mRNA_Ecto-sp13_S_contig10810.730.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10810.730.1
Unique NamemRNA_Ecto-sp13_S_contig10810.730.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A6H5JJ70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE)

HSP 1 Score: 509 bits (1310), Expect = 2.700e-171
Identity = 355/442 (80.32%), Postives = 363/442 (82.13%), Query Frame = 1
Query:    1 GADCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAPAXXXXGTATPSM------------TTTAPEPTXXXXXXXXXXSTTTTIAPSSASPTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCYDNIINAGLVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSGGGTNRIAGGGRG-RVLLVLPWAVSALLNAAGFRRLYNY 1287
            G+DCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSA EAATPAPAXXXX                   TTTAP   XXXXXXX        IAPSS SPTES                 XXXXXXXXXXXXXXXXXXX GSFTPVAPVAGA+S CENGY GWQ+NEACCSEFCGQCGGSGCGELGSATCCYDNII+AGLVCGVDVLEAPCIIIN+TPAPLAEG TA   PA   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       VATESPVSRGDVGVPTPSPGG EAPQESV P VTPPVGG VGTTPAPS PECDD I GFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSE+GVAPCVLGPVS+VDGAADADTTTSSG   NRIAGGGRG RVLLVLPWAVSAL+N AGFR LYNY
Sbjct:   44 GSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAPGQXXXXXXXX--------IAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGASSYCENGYPGWQSNEACCSEFCGQCGGSGCGELGSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPLAEGVTA---PATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------VATESPVSRGDVGVPTPSPGGSEAPQESVPPSVTPPVGGAVGTTPAPSAPECDDGIEGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSESGVAPCVLGPVSQVDGAADADTTTSSGEAANRIAGGGRGVRVLLVLPWAVSALINTAGFR-LYNY 466          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7G8G7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8G7_ECTSI)

HSP 1 Score: 493 bits (1268), Expect = 5.940e-165
Identity = 365/454 (80.40%), Postives = 372/454 (81.94%), Query Frame = 1
Query:    1 GADCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAPAXXXXGTA----------TPSMTTTAPEPTXXXXXXXXXXSTTTTIAPSSASPTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGS--------------FTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCYDNIINAGLVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSGGGTNRIAGGGRG-RVLLVLPWAVSALLNAAGFRRLYNY 1287
            G++CCVD ILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPA  XXXX             TPSMTTTAP PT      XXXX       P+  +    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                FTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCC+DNIINAG VCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXX     XXXXXXX ATESPVSRG VG PT SPGG EAPQESVA     PVGGGVGTTPAPSTPEC D I GFRHGVACCSVSCGQCGG GCE LEGGA ECCSHDVL TN+ CSETG APCVLGPVSEVDGAADADTTTSSG   NRIAGGGRG RVLLVLPWAVSA+LNAAGFR LYNY
Sbjct:   15 GSECCVDHILDSDVTCGVDDGVAPCIVDPDIITTPSAAEAATPAXXXXXXXXXXXXXXXXXXXTPSMTTTAPGPTATPSMTXXXXXXXXXXXPTPTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTPVAPVAGATSNCENGYAGWQNNEACCSEFCGQCGGSGCGELGSATCCFDNIINAGKVCGVDVLEAPCIIINFTPAPLAEGETAAPLPAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAETEXXXXXXXXATESPVSRGGVGTPTSSPGGSEAPQESVAXXXXXPVGGGVGTTPAPSTPECADGIEGFRHGVACCSVSCGQCGGTGCEYLEGGALECCSHDVLTTNSSCSETGEAPCVLGPVSEVDGAADADTTTSSGRAANRIAGGGRGGRVLLVLPWAVSAMLNAAGFR-LYNY 467          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7FZM1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 1.080e-26
Identity = 91/258 (35.27%), Postives = 119/258 (46.12%), Query Frame = 1
Query:  394 TPVAPVAGAT-----SNCENGYAGWQNNEACCSEFCGQCGGSGCGEL----GSATCCYDNII--NAGLVCGVDVLEAPCIIINFTPAPL--AEGETAAPL-PAPTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGTTPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEG--GASECCSHDVLATNNLCSETGVAPCVL 1119
            T  +P AGA+     S C NG  G  + + CC E CGQCGG GCG +    G++ CC D I   + G+ CG    EAPC++  FTP+PL  A   TAAP+ P+  S                                            + V  G+      +P  +E        Y   P   G GTT    T  C + I+G++ G ACC+ +CGQCGG GC ++ G  GAS CCS DV    NLCS TGV+PCV+
Sbjct:  275 TSTSPTAGASDPVAPSTCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCG----EAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGE------APCIIEG-------YTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVI 515          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: D7FY01_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY01_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.320e-9
Identity = 32/78 (41.03%), Postives = 43/78 (55.13%), Query Frame = 1
Query:  943 CDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSG 1176
            C + + G+ +  ACCSV CG CGG GC  L  GA  CC+ +++A    CSE G APC++          D D T S+G
Sbjct:  381 CSNGLAGYENSGACCSVGCGTCGGEGCSQLGEGAESCCTSNIIAAREPCSEKGAAPCIM----------DTDQTCSNG 448          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A6H5JP22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP22_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.540e-9
Identity = 30/71 (42.25%), Postives = 41/71 (57.75%), Query Frame = 1
Query:  919 TPAPS----TPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVL 1119
            TP+P+       C + + G+    ACCSV CG CGG GC  L  GA  CC+ +++A    CSE G APC++
Sbjct:  388 TPSPAPVMEAQTCSNGLAGYEKSGACCSVGCGTCGGEGCSQLGQGAESCCTSNIIAAGEPCSEKGAAPCIM 458          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A150PLJ6_SORCE (Uncharacterized protein n=1 Tax=Sorangium cellulosum TaxID=56 RepID=A0A150PLJ6_SORCE)

HSP 1 Score: 62.8 bits (151), Expect = 1.950e-6
Identity = 28/53 (52.83%), Postives = 33/53 (62.26%), Query Frame = 1
Query:  961 GFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGVAPCVL 1119
            G + G  CC  SCG CGGAGC    GGAS CC+ ++L  N  C+ T  APCVL
Sbjct:  607 GVQSGNVCCKASCGTCGGAGCSGRPGGASACCTSNILDANKTCTGTN-APCVL 658          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A835YLW4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLW4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 5.340e-6
Identity = 35/85 (41.18%), Postives = 44/85 (51.76%), Query Frame = 1
Query:  943 CDDSIVGFRHG--VACCSVSCGQCGGAGCENLEGGASECCSHDVLATNNLCSETGV-APCVL-----GPVSEVDGAADADTTTSS 1173
            C   + G   G    CC   CG+CGG GC+N  GGAS+CC+ ++ AT+ LC+ T V APC       GP        D D T SS
Sbjct:   77 CGMDLSGILSGDKSVCCPARCGKCGGTGCQNFPGGASQCCTTNIQATDLLCAGTAVPAPCSFAKTLGGPTVTCATKTDCDLTASS 161          
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Match: A0A2S1JQZ9_9GAMM (Uncharacterized protein n=1 Tax=Microbulbifer sp. A4B17 TaxID=359370 RepID=A0A2S1JQZ9_9GAMM)

HSP 1 Score: 57.4 bits (137), Expect = 6.750e-5
Identity = 29/59 (49.15%), Postives = 34/59 (57.63%), Query Frame = 1
Query:  430 CENGYAG-WQNNEACCSEFCGQCGGSGCGEL--GSATCCYDNIINAGLVCGVDVLEAPC 597
            CEN   G +  N ACCS FCG CGG GCG+L  GS  CC   I+N+  +C      APC
Sbjct:  375 CENEKGGIYSGNGACCSSFCGACGGPGCGQLNGGSRACCTLEILNSAPLCSYPGQTAPC 433          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10810.730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JJ70_9PHAE2.700e-17180.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8G7_ECTSI5.940e-16580.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZM1_ECTSI1.080e-2635.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FY01_ECTSI1.320e-941.03Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5JP22_9PHAE2.540e-942.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A150PLJ6_SORCE1.950e-652.83Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A835YLW4_9STRA5.340e-641.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A2S1JQZ9_9GAMM6.750e-549.15Uncharacterized protein n=1 Tax=Microbulbifer sp. ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10810contigEcto-sp13_S_contig10810:123..4170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score74.7
Seed ortholog evalue1e-10
Seed eggNOG ortholog2880.D7FJ68
Preferred nameMTPAP
Model size2228
KEGG koko:K08342,ko:K16462,ko:K17478,ko:K18060
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.importin-alpha family protein binding
EggNOG OGsCOG0086@1,KOG0260@2759,KOG4725@1,KOG4725@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_002960.1
EC2.7.7.19
Cds size1122
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko01009,ko03029,ko03036,ko03110,ko04131,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10810.730.1prot_Ecto-sp13_S_contig10810.730.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10810 291..3232 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462556.4101975-UTR-Ecto-sp13_S_contig10810:122..2901681462556.4101975-UTR-Ecto-sp13_S_contig10810:122..290Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10810 123..290 +
1681462556.5002267-UTR-Ecto-sp13_S_contig10810:3232..41701681462556.5002267-UTR-Ecto-sp13_S_contig10810:3232..4170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10810 3233..4170 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462556.434018-CDS-Ecto-sp13_S_contig10810:290..5401681462556.434018-CDS-Ecto-sp13_S_contig10810:290..540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10810 291..540 +
1681462556.4481602-CDS-Ecto-sp13_S_contig10810:1093..11711681462556.4481602-CDS-Ecto-sp13_S_contig10810:1093..1171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10810 1094..1171 +
1681462556.4575248-CDS-Ecto-sp13_S_contig10810:1827..22711681462556.4575248-CDS-Ecto-sp13_S_contig10810:1827..2271Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10810 1828..2271 +
1681462556.4668841-CDS-Ecto-sp13_S_contig10810:2533..27191681462556.4668841-CDS-Ecto-sp13_S_contig10810:2533..2719Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10810 2534..2719 +
1681462556.4769313-CDS-Ecto-sp13_S_contig10810:3068..32321681462556.4769313-CDS-Ecto-sp13_S_contig10810:3068..3232Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10810 3069..3232 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10810.730.1

>prot_Ecto-sp13_S_contig10810.730.1 ID=prot_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=374bp
MTTTAPEPTAPAAPAAPAASTTTTIAPSSASPTESLTATAQPAAAAVVVA
APSAQPSVATPTAAVATASPVAGSFTPVAPVAGATSNCENGYAGWQNNEA
CCSEFCGQCGGSGCGELGSATCCYDNIINAGLVCGVDVLEAPCIIINFTP
APLAEGETAAPLPAPTSPAPATAAPATAAPFTVSPDTAAPAPAAPAAETE
APSTPAPVATESPVSRGDVGVPTPSPGGLEAPQESVAPYVTPPVGGGVGT
TPAPSTPECDDSIVGFRHGVACCSVSCGQCGGAGCENLEGGASECCSHDV
LATNNLCSETGVAPCVLGPVSEVDGAADADTTTSSGGGTNRIAGGGRGRV
LLVLPWAVSALLNAAGFRRLYNY*
back to top

mRNA from alignment at Ecto-sp13_S_contig10810:123..4170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10810.730.1 ID=mRNA_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4048bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10810:123..4170+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGGACTGCTGCGTGGACGACATCCTGGACAGCGACGTCACGTGCGG GGTCGACGACGGGGTGGCCCCGTGCATCGTCGACCCCGACATCATCACCA CCCCGTCGGCGGCGGAGGCGGCCACGCCGGCGCCGGCTGCGCCAGCGGCG GGAACGGCGACTCCGTCGATGACGACGACGGCCCCGGAGCCGACGGCGCC GGCTGCGCCGGCTGCGCCGGCGGCGTCGACTACTACTACTATCGCACCGA GCAGCGCCTCGCCTACGGAAAGCTTGACGGCGACCGCGCAGCCCGCGGCG GCGGCGGTGGTGGTGGCCGCGCCCAGCGCCCAGCCCTCGGTCGCGACGCC GACGGCGGCGGTCGCGACCGCTTCGCCGGTGGCGGGCTCGTTCACTCCGG TTGCTCCAGTCGCAGGCGGTGAGTGTGTTTTCTCGCGCTTGTGTGCTACA ATTGCACCGTGCGGCGCTTGGGTGGTGGTTGTTTTTTTGCGCCAGCCCGG TCGTTCCTCCGAGTCGTTGGTCCTGTCGATTGGGAAAAAACGTGGAGGTC TGGGTCGTTTTTTTTCAGCAGTCGATTGGACCGTGTGCCAGTGGGTCGGC TCGTACCTTGGGGCCCATGCATCCGTTCTTGTTGTGCTTCTCTCGTGTGC GTGTGAAGGACGGAGTGTTGAGACCCCGCGGCCCTCTCGTGCTCTAATGC GGGCCCTCGACGACTCTCGTTGTGACAATATATTTTGGTTGGCCTTTTCG GCGTGTTTCAGTGTAATCCCCGACAACATGTTTTTTTCCCGATGCTTTGC TCTGAGCTCCCTCCCCCAGACGGACCCAACTGACCCACCCACCTACAATG CACATCCATACCCACCCACCGCGTCCTCAACTCCACCGCCCCCCCCCCCC TCCTCATTCGCGTCGCGTCCTCCTCCTGCGATGTGGACGAACCACACGGG CGATGCCACACGAACGTGCAGCCACTTCAAACTGCGAGAACGGCTACGCG GGGTGGCAGAATAACGAAGCCTGTTGCTCCGAGTTCTGCGGGCAGTGCGG TGAGTAGCTTTTTTTCTGCAGTACACATGAGTAGGCGAGCATTATGCAGG GGGCAGTGTGGATGGACGCGTTCTAGGCGTTTTGATTAACACAGCCGAGA GAGGCGGCCCGAAAAGTACAAACCTAAAGCATTCATTCTCCTCACGAGAT TTTTTTTTGTTTTAATTTATGTTATGAGGTTCGCGTGGGGTGAGTTGCTG GCCAGGAGACCCCGCTGAACGTGGTTCTTACAGCTTGGGAAGGGAGCAGG TTATTTTCGGCCTTGATAGACGCGTCCTTGCATGCATGTACGGATATGTG TGTTGCTGCTGTCGATGTTGCTTCTTCCTTGTCGCGTGTCTCCCCTGCCC AGTCGTCCGCACGCGAAGCACACCGCCCACACACGCACACACAAACCCTC GCCACTCTCTCTCTCTCTCACAAACACACACACACACACAGGGGTCCCAG ACCACGGCCCTTGGTAGAGAAGCGTTCTCCGTTCTTTTTTTCCGCACTGA GACTGACGTTTTTTCATTGGTTTCAACCGATTACAGCAGTCGCAGCAGCA GCAGCAGCAGCAGCAGCGCGGTTCCGATGCTAGGTGCCGTAGTTGATACA GAGACAAACCACACCACACAAAGCGCCCCCACGCTGACCACCACACGTGT TGCAGGCGGCTCCGGGTGCGGGGAACTCGGGTCGGCCACCTGCTGCTACG ACAACATCATCAACGCGGGGCTGGTCTGCGGCGTCGACGTCCTGGAGGCC CCGTGCATCATCATCAACTTCACGCCGGCCCCCCTCGCCGAAGGCGAGAC CGCAGCGCCTCTCCCCGCCCCGACCTCCCCGGCCCCGGCCACCGCCGCGC CCGCGACTGCGGCTCCCTTTACGGTGTCTCCGGACACCGCGGCTCCCGCA CCTGCGGCACCGGCGGCGGAGACGGAAGCGCCGTCGACTCCGGCTCCTGT TGCGACGGAGTCCCCGGTGTCGCGCGGCGACGTCGGCGTGCCAACGCCGT CTCCTGGGGGGTTGGAGGCGCCGCAAGAGTCGGTGGCGCCGTACGTTACG CCGCCGGTGGGGGGAGGGGTGGGGACGACTCCAGCTCCCAGCACTCCAGG TGTGTTGGGTGGGTGGGGGAGTGTTTCTTTTGGTGGTTACAAGAATTGTA GCATTCACCGCTGGAATCTGCTTACCAGTGAAAAGAGGCAGGGCGAAAAT GCCGCCGAAGTAGTGAGCGTTTACACGTGTGCCTCACAACGTAACCCGTG CCGGTGGGACGACCCCGCCCAGTTCTTTTGTCTCGCCGACGCTGTCCTAC AAACATGCAAACCTTCCCCCGTTGTCTCTCCCCGCGCGGATGTAATGTGG TGCCACTCCAGAGTGTGACGACAGCATCGTAGGCTTTCGTCACGGGGTGG CGTGCTGCTCGGTTTCGTGCGGCCAGTGCGGCGGGGCGGGGTGCGAGAAC CTTGAGGGAGGCGCGTCGGAGTGCTGCTCGCACGACGTCCTCGCCACCAA CAATTTGTGCAGCGAGACGGGGGTGGCGCCGTGTGTCCTTGGCCCGGGTA GGTTACAGCACGCGGCGTGGCTTTTCTCCGGCTTTTTGGGAGAGAGGGGC GGGGCGATGTTGTCGTGTGTGACGGAGCGTGTGAGGTTTCGTTAGAGTTT TGATGTTTCGGATTTATGTATGATTGAGAGCTTTTGCGCTTGGATCCTTC CCGCCGTCTGTGCATCCCATCACGCCAACGAACGAATGCAGCCCCACGAT AACTCTAGTCTCGAGACTGACAACCACCGTCAAGCATGGCAACGACGAGG TAACCCCCCCCCCCCCCCCCCCCCCCCGGGTTTGCCTTACCGCTTCCTGC CGGGAGCCGGAGGTGCGCGACGGTATCGCCACAAAAAAAAAAACAGTGAG CGAAGTGGATGGGGCTGCCGACGCCGATACGACAACGAGCTCAGGGGGGG GCACGAACAGGATAGCGGGGGGGGGCAGAGGACGGGTGTTGTTGGTGTTG CCTTGGGCTGTTTCCGCGCTGCTAAACGCGGCGGGCTTTCGCCGTCTGTA CAACTATTAGCGAGCTTTTGATGTCTTCTGTCAATGGAGTAGAGGGGGGC GGCGTTGTCAGTTTTTCAGCTGTACAAGTAGCTGTAGGGGCTGGATGAAT GATGCGAGAGCGGAGCTGAAACAGTCTAACGTTGGGAGGATGGGCCTTGG TGTCCTCTGTTTTACTTGCTATACGTGTTTTATAGTTTTGTGTGTGTGTC GTGTGGTGCCCGTTGAGGGGGAGGGGGGGGGGCTCGGTTAATACCCCGCC CCGCTGTGTGCTCGTTTTGCGTTGGAAGTTCAATGAAAGGTATTGCTGTG TAGAAGGTGATGTTTGATTTTCTCTTGGCCTCCCCGTCGGGGCGGTGGAT TCGACCTCTTTAGCCCTTGGTTGTACTCGCGTCTGTTTTTTTCGTCTCTA CTCAACCAACAGCTTGATCGTTGGAATTTTCGAGCAGTGTGCATGCTGCT TCTTCTCGTGCGTTGTTCGCGGAATGCATATAAATGCGCAGCACGGACAC CAAGAATTGCCTCTTTCGAGTGATGCGAGGCCTGTCGGGCTCGCTTTTTC CTTGCCCACCTTCACAAGGCCAGTTCTTGTACTTCAGTGAGAGCATGACA ACTCAAAGCTACTGTACCGTACCGTTTTTTTTCTTCTTGTTTTCCGGTCT TCCCCATATGGGAGTTCGTCGGTCGGTGGAGGCGTCTTTTCCCTCAGGGC TGCTGAGACCAGCAACCGTGTGGCACGGAGGTTTCAGGGGCAGTGGTTAA GAAGGAATTGCGCCGGGGGGGGCGGTTCACTGGCTTGTCGTGTGCCGCCT TTGTATCCTTCGATCATCGGCCGAGTTTGTCCGTGTTTGACACGGAGATC GCCGTTCCTTTCCTTTCCCGGAATAACCCGCTTCCGGGTGCTCTGTCTGA ACGGCAAACTTTTTACGCAAGTTTCGTTTTCGGGGGTATGGACGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10810:123..4170+

>mRNA_Ecto-sp13_S_contig10810.730.1 ID=mRNA_Ecto-sp13_S_contig10810.730.1|Name=mRNA_Ecto-sp13_S_contig10810.730.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10810:123..4170+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACGACGGCCCCGGAGCCGACGGCGCCGGCTGCGCCGGCTGCGCC
GGCGGCGTCGACTACTACTACTATCGCACCGAGCAGCGCCTCGCCTACGG
AAAGCTTGACGGCGACCGCGCAGCCCGCGGCGGCGGCGGTGGTGGTGGCC
GCGCCCAGCGCCCAGCCCTCGGTCGCGACGCCGACGGCGGCGGTCGCGAC
CGCTTCGCCGGTGGCGGGCTCGTTCACTCCGGTTGCTCCAGTCGCAGGCG
CCACTTCAAACTGCGAGAACGGCTACGCGGGGTGGCAGAATAACGAAGCC
TGTTGCTCCGAGTTCTGCGGGCAGTGCGGCGGCTCCGGGTGCGGGGAACT
CGGGTCGGCCACCTGCTGCTACGACAACATCATCAACGCGGGGCTGGTCT
GCGGCGTCGACGTCCTGGAGGCCCCGTGCATCATCATCAACTTCACGCCG
GCCCCCCTCGCCGAAGGCGAGACCGCAGCGCCTCTCCCCGCCCCGACCTC
CCCGGCCCCGGCCACCGCCGCGCCCGCGACTGCGGCTCCCTTTACGGTGT
CTCCGGACACCGCGGCTCCCGCACCTGCGGCACCGGCGGCGGAGACGGAA
GCGCCGTCGACTCCGGCTCCTGTTGCGACGGAGTCCCCGGTGTCGCGCGG
CGACGTCGGCGTGCCAACGCCGTCTCCTGGGGGGTTGGAGGCGCCGCAAG
AGTCGGTGGCGCCGTACGTTACGCCGCCGGTGGGGGGAGGGGTGGGGACG
ACTCCAGCTCCCAGCACTCCAGAGTGTGACGACAGCATCGTAGGCTTTCG
TCACGGGGTGGCGTGCTGCTCGGTTTCGTGCGGCCAGTGCGGCGGGGCGG
GGTGCGAGAACCTTGAGGGAGGCGCGTCGGAGTGCTGCTCGCACGACGTC
CTCGCCACCAACAATTTGTGCAGCGAGACGGGGGTGGCGCCGTGTGTCCT
TGGCCCGGTGAGCGAAGTGGATGGGGCTGCCGACGCCGATACGACAACGA
GCTCAGGGGGGGGCACGAACAGGATAGCGGGGGGGGGCAGAGGACGGGTG
TTGTTGGTGTTGCCTTGGGCTGTTTCCGCGCTGCTAAACGCGGCGGGCTT
TCGCCGTCTGTACAACTATTAG
back to top