mRNA_Ecto-sp13_S_contig10751.683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI) HSP 1 Score: 527 bits (1357), Expect = 3.960e-185 Identity = 261/271 (96.31%), Postives = 265/271 (97.79%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
GLVIAVKGTVTASGEMLVDDWCPAGIPPPVP SPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSA+LLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGER+FLGSSGQPLLDMARYTTP+AEADKDAKP CLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFAT ILEGADG K RV+C
Sbjct: 176 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGADGHK-GRVVC 445
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A835YHI6_9STRA (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA) HSP 1 Score: 238 bits (608), Expect = 1.640e-71 Identity = 142/330 (43.03%), Postives = 184/330 (55.76%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKV---------------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLL---SGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLH---------------------------------------------PCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTP--DAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQK 795
G+V+AV+G+V A G+M V+ WCP G+PP PS P GG DPL L +D +AGYLGG D E AR+ RV+VCG+S L SG+ S +L+AEQQR +P++E D LA +A PVD+MP SD +NY LPQ+ H PCLL ASR+ + TNPHEA +G RL LG++GQPL D+ +YT A D+ L+ LE ML+W+H+APTAP+TLGCYPF+TEDPFV+EECP +FFAGNQP+FAT ++EG DGQ+
Sbjct: 175 GIVVAVRGSVRADGDMAVEAWCPPGLPPQ-PSPPEGAAHPPGACLLLVSGMLAGGPQDPLPTRLFLDHLAGYLGGAGDHE-QIARVVRVVVCGNSAXXXXXXLAGAASGSIGSGKLSAEQQRERTAPLRECDAELAQVAV--PVDIMPSASDASNYMLPQRAAHMLFRKRAIQQRKGNIRPNVAAAXXXXXXXXXXXXXXXXXXXXXXHPCLLPLASRYPNARLATNPHEAWVGTRLVLGTAGQPLDDILQYTAAAEGAGGDEGDSARRLQMLENMLRWQHIAPTAPDTLGCYPFLTEDPFVLEECPHVFFAGNQPRFATRLVEGHDGQQ 500
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A1Y1IIY7_KLENI (DNA polymerase delta regulatory subunit 55 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIY7_KLENI) HSP 1 Score: 228 bits (580), Expect = 1.440e-68 Identity = 130/286 (45.45%), Postives = 173/286 (60.49%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVD-----DWCPAGIPPPVPSS---PSKKVG---------GRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRV 807
G+V+AV G A GE V+ D P + PP P++ P + V DPL LLVD + G+LGG + Q+ SAR RV++ GDS+ AP DLL+G + L+A +Q +P++ELD +L LAAA PVDVMPG +DPANY+LPQQPLHPCL AS++ TNPH + FLG++GQP+ D+ RY D P+ L LE L+WRH+APTAP+TL CYPF DPF++ CP ++FAGNQ FAT +L+G DGQ+V +
Sbjct: 138 GVVVAVLGVEQADGEFAVEAVLLPDLPPQPLRPPAPAAGVAPPRYVALVSGLGVGAPGVDPLQTQLLVDHLGGHLGGSQAQQ-LSARTVRVVLAGDSLHAPP-DLLTG----QALSAREQAAAVAPIQELDLLLTQLAAALPVDVMPGSTDPANYSLPQQPLHPCLFPGASQYDTFSAATNPHRFSVDGVDFLGTAGQPVADLLRYCGRD-------DPLAL--LESTLRWRHLAPTAPDTLACYPFTDSDPFLLATCPAVYFAGNQAAFATTLLQGTDGQRVRLI 408
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A7S1XWT2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWT2_9STRA) HSP 1 Score: 226 bits (575), Expect = 3.870e-67 Identity = 129/304 (42.43%), Postives = 166/304 (54.61%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKV---------------------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKD------------------AKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQK 795
GL AV G + A GE +V+DWC G+PPP+ ++ GG DP+ ++LVDFVAG LGG D+ A I RVI+ G+S+A P D K L A Q +A P+ +LD +LA LA+A PVDVMPG D ++ +PQQP H LL A R+ +L+R NP+EA + RL LGSSGQP+ D+ ++T P A K A L LE ML WRHMAPTAP+TL CYPF EDPFV+E CP +FFAGNQ F +++ G K
Sbjct: 170 GLTAAVLGVMGADGEFVVEDWCVPGVPPPLENTNGAVAPKAEPEGDEGPYLLLASGLGFGGATDPMPAAMLVDFVAGRLGGAADRSDVGANICRVILAGNSMA-PLQD--GERLRDKNLPAADQERIAGPLYQLDAMLAQLASACPVDVMPGADDASSVAMPQQPFHRSLLPTACRYSSLQRPPNPYEALVEGRLVLGSSGQPVTDLLKFTRPAAPKPKGENDDGDDEGNATEAEGAAAADFTLSALERMLGWRHMAPTAPDTLPCYPFYNEDPFVLEHCPQVFFAGNQKAFGQRLIDAPGGGK 470
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A2K1KWA5_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWA5_PHYPA) HSP 1 Score: 219 bits (558), Expect = 2.840e-65 Identity = 115/283 (40.64%), Postives = 172/283 (60.78%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSK-----------KVGGRH-DPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
G+V+A+ G GE V+D AG+PP P S K+GG +PL + LLVD + G+LG V++Q S++I R+++ G S+ DL + + ++A+ Q + P+KELD L ++AA PVD+MPG +DPAN++LPQQPLH CL A+ + TNPH+ ++ + LFLG+SGQ + D+++Y+ + D +E L WRH+APTAP+TLGCYPF+ DPF++E CP ++F GNQP +A+ +L G QKV R++C
Sbjct: 145 GVVVAIVGREEKDGEFFVEDVMVAGLPPQKPLKNSDVDKFVLFVSGLKIGGHGTNPLDLQLLVDHLTGHLGEVQEQS-LSSQIVRMVIAGGSL-----DLQTSISNGQPMSAKNQSKLVEPVKELDLALTQISAAMPVDIMPGANDPANFSLPQQPLHKCLFPGATMYNTFVSATNPHQFELDDVLFLGTSGQNIDDLSKYSEAEDRLDF---------MERTLMWRHLAPTAPDTLGCYPFIDRDPFILETCPHVYFCGNQPHYASRLLTGPSAQKV-RLVC 411
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: B8LLG4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LLG4_PICSI) HSP 1 Score: 218 bits (556), Expect = 6.080e-65 Identity = 126/286 (44.06%), Postives = 176/286 (61.54%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP--PVPSSPSKK------------VGG-RHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
G+V A+ G + G+ V AG+PP P+ S S K VG + +PL LLVD+V G+ G E ++ +A+I RVI+ GDSV + LL+G + L ++QR +A P+KELD L LAAA PVD+MPG +DPAN++LPQQPLH CL AS + TNPH+ + FLG+SGQ + D+ +Y+ DA+ D +E LKWRH+APTAP+TLGCYPF DPFV+E+CP ++F GNQ ++A+ +LEG++GQ V R++C
Sbjct: 145 GVVAALHGKEGSDGDFYVQSILEAGLPPQHPLHSGYSLKDNKYIVLVSGLMVGSMKSNPLQFQLLVDYVTGHSGD-EQEQSMAAQIVRVIIAGDSVDMQQS-LLAG----QSLGLKEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKCLFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGKYS--DAKEKLDY-------MERTLKWRHLAPTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRLLEGSEGQVV-RLVC 414
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: UPI0007F003C6 (DNA polymerase delta small subunit n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F003C6) HSP 1 Score: 217 bits (552), Expect = 2.120e-64 Identity = 115/284 (40.49%), Postives = 170/284 (59.86%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVG---------------GRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRV 807
G+V+A+ G T +G+ LV+D AG+PP + P K+G +PL V LLVD + G+LG E ++ +A+I +V++ GDSV P +LL+G + L + Q ++ P+KE+D +L +AA+ P+D+MPG +DP+N+ +PQQPLH CL +++ + K TNPH ++ FLG+SGQ + D +Y+ E + LE LKWRH+APTAP TLGCYPF DPF VE CP ++FAGNQ +F T ++ G+DGQ V +
Sbjct: 143 GIVVALHGKETGAGDFLVEDVLEAGLPPQL--DPPNKLGEDKYVVFVSGLNLGSSSSNPLQVQLLVDHITGHLGD-EKEQNNAAQIVQVVIAGDSVEIPR-ELLNG----QNLAPKDQSRLSEPIKEVDILLTQIAASIPLDIMPGPNDPSNFAMPQQPLHRCLFPSSASYNTFKSCTNPHSFELDGVRFLGTSGQNIHDFEKYSEGSEEVEF---------LERTLKWRHIAPTAPNTLGCYPFTDRDPFFVESCPHVYFAGNQNKFGTRLITGSDGQVVRLI 409
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: UPI001BF810B5 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF810B5) HSP 1 Score: 214 bits (544), Expect = 4.140e-64 Identity = 118/284 (41.55%), Postives = 175/284 (61.62%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP----PVPSSPSKKV---------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
G+V+A+ G T +G+ LV D AG+PP P+ SS K V +PL LLVD + G+LG E ++G +A+I +V GDS+ P LL+G + L ++ Q ++ P+KELD +L +AA+ P+D+MPG +DPAN++LPQQPLH CL +S + + TNPH ++ FLG+SGQ + D+ +Y+ EA KD + +E L+WRH+APTAP TLGCYPF DPF +E CP ++F GNQ ++ T +++G++GQ V R++C
Sbjct: 63 GIVVALHGKETDAGDFLVQDVLEAGLPPQIELPLKSSEDKYVVFVSGLSVGSSTSNPLRFQLLVDHITGHLGD-EKEQGIAAKIVHFVVAGDSIEIPRG-LLNG----QNLASKDQSRLSEPIKELDILLTQIAASLPLDIMPGPNDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNVNDLEKYS----EA-KDK----IEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFIESCPHVYFVGNQNEYKTDLIKGSEGQFV-RLIC 330
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A443PIE3_9MAGN (DNA polymerase delta small subunit isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PIE3_9MAGN) HSP 1 Score: 217 bits (553), Expect = 4.680e-64 Identity = 123/287 (42.86%), Postives = 172/287 (59.93%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPP----PVPSSPSKKV---------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLCEVR 822
GLV+A+ G T+ G+ V D AG+ P P+ S K V +PL + LLVD + G+LG ++Q +++I RV++ G+SV P LL+G + L ++ Q + P KELD L LAAA PVD+MPG DPANY+LPQQPLH CL AS + TNPH ++ FLG+SGQ + D+ +Y+ DA+ D LE L WRH+APTAP TLGCYPF+ +DPF++E CP ++F GNQ ++ T +L+G++GQKV R++C R
Sbjct: 190 GLVVALHGKETSDGDFFVQDILEAGLAPQKPLPLGSDEDKYVVFVSGLSVGSSESNPLQIQLLVDHMTGHLGDAKEQN-IASQIVRVVIVGNSVNVP-VRLLTG----QNLASKDQSKLFEPFKELDIFLTQLAAALPVDIMPGSDDPANYSLPQQPLHRCLFPGASAYNTFVSCTNPHSFELDTVRFLGTSGQNIDDLDKYS--DAKNKLDF-------LERTLHWRHLAPTAPNTLGCYPFIDKDPFLIESCPHVYFIGNQSKYETRLLQGSEGQKV-RLICVPR 460
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A4D9CYY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYY3_9STRA) HSP 1 Score: 218 bits (556), Expect = 6.820e-64 Identity = 124/303 (40.92%), Postives = 172/303 (56.77%), Query Frame = 1
Query: 1 GLVIAVKGTVTASGEMLVDDWCPAGIPPP--------------------------VPSSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILE-----GADGQKVHRVL 810
GLV+A KG G V+D C AG+P V ++ R D L + LL+D+V G+ G +++ +RIGRVIV GD +A A +L K + ++QQ A P K +D +LA LA+A PVDVMPG DP+N+TLPQQP+HPC+L +ASR+ + K V NP+EA + RLFLG++GQ D+AR T P + A L +E+ L WRH+APTAP+TL CYPF +DPFV+ P ++FAGNQP FA ++E GA+G++ + L
Sbjct: 195 GLVVAAKGRAVG-GRFFVEDVCAAGMPEQEAGPEGXXXXXXXXXXXGGRGREPQYVMLMSGLRLSDRSDLLPLQLLIDYVQGHAGTADEKRRLVSRIGRVIVAGDLLAPFEASILK----EKHMTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYASFKTVPNPYEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQPAFAARLVEEGKEGGAEGKEGKKCL 492 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10751.683.1 >prot_Ecto-sp13_S_contig10751.683.1 ID=prot_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVGGRHDPLLVSLLback to top mRNA from alignment at Ecto-sp13_S_contig10751:113..5260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10751.683.1 ID=mRNA_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5148bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10751:113..5260+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10751:113..5260+ >mRNA_Ecto-sp13_S_contig10751.683.1 ID=mRNA_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10751:113..5260+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |