mRNA_Ecto-sp13_S_contig10810.730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 509 bits (1310), Expect = 2.700e-171 Identity = 355/442 (80.32%), Postives = 363/442 (82.13%), Query Frame = 1
Query: 1 GADCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAPAXXXXGTATPSM------------TTTAPEPTXXXXXXXXXXSTTTTIAPSSASPTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCYDNIINAGLVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSGGGTNRIAGGGRG-RVLLVLPWAVSALLNAAGFRRLYNY 1287
G+DCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSA EAATPAPAXXXX TTTAP XXXXXXX IAPSS SPTES XXXXXXXXXXXXXXXXXXX GSFTPVAPVAGA+S CENGY GWQ+NEACCSEFCGQCGGSGCGELGSATCCYDNII+AGLVCGVDVLEAPCIIIN+TPAPLAEG TA PA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VATESPVSRGDVGVPTPSPGG EAPQESV P VTPPVGG VGTTPAPS PECDD I GFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSE+GVAPCVLGPVS+VDGAADADTTTSSG NRIAGGGRG RVLLVLPWAVSAL+N AGFR LYNY
Sbjct: 44 GSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXX--------IAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVTA---PATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLGPVSQVDGAADADTTTSSGEAANRIAGGGRGVRVLLVLPWAVSALINTAGFR-LYNY 466
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI) HSP 1 Score: 493 bits (1268), Expect = 5.940e-165 Identity = 365/454 (80.40%), Postives = 372/454 (81.94%), Query Frame = 1
Query: 1 GADCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAPAXXXXGTA----------TPSMTTTAPEPTXXXXXXXXXXSTTTTIAPSSASPTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGS--------------FTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCYDNIINAGLVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSGGGTNRIAGGGRG-RVLLVLPWAVSALLNAAGFRRLYNY 1287
G++CCVD ILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPA XXXX TPSMTTTAP PT XXXX P+ + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX FTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCC+DNIINAG VCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXX ATESPVSRG VG PT SPGG EAPQESVA PVGGGVGTTPAPSTPEC D I GFRHGVACCSVSCGQCGG GCE LEGGA ECCSHDVL TN+ CSETG APCVLGPVSEVDGAADADTTTSSG NRIAGGGRG RVLLVLPWAVSA+LNAAGFR LYNY
Sbjct: 15 GSECCVDHILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAXXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGEAPCVLGPVSEVDGAADADTTTSSGRAANRIAGGGRGGRVLLVLPWAVSAMLNAAGFR-LYNY 467
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.080e-26 Identity = 91/258 (35.27%), Postives = 119/258 (46.12%), Query Frame = 1
Query: 394 TPVAPVAGAT-----SNCENGYAGWQNNEACCSEFCGQCGGSGCGEL----GSATCCYDNII--NAGLVCGVDVLEAPCIIINFTPAPL--AEGETAAPL-PAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEG--GASECCSHDVLATNNLCSETGVAPCVL 1119
T +P AGA+ S C NG G + + CC E CGQCGG GCG + G++ CC D I + G+ CG EAPC++ FTP+PL A TAAP+ P+ S + V G+ +P +E Y P G GTT T C + I+G++ G ACC+ +CGQCGG GC ++ G GAS CCS DV NLCS TGV+PCV+
Sbjct: 275 TSTSPTAGASDPVAPSTCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCG----EAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE------APCIIEG-------YTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVI 515
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.320e-9 Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query: 943 CDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSG 1176
C + + G+ + ACCSV CG CGG GC L GA CC+ +++A CSE G APC++ D D T S+G
Sbjct: 381 CSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIM----------DTDQTCSNG 448
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.540e-9 Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 919 TPAPS----TPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVL 1119
TP+P+ C + + G+ ACCSV CG CGG GC L GA CC+ +++A CSE G APC++
Sbjct: 388 TPSPAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSEKGAAPCIM 458
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A150PLJ6_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PLJ6_SORCE) HSP 1 Score: 62.8 bits (151), Expect = 1.950e-6 Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1
Query: 961 GFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVL 1119
G + G CC SCG CGGAGC GGAS CC+ ++L N C+ T APCVL
Sbjct: 607 GVQSGNVCCKASCGTCGGAGCSGRPGGASACCTSNILDANKTCTGTN-APCVL 658
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A835YLW4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 5.340e-6 Identity = 35/85 (41.18%), Postives = 44/85 (51.76%), Query Frame = 1
Query: 943 CDDSIVGFRHG--VACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGV-APCVL-----GPVSEVDGAADADTTTSS 1173
C + G G CC CG+CGG GC+N GGAS+CC+ ++ AT+ LC+ T V APC GP D D T SS
Sbjct: 77 CGMDLSGILSGDKSVCCPARCGKCGGTGCQNFPGGASQCCTTNIQATDLLCAGTAVPAPCSFAKTLGGPTVTCATKTDCDLTASS 161
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A2S1JQZ9_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer sp. A4B17 TaxID=359370 RepID=A0A2S1JQZ9_9GAMM) HSP 1 Score: 57.4 bits (137), Expect = 6.750e-5 Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query: 430 CENGYAG-WQNNEACCSEFCGQCGGSGCGEL--GSATCCYDNIINAGLVCGVDVLEAPC 597
CEN G + N ACCS FCG CGG GCG+L GS CC I+N+ +C APC
Sbjct: 375 CENEKGGIYSGNGACCSSFCGACGGPGCGQLNGGSRACCTLEILNSAPLCSYPGQTAPC 433 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10810.730.1 >prot_Ecto-sp13_S_contig10810.730.1 ID=prot_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=374bp MTTTAPEPTAPAAPAAPAASTTTTIAPSSASPTESLTATAQPAAAAVVVAback to top mRNA from alignment at Ecto-sp13_S_contig10810:123..4170+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10810.730.1 ID=mRNA_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4048bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10810:123..4170+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10810:123..4170+ >mRNA_Ecto-sp13_S_contig10810.730.1 ID=mRNA_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10810:123..4170+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |