-6
Identity = 28/43 (65.12%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    4 QGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQ 132
            QGK TEAE LYER +A++EKVLG EHP +AT+LN+ A+LL +Q
Sbjct:   14 QGKYTEAEPLYERSQAIREKVLGSEHPRVATSLNDRAKLLCKQ 56
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: D8LL58_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL58_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.090e-6
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLL 123
            LQGK  EAE LY+RC+A+ E+ LGPEHPS+ATTL+  A L+
Sbjct:  653 LQGKFAEAEELYDRCQAINEEALGPEHPSVATTLHGRAGLM 693
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: D7FXH0_ECTSI (Tetratricopeptide repeat containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXH0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 2.110e-6
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    7 GKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQ 132
            G   EAE+LY RC+A++EKVLGPEHPSLATTL  L   L +Q
Sbjct:  959 GNYAEAEALYSRCQAIEEKVLGPEHPSLATTLEKLGVALYKQ 1000
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BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Match: A0A6H5LJA6_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJA6_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 6.070e-6
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLA 114
            +QGK TEAE LY R +A++EKVLGPEHP +AT+LNN A
Sbjct:  433 IQGKFTEAEPLYGRSQAIQEKVLGPEHPDVATSLNNRA 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10821.738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5JUC1_9PHAE3.220e-970.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHN5_9PHAE1.780e-871.43CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JJK0_9PHAE1.390e-765.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI0013D295286.830e-766.67tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
A0A6H5K3K8_9PHAE7.120e-759.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G722_ECTSI8.600e-765.12NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMK1_9PHAE1.040e-665.12Integrase catalytic domain-containing protein (Fra... [more]
D8LL58_ECTSI2.090e-663.41NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FXH0_ECTSI2.110e-664.29Tetratricopeptide repeat containing protein n=1 Ta... [more]
A0A6H5LJA6_9PHAE6.070e-668.42NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10821contigEcto-sp13_S_contig10821:81..1308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score60.1
Seed ortholog evalue1.4e-06
Seed eggNOG ortholog2880.D7G722
Model size612
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size612
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462557.202518-CDS-Ecto-sp13_S_contig10821:80..1971681462557.202518-CDS-Ecto-sp13_S_contig10821:80..197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 81..197 -
1681462557.2165635-CDS-Ecto-sp13_S_contig10821:278..3891681462557.2165635-CDS-Ecto-sp13_S_contig10821:278..389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 279..389 -
1681462557.2325978-CDS-Ecto-sp13_S_contig10821:514..6401681462557.2325978-CDS-Ecto-sp13_S_contig10821:514..640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 515..640 -
1681462557.24283-CDS-Ecto-sp13_S_contig10821:759..8851681462557.24283-CDS-Ecto-sp13_S_contig10821:759..885Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 760..885 -
1681462557.253356-CDS-Ecto-sp13_S_contig10821:1176..13081681462557.253356-CDS-Ecto-sp13_S_contig10821:1176..1308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10821 1177..1308 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10821.738.1prot_Ecto-sp13_S_contig10821.738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10821 81..1308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10821.738.1

>prot_Ecto-sp13_S_contig10821.738.1 ID=prot_Ecto-sp13_S_contig10821.738.1|Name=mRNA_Ecto-sp13_S_contig10821.738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
LQGKLTEAESLYERCRAMKEKVLGPEHPSLATTLNNLARLLQRQGKFAKA
EPLYRRATEIWERALGLEHPDVAVALNNWTILLVKQGKLEKAIEVKRKGL
AIEERVLPPDHPQKASSLSNLASLMESQGNYDDAKPLYERSLAMSKKVMG
PDHPDVTTGLNIMGGGKYDEAERLYERSLAIRERALGPRHPVVAQSLNNR
AGLW
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mRNA from alignment at Ecto-sp13_S_contig10821:81..1308-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10821.738.1 ID=mRNA_Ecto-sp13_S_contig10821.738.1|Name=mRNA_Ecto-sp13_S_contig10821.738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10821:81..1308- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGGCAAGTTGACCGAGGCGGAGTCTCTCTATGAGCGTTGTCGGGC
GATGAAGGAGAAGGTTCTTGGTCCTGAGCACCCAAGCTTGGCCACAACTC
TCAACAACCTAGCAAGGTTGTTACAGCGTCAGGTGAGAATCTAAGAAATT
TCCCAAGAAATTTGGTAGGGTTCAAATATGTTTGGAAAGTTCAGTTTCAT
CTCTCGACCACTCGCTCACCCCACCCCACTGCTTACTTTACAGGGCAAGT
ACGACGAAGCTGACCCTCTGTACCTTCGCGCTATTGAGATTGGACAGCGA
ACCCTGGGCCTGACCACGCAGATCTTGCCACGCGGTTTAACAGGGTGATT
GAACAGTTGTTCCACCGCTGTCAAATACACAAGTATTGACCGCACTACCG
ACGCTTGCCCCTTTATGTCTTAGGGAAAGTTTGCCAAGGCCGAGCCTCTG
TACAGGCGAGCCACCGAAATTTGGGAGAGGGCGTTGGGCCTCGAGCACCC
GGACGTGGCCGTAGCGCTCAACAACTGGACGATTTTGTTGGTGAAGCAGG
TAAGAGCAGTTCGAAAATACCAGGAAATACCGTGTGTAAATTCGTGTGTG
AAGTGATTCCATTTCTGTAACACTGCGTTGCACCCCTCCCTCGCAACATC
CCAACACTTGTTGCAAAGGGTAAGCTTGAAAAAGCCATAGAGGTGAAGCG
CAAAGGCTTGGCTATCGAGGAGAGAGTGCTACCACCCGACCATCCACAAA
AGGCTTCATCGCTCAGCAACCTGGCGAGTTTGATGGAGAGTCAGGTGAGA
GTCGACCCCTTGGATGTATCGACCACTGGACAATTGTTGGTTTGAATCAT
TCAGAGTTGGGTGCCCAACTACCGTACGCCATGGCCCTCACGACGACATC
CCACCTTGTGGCTGCATAGGGCAACTACGACGACGCCAAGCCGCTGTACG
AGCGCTCGCTGGCCATGAGTAAAAAGGTTATGGGCCCTGACCACCCGGAC
GTCACTACCGGCCTCAACATCATGGGCGGGGTTGTTGAGCATTTGTTCCT
CCGCAGTAACTTTGCTTCAGTAGCTGTAACCGCACCATCCCGCTCGTACC
TCGGGTTTTAGGGCAAGTACGACGAAGCTGAGCGGTTATACGAGCGTTCC
TTGGCCATCCGCGAGAGGGCGCTAGGGCCTCGTCACCCTGTCGTGGCCCA
GTCGCTCAACAACAGGGCGGGGTTGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10821:81..1308-

>mRNA_Ecto-sp13_S_contig10821.738.1 ID=mRNA_Ecto-sp13_S_contig10821.738.1|Name=mRNA_Ecto-sp13_S_contig10821.738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10821:81..1308- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCAGGGCAAGTTGACCGAGGCGGAGTCTCTCTATGAGCGTTGTCGGGC
GATGAAGGAGAAGGTTCTTGGTCCTGAGCACCCAAGCTTGGCCACAACTC
TCAACAACCTAGCAAGGTTGTTACAGCGTCAGGGAAAGTTTGCCAAGGCC
GAGCCTCTGTACAGGCGAGCCACCGAAATTTGGGAGAGGGCGTTGGGCCT
CGAGCACCCGGACGTGGCCGTAGCGCTCAACAACTGGACGATTTTGTTGG
TGAAGCAGGGTAAGCTTGAAAAAGCCATAGAGGTGAAGCGCAAAGGCTTG
GCTATCGAGGAGAGAGTGCTACCACCCGACCATCCACAAAAGGCTTCATC
GCTCAGCAACCTGGCGAGTTTGATGGAGAGTCAGGGCAACTACGACGACG
CCAAGCCGCTGTACGAGCGCTCGCTGGCCATGAGTAAAAAGGTTATGGGC
CCTGACCACCCGGACGTCACTACCGGCCTCAACATCATGGGCGGGGGCAA
GTACGACGAAGCTGAGCGGTTATACGAGCGTTCCTTGGCCATCCGCGAGA
GGGCGCTAGGGCCTCGTCACCCTGTCGTGGCCCAGTCGCTCAACAACAGG
GCGGGGTTGTGG
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