mRNA_Ecto-sp13_S_contig10751.683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10751.683.1
Unique NamemRNA_Ecto-sp13_S_contig10751.683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: D7FZB3_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZB3_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 3.960e-185
Identity = 261/271 (96.31%), Postives = 265/271 (97.79%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
            GLVIAVKGTVTASGEMLVDDWCPAGIPPPVP SPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSA+LLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGER+FLGSSGQPLLDMARYTTP+AEADKDAKP CLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFAT ILEGADG K  RV+C
Sbjct:  176 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPPSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSAELLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERVFLGSSGQPLLDMARYTTPEAEADKDAKPACLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATSILEGADGHK-GRVVC 445          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A835YHI6_9STRA (DNA polymerase alpha/epsilon subunit B-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHI6_9STRA)

HSP 1 Score: 238 bits (608), Expect = 1.640e-71
Identity = 142/330 (43.03%), Postives = 184/330 (55.76%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKV---------------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLL---SGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLH---------------------------------------------PCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTP--DAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQK 795
            G+V+AV+G+V A G+M V+ WCP G+PP  PS P                   GG  DPL   L +D +AGYLGG  D E   AR+ RV+VCG+S       L    SG+  S +L+AEQQR   +P++E D  LA +A   PVD+MP  SD +NY LPQ+  H                                             PCLL  ASR+   +  TNPHEA +G RL LG++GQPL D+ +YT     A  D+      L+ LE ML+W+H+APTAP+TLGCYPF+TEDPFV+EECP +FFAGNQP+FAT ++EG DGQ+
Sbjct:  175 GIVVAVRGSVRADGDMAVEAWCPPGLPPQ-PSPPEGAAHPPGACLLLVSGMLAGGPQDPLPTRLFLDHLAGYLGGAGDHE-QIARVVRVVVCGNSAXXXXXXLAGAASGSIGSGKLSAEQQRERTAPLRECDAELAQVAV--PVDIMPSASDASNYMLPQRAAHMLFRKRAIQQRKGNIRPNVAAAXXXXXXXXXXXXXXXXXXXXXXHPCLLPLASRYPNARLATNPHEAWVGTRLVLGTAGQPLDDILQYTAAAEGAGGDEGDSARRLQMLENMLRWQHIAPTAPDTLGCYPFLTEDPFVLEECPHVFFAGNQPRFATRLVEGHDGQQ 500          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A1Y1IIY7_KLENI (DNA polymerase delta regulatory subunit 55 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIY7_KLENI)

HSP 1 Score: 228 bits (580), Expect = 1.440e-68
Identity = 130/286 (45.45%), Postives = 173/286 (60.49%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVD-----DWCPAGIPPPVPSS---PSKKVG---------GRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRV 807
            G+V+AV G   A GE  V+     D  P  + PP P++   P + V             DPL   LLVD + G+LGG + Q+  SAR  RV++ GDS+ AP  DLL+G    + L+A +Q    +P++ELD +L  LAAA PVDVMPG +DPANY+LPQQPLHPCL   AS++      TNPH   +    FLG++GQP+ D+ RY   D        P+ L  LE  L+WRH+APTAP+TL CYPF   DPF++  CP ++FAGNQ  FAT +L+G DGQ+V  +
Sbjct:  138 GVVVAVLGVEQADGEFAVEAVLLPDLPPQPLRPPAPAAGVAPPRYVALVSGLGVGAPGVDPLQTQLLVDHLGGHLGGSQAQQ-LSARTVRVVLAGDSLHAPP-DLLTG----QALSAREQAAAVAPIQELDLLLTQLAAALPVDVMPGSTDPANYSLPQQPLHPCLFPGASQYDTFSAATNPHRFSVDGVDFLGTAGQPVADLLRYCGRD-------DPLAL--LESTLRWRHLAPTAPDTLACYPFTDSDPFLLATCPAVYFAGNQAAFATTLLQGTDGQRVRLI 408          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A7S1XWT2_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWT2_9STRA)

HSP 1 Score: 226 bits (575), Expect = 3.870e-67
Identity = 129/304 (42.43%), Postives = 166/304 (54.61%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKV---------------------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKD------------------AKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQK 795
            GL  AV G + A GE +V+DWC  G+PPP+ ++                          GG  DP+  ++LVDFVAG LGG  D+    A I RVI+ G+S+A P  D        K L A  Q  +A P+ +LD +LA LA+A PVDVMPG  D ++  +PQQP H  LL  A R+ +L+R  NP+EA +  RL LGSSGQP+ D+ ++T P A   K                   A    L  LE ML WRHMAPTAP+TL CYPF  EDPFV+E CP +FFAGNQ  F   +++   G K
Sbjct:  170 GLTAAVLGVMGADGEFVVEDWCVPGVPPPLENTNGAVAPKAEPEGDEGPYLLLASGLGFGGATDPMPAAMLVDFVAGRLGGAADRSDVGANICRVILAGNSMA-PLQD--GERLRDKNLPAADQERIAGPLYQLDAMLAQLASACPVDVMPGADDASSVAMPQQPFHRSLLPTACRYSSLQRPPNPYEALVEGRLVLGSSGQPVTDLLKFTRPAAPKPKGENDDGDDEGNATEAEGAAAADFTLSALERMLGWRHMAPTAPDTLPCYPFYNEDPFVLEHCPQVFFAGNQKAFGQRLIDAPGGGK 470          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A2K1KWA5_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1KWA5_PHYPA)

HSP 1 Score: 219 bits (558), Expect = 2.840e-65
Identity = 115/283 (40.64%), Postives = 172/283 (60.78%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSK-----------KVGGRH-DPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
            G+V+A+ G     GE  V+D   AG+PP  P   S            K+GG   +PL + LLVD + G+LG V++Q   S++I R+++ G S+     DL +     + ++A+ Q  +  P+KELD  L  ++AA PVD+MPG +DPAN++LPQQPLH CL   A+ +      TNPH+ ++ + LFLG+SGQ + D+++Y+  +   D          +E  L WRH+APTAP+TLGCYPF+  DPF++E CP ++F GNQP +A+ +L G   QKV R++C
Sbjct:  145 GVVVAIVGREEKDGEFFVEDVMVAGLPPQKPLKNSDVDKFVLFVSGLKIGGHGTNPLDLQLLVDHLTGHLGEVQEQS-LSSQIVRMVIAGGSL-----DLQTSISNGQPMSAKNQSKLVEPVKELDLALTQISAAMPVDIMPGANDPANFSLPQQPLHKCLFPGATMYNTFVSATNPHQFELDDVLFLGTSGQNIDDLSKYSEAEDRLDF---------MERTLMWRHLAPTAPDTLGCYPFIDRDPFILETCPHVYFCGNQPHYASRLLTGPSAQKV-RLVC 411          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: B8LLG4_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=B8LLG4_PICSI)

HSP 1 Score: 218 bits (556), Expect = 6.080e-65
Identity = 126/286 (44.06%), Postives = 176/286 (61.54%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPP--PVPSSPSKK------------VGG-RHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
            G+V A+ G   + G+  V     AG+PP  P+ S  S K            VG  + +PL   LLVD+V G+ G  E ++  +A+I RVI+ GDSV    + LL+G    + L  ++QR +A P+KELD  L  LAAA PVD+MPG +DPAN++LPQQPLH CL   AS +      TNPH+  +    FLG+SGQ + D+ +Y+  DA+   D        +E  LKWRH+APTAP+TLGCYPF   DPFV+E+CP ++F GNQ ++A+ +LEG++GQ V R++C
Sbjct:  145 GVVAALHGKEGSDGDFYVQSILEAGLPPQHPLHSGYSLKDNKYIVLVSGLMVGSMKSNPLQFQLLVDYVTGHSGD-EQEQSMAAQIVRVIIAGDSVDMQQS-LLAG----QSLGLKEQRRLAEPIKELDLALTQLAAAMPVDIMPGPNDPANFSLPQQPLHKCLFSGASAYNTFVSATNPHQFDLDGVCFLGTSGQNIDDLGKYS--DAKEKLDY-------MERTLKWRHLAPTAPDTLGCYPFTDRDPFVIEDCPHVYFCGNQKKYASRLLEGSEGQVV-RLVC 414          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: UPI0007F003C6 (DNA polymerase delta small subunit n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F003C6)

HSP 1 Score: 217 bits (552), Expect = 2.120e-64
Identity = 115/284 (40.49%), Postives = 170/284 (59.86%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVG---------------GRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRV 807
            G+V+A+ G  T +G+ LV+D   AG+PP +   P  K+G                  +PL V LLVD + G+LG  E ++  +A+I +V++ GDSV  P  +LL+G    + L  + Q  ++ P+KE+D +L  +AA+ P+D+MPG +DP+N+ +PQQPLH CL  +++ +   K  TNPH  ++    FLG+SGQ + D  +Y+    E +          LE  LKWRH+APTAP TLGCYPF   DPF VE CP ++FAGNQ +F T ++ G+DGQ V  +
Sbjct:  143 GIVVALHGKETGAGDFLVEDVLEAGLPPQL--DPPNKLGEDKYVVFVSGLNLGSSSSNPLQVQLLVDHITGHLGD-EKEQNNAAQIVQVVIAGDSVEIPR-ELLNG----QNLAPKDQSRLSEPIKEVDILLTQIAASIPLDIMPGPNDPSNFAMPQQPLHRCLFPSSASYNTFKSCTNPHSFELDGVRFLGTSGQNIHDFEKYSEGSEEVEF---------LERTLKWRHIAPTAPNTLGCYPFTDRDPFFVESCPHVYFAGNQNKFGTRLITGSDGQVVRLI 409          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: UPI001BF810B5 (Uncharacterized protein n=1 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF810B5)

HSP 1 Score: 214 bits (544), Expect = 4.140e-64
Identity = 118/284 (41.55%), Postives = 175/284 (61.62%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPP----PVPSSPSKKV---------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLC 813
            G+V+A+ G  T +G+ LV D   AG+PP    P+ SS  K V             +PL   LLVD + G+LG  E ++G +A+I   +V GDS+  P   LL+G    + L ++ Q  ++ P+KELD +L  +AA+ P+D+MPG +DPAN++LPQQPLH CL   +S +   +  TNPH  ++    FLG+SGQ + D+ +Y+    EA KD     +  +E  L+WRH+APTAP TLGCYPF   DPF +E CP ++F GNQ ++ T +++G++GQ V R++C
Sbjct:   63 GIVVALHGKETDAGDFLVQDVLEAGLPPQIELPLKSSEDKYVVFVSGLSVGSSTSNPLRFQLLVDHITGHLGD-EKEQGIAAKIVHFVVAGDSIEIPRG-LLNG----QNLASKDQSRLSEPIKELDILLTQIAASLPLDIMPGPNDPANFSLPQQPLHRCLFPGSSAYNTFRSCTNPHCFELDNIRFLGTSGQNVNDLEKYS----EA-KDK----IEFMERTLRWRHLAPTAPNTLGCYPFTDRDPFFIESCPHVYFVGNQNEYKTDLIKGSEGQFV-RLIC 330          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A443PIE3_9MAGN (DNA polymerase delta small subunit isoform X1 n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A443PIE3_9MAGN)

HSP 1 Score: 217 bits (553), Expect = 4.680e-64
Identity = 123/287 (42.86%), Postives = 172/287 (59.93%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPP----PVPSSPSKKV---------GGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILEGADGQKVHRVLCEVR 822
            GLV+A+ G  T+ G+  V D   AG+ P    P+ S   K V             +PL + LLVD + G+LG  ++Q   +++I RV++ G+SV  P   LL+G    + L ++ Q  +  P KELD  L  LAAA PVD+MPG  DPANY+LPQQPLH CL   AS +      TNPH  ++    FLG+SGQ + D+ +Y+  DA+   D        LE  L WRH+APTAP TLGCYPF+ +DPF++E CP ++F GNQ ++ T +L+G++GQKV R++C  R
Sbjct:  190 GLVVALHGKETSDGDFFVQDILEAGLAPQKPLPLGSDEDKYVVFVSGLSVGSSESNPLQIQLLVDHMTGHLGDAKEQN-IASQIVRVVIVGNSVNVP-VRLLTG----QNLASKDQSKLFEPFKELDIFLTQLAAALPVDIMPGSDDPANYSLPQQPLHRCLFPGASAYNTFVSCTNPHSFELDTVRFLGTSGQNIDDLDKYS--DAKNKLDF-------LERTLHWRHLAPTAPNTLGCYPFIDKDPFLIESCPHVYFIGNQSKYETRLLQGSEGQKV-RLICVPR 460          
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Match: A0A4D9CYY3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CYY3_9STRA)

HSP 1 Score: 218 bits (556), Expect = 6.820e-64
Identity = 124/303 (40.92%), Postives = 172/303 (56.77%), Query Frame = 1
Query:    1 GLVIAVKGTVTASGEMLVDDWCPAGIPPP--------------------------VPSSPSKKVGGRHDPLLVSLLVDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNAEQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLLRNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDAKPVC--LRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQPQFATGILE-----GADGQKVHRVL 810
            GLV+A KG     G   V+D C AG+P                            V      ++  R D L + LL+D+V G+ G  +++    +RIGRVIV GD +A   A +L      K + ++QQ   A P K +D +LA LA+A PVDVMPG  DP+N+TLPQQP+HPC+L +ASR+ + K V NP+EA +  RLFLG++GQ   D+AR T P +     A      L  +E+ L WRH+APTAP+TL CYPF  +DPFV+   P ++FAGNQP FA  ++E     GA+G++  + L
Sbjct:  195 GLVVAAKGRAVG-GRFFVEDVCAAGMPEQEAGPEGXXXXXXXXXXXGGRGREPQYVMLMSGLRLSDRSDLLPLQLLIDYVQGHAGTADEKRRLVSRIGRVIVAGDLLAPFEASILK----EKHMTSKQQEEFALPFKHVDLVLAQLASAVPVDVMPGADDPSNHTLPQQPIHPCILPHASRYASFKTVPNPYEAWLQRRLFLGNAGQIPADLARSTAPPSLPSSPASSAARTLDLMEKTLHWRHLAPTAPDTLACYPFCDDDPFVLPSLPHVYFAGNQPAFAARLVEEGKEGGAEGKEGKKCL 492          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10751.683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZB3_ECTSI3.960e-18596.31Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YHI6_9STRA1.640e-7143.03DNA polymerase alpha/epsilon subunit B-domain-cont... [more]
A0A1Y1IIY7_KLENI1.440e-6845.45DNA polymerase delta regulatory subunit 55 n=1 Tax... [more]
A0A7S1XWT2_9STRA3.870e-6742.43Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2K1KWA5_PHYPA2.840e-6540.64Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
B8LLG4_PICSI6.080e-6544.06Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
UPI0007F003C62.120e-6440.49DNA polymerase delta small subunit n=1 Tax=Daucus ... [more]
UPI001BF810B54.140e-6441.55Uncharacterized protein n=1 Tax=Carya illinoinensi... [more]
A0A443PIE3_9MAGN4.680e-6442.86DNA polymerase delta small subunit isoform X1 n=1 ... [more]
A0A4D9CYY3_9STRA6.820e-6440.92Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10751contigEcto-sp13_S_contig10751:113..5260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score526.9
Seed ortholog evalue5.5e-147
Seed eggNOG ortholog2880.D7FZB3
Preferred namePOLD2
Model size825
KEGG rclassRC02795
KEGG koko:K02321,ko:K02328
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03430,ko03440,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map03430,map03440,map05166
KEGG ModuleM00261,M00262
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000278,GO:0000723,GO:0000731,GO:0003674,GO:0003824,GO:0003887,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006273,GO:0006278,GO:0006279,GO:0006281,GO:0006283,GO:0006284,GO:0006289,GO:0006296,GO:0006297,GO:0006298,GO:0006301,GO:0006401,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016043,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0019439,GO:0019725,GO:0019985,GO:0022402,GO:0022414,GO:0022616,GO:0030894,GO:0031974,GO:0031981,GO:0032200,GO:0032201,GO:0032991,GO:0032993,GO:0033260,GO:0033554,GO:0033567,GO:0033683,GO:0034061,GO:0034641,GO:0034644,GO:0034645,GO:0034654,GO:0034655,GO:0042575,GO:0042592,GO:0042769,GO:0043137,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043596,GO:0043601,GO:0043625,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0046700,GO:0050896,GO:0051276,GO:0051321,GO:0051606,GO:0051716,GO:0060249,GO:0061695,GO:0065007,GO:0065008,GO:0070013,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0071897,GO:0090304,GO:0090305,GO:0104004,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901575,GO:1901576,GO:1902296,GO:1902319,GO:1902494,GO:1902969,GO:1902983,GO:1903046,GO:1903047,GO:1903459,GO:1903460,GO:1904161,GO:1990234
Exons8
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1311@1,KOG2732@2759
Cds size825
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10751.683.1prot_Ecto-sp13_S_contig10751.683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10751 113..5260 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462551.961023-CDS-Ecto-sp13_S_contig10751:112..2231681462551.961023-CDS-Ecto-sp13_S_contig10751:112..223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 113..223 +
1681462551.9738796-CDS-Ecto-sp13_S_contig10751:799..8971681462551.9738796-CDS-Ecto-sp13_S_contig10751:799..897Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 800..897 +
1681462551.9833553-CDS-Ecto-sp13_S_contig10751:1664..17261681462551.9833553-CDS-Ecto-sp13_S_contig10751:1664..1726Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 1665..1726 +
1681462552.0720873-CDS-Ecto-sp13_S_contig10751:2298..24181681462552.0720873-CDS-Ecto-sp13_S_contig10751:2298..2418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 2299..2418 +
1681462552.0859215-CDS-Ecto-sp13_S_contig10751:3447..35361681462552.0859215-CDS-Ecto-sp13_S_contig10751:3447..3536Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 3448..3536 +
1681462552.3837085-CDS-Ecto-sp13_S_contig10751:3929..40441681462552.3837085-CDS-Ecto-sp13_S_contig10751:3929..4044Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 3930..4044 +
1681462552.393741-CDS-Ecto-sp13_S_contig10751:4323..44451681462552.393741-CDS-Ecto-sp13_S_contig10751:4323..4445Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 4324..4445 +
1681462552.4037485-CDS-Ecto-sp13_S_contig10751:5152..52601681462552.4037485-CDS-Ecto-sp13_S_contig10751:5152..5260Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10751 5153..5260 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10751.683.1

>prot_Ecto-sp13_S_contig10751.683.1 ID=prot_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=275bp
GLVIAVKGTVTASGEMLVDDWCPAGIPPPVPSSPSKKVGGRHDPLLVSLL
VDFVAGYLGGVEDQEGTSARIGRVIVCGDSVAAPSADLLSGTGPSKRLNA
EQQRLVASPMKELDTILALLAAAAPVDVMPGESDPANYTLPQQPLHPCLL
RNASRFGALKRVTNPHEAKIGERLFLGSSGQPLLDMARYTTPDAEADKDA
KPVCLRRLEEMLKWRHMAPTAPETLGCYPFVTEDPFVVEECPDIFFAGNQ
PQFATGILEGADGQKVHRVLCEVR*
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mRNA from alignment at Ecto-sp13_S_contig10751:113..5260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10751.683.1 ID=mRNA_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5148bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10751:113..5260+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTGGTGATCGCCGTCAAGGGAACGGTCACGGCGTCCGGGGAAATGTT GGTCGATGACTGGTGCCCTGCCGGGATTCCTCCGCCCGTCCCCTCCTCCC CTTCGAAGAAGGTGAGCTCTGCCTGCTTTTGCTTGACAGGCAGACGGACA AGCAAAGTAGTGCTGCGAACGATACGTAAGATAACCCCCTCCCCCCCCTC CGGCGACAACGTTGTGGGTTTTATTCGAAGTGTCGCCGCCTTTTGGTGTG GGGTGTATGCGGTATCTTCATGTGCGCTCCGCACCCTCCTGACCTACTTG GGTGTTAGGGGACCAACATATGAACGTCTGGCGCTTGTGCTCCTACTTCT GCTTCTTCTACTTCTGCTTGTGCTGCTGCTGCTTCCTCTGCTTTGGCTGC TGCTTCTGCTACTTCGTCTGCTTCTGCCTCTGCTGATTCTTCTGCATCTG CTGCTGCTTCTTCTGCTGCTTTGTGCGGCTGCTTCTTCTTCTGGTTTGGC TCTGGTTCTGCTGCTCGTGGTGGTTCCGCTGCTACTCCCTCTGGTGCTGC CTCTGCTACTGCCTCTGCGTCTGCTGCTGTTGCTGTTGCTGCTGCTGCCT CCGGTTCTGGTGTTGTTTTTTCTGTCCGGGCTTGCCCTGGCGGCCAAGCA GCCGTCTGGGTGCGTGCTGTTGGTATCGGGCCTGCAGGTCGGGGGAAGGC ACGACCCGCTGCTGGTGTCGCTGCTGGTGGACTTTGTCGCGGGGTACCTC GGGGGCGTGGAGGACCAAGAGGGAACCAGTGCAAGGTGCGGGGACCCTAA AAAGCAATGGCAAGAACAAAAGAGGCGTCACTACTACAACAGAACGGGCC AATCAGTGTAATGCGGGGAAACAATAATGGTTTGATATTGGGGAAACCTT GATGCGCATATCGGAAGTTCTTGGAGTTATGGTTGCGCGTAAGATGGGAG CTTTTTTACGTTTTTGGCGATAATGAATCTGGTGTGTGTGGCTTGTGGTG GTGGAATATGCGTGGGGTGGGAAACCACAGCAGTAGGTGGTGTTTGTGTA CCGTACGAGATGACGCCATCGCTGAGTGGCGGTGGTTGTTGTTGTTGTTG TTTGCTGCTTCTGCTATCTGCACATTGGCAGTCGTTCTGACCTTTATCCA GCACCTGTTGATCTCCGAACCTTGATGGGAAAGTCACGAATCCCCACAGA AACAGACTTAACCCCTGATTGATGAAAATACGCTACACATAAAACCCATC CTTCGTTAGAGCAGGCGAGACACATGGCTCGATATGTATTTGTACATTTG AACTCCGGAATTATCGTCGCGTAGCTCGACTGACGACTCGCGTAGATTTG ATTTGACTCTTCAAGTCGGTACGGACGGCGACGTGAGTAGCCCTTTTTTG GGGAGTGCTGGGAGGTGCCCCAGATCATTTCGCCTCGCCTATCTGTAATT TACCATCCGCTCGTCATGCGTTGGTGTGTTGGGGTTCGATCCGCGATCTC CCGCGGCCCCGATTCCTTGTATCTGTCTAACGTATCTATTGTCGCGGCGC AGGATTGGGCGGGTGATCGTGTGCGGCGACAGCGTGGCGGCGCCCTCGGC GGATTTGCTTAGCGGTGAGAGAGGGGGAGAGGGAGAGGGAGAGGGAGAGG GAGAGGGAGAGATATTGGCGAAGATCCGAGACAGAGACAGCGACAGAGAC AGAGACAGAGACGGACACACCAGCTGAAAGTTCTCCGGATTTGCAACACG TGTGCCCCTGCTGCCCTTGATTCGTTTCGACGTCTCACAGAGGGCGAAAA TGGGAGCAAGCCACAGTACGTCGATATCAAGTACGCCATACCATACCAAA CCATACCATGTCTGAAGCGACCCACGCTCGCACGGCACCCCGCGGGCTCG AAACCGTTTCGCCGGGTTATCCTTTCTTGTTCGTGCCGCCAAGAGGACTA CAGAACGTTTTCACTAGAATTTCGATTGTGGCGAGATGCCCTGTTTACAA TAACACACAGAATACGCCAAGGAACTGCGAGGGCTCGGCTGTGCTTTGCT GTCCCCAAGCCACACGCGAGCAAGCGCGGGGTATGCATCGCTCTGCTCCA CCCGCTTGCACTCGTCTCCGCGGGGTTCGCTACCATGCCGCGCATTTTTT ATATCGCCCTTGACAATAAAAACATCGAAACGACAGGAACTGGGCCGTCG AAACGCCTGAACGCGGAGCAACAGCGGCTAGTGGCGTCGCCCATGAAGGA GCTGGACACCATCCTCGCCTTGCTCGCGGCGGCCGCTCCTGTTGACGTCA TGCCTGGTGAGCTATGCCATTCATTCATTCGTTCCTCCGGACTAACTCCC TTAGAATAGGCAGTGTTCTGGGACTGCCCTCGAGATTAACGAGTTCATGA GGGAAGAACAGGGAGGGGTTACGCAGACCCTGTATCCCTTACCTTCACCC TAACCCGACTTCCACGATTTCATGCTTCATCCAACATGTTTACTTGAGAT AATGCTTTTTATTCGACATTAAGGTGCTACTTAATAATTCCAAAAACATT CTCCTATATTTTCAAACCGTGCGAAGGCTAATGGTATTCTGCAGGTCGAC GCGGAATACGGATGAAAATCAGCAGCACAAAGCACCCATGGACGGGTCCG ACTTTCAGCTTGCTTCGCGCGACTGACATCTCTCTCTCTGTCGGCTGACT GAATTATCTTTCCTTTTGAAAAAATTCACAGAGAGACTGTACCTGCTCGA GATATAACCACAGCAGTCGAAGGGGATGTGTTGAAAGCTTTGCAGTGAGT GGAATAAAACCGCCTGATGGTCTTGTGGAACCGGAACAACTTTTTCGGTC TGTGTGGTCCCCTGGATCAGCGGGATAACCAATCCTCGCGTTGCCCTTGA TCTCGATGGCAGCGGCGGCAGCAGCAGCTTTCGCGCAGGTGTCATGTTTC CTTGTGAAATGCTTCTTGCATCTACGACTTGCGAGTTTGTTTGCAAGAGG AGAGAAAACCCCATCCGCTCGTGTTTTTTTTTGTCCAAGAACACGAAGGA GAACAACTTGGTGTACTCTGTACACTTTATTTCTTGCTTTGATCTATATG ATTCGTGATAAAGACTTGTACGAGAAAGCGACGACGTGGGAATACATCGC GTGTGGAGCACCCCCTCCCCCCTCCCCCCCGCTCTCTCTCGCTCTTTGCG GAGAATTTTCCTCCGTGGTATAATATGTCTTCTGCTGAACCCCTGCCTCG AAACGGAGGCGCCGTGTATGGTGTAGAACGGCAAGTTACGAAATCACCCC CCCCCACCCTCCATTATCACGCTTGTTTGGCCCAGGTGAGAGCGATCCCG CCAACTACACCCTGCCGCAGCAGCCTTTGCACCCGTGTTTGCTGAGGAAC GCTAGCCGTTTCGGCGCACTTAAGGTGCGTGCGACAGCAGGTGGTTGGTA GTGATCGGCCGAGATGTGAGTGCGGATACGTTTTTTTTAGCAATGTATGC ATTTCTGGGTTCATGTCATGCATTTATTGGTCCATTTTTGCCCGACGATA TGTAAGGTCGTGAGCGTTTCATGCCGCGTAGAAAACCACTACTGCAGGGC AAAGTGTGCGTTAGCGCAGTTACCCCTCTACCCTGACCAGATCTGGGTTG TCCTTTTGAAACGTAGCCTGGGCCGGCGAAGCCCAGCAAATCGCTCCTCC GCCCGGTATGGTTGGGATGCGTCCCGTTCCGGTAAGGATGCGAGGACTAC GGTCTGCCGACTACGGCATGCGTTTACACGAGTACACCTCCCACCCCCCC CCCCTTCACGGCGACAGAGAGTAACGAATCCGCACGAGGCCAAGATCGGG GAGAGGTTATTCCTGGGCAGCTCCGGCCAGCCGCTCCTCGACATGGCGAG ATACACCACGCCAGACGCTGAGGCCGACAAAGGTATCTGCATAGGCTGGG ATGAAATGATTGCATGTGTCATGGAGTGGCGACTCGTATTGATTTCATTG GTATTGCTAAGTGGTAGCTTTTGGTGTCATCTAGCGTTGTTGCTGTATTG TGGTTTGGCCCGGGTGCGATGTAGGGAACACCTGCATACGGATGGTAGTT CTCCCACGCGCCCCGTCCCGTCTGATCGCCCCCCCCCTCCCCTCCCTGTC CGGATTTTCCATGCGTCTCCCCCCCACCCTGTCTTGTGCGCTTGTCTCTC TCGCGGCGTAGACGCGAAGCCCGTGTGCCTCCGACGTTTGGAGGAGATGC TCAAGTGGAGGCACATGGCGCCGACAGCGCCGGAGACGCTGGGCTGCTAC CCATTCGTAACGGAGGACCCCTTTGTCGTCGAGGTGGGCTGTTTGTTGCC GTACTCTCTGCTGCGTTTTTTTCTTGTTCTTTGTTTCCAAACAAAATTTG GCGAATCTGTCTCTACCCACTGTTATAGGATTCAGATGTGTAGATGGAAC ATAGAAGAGAATGGTTCCTTCTAGAAGGCGCGGAGAGATGTAACTCCCCG CGGAAGGATAAAACAGGGGACAGGATCTAGTAGCCCCTGCTTGTACTGAG GATCCTGCGCCCCTTGGTGTCATTCCTACCGATACCCAAGGCAACAACTA CTGCTGCTGCTGTTCTGCAAGAGTAATAACAAGTGAGTTCTTCTTCACGG GTCAACCAGACTTCATCACGCGTGCATACCACCACACCACGGATTGGAGT CCGTGACAAATATGGCAATGTATTACTTCATGGTTAGTTTTCGTGTTTTC GCCGCGCTTGTAGTGTTCAACTGCAGCAGTACTTGTCTTCTTTCTCCCTC CTTGTGAGTCATGGTTGTGGCGGCCGTTGTCATGAGTAACAGCGTTCACT CCTCATCCTCTGCTTCTACCTCCCCATATTCTTGCGTTTCTAGTTGCACC GCCCCCCTCGACTTGTTTCCGCTGTGTCAGTTTTTTTTTATCTGGTTCAG AGATTGACTGATAACCCCGCCCCCCGTCCGTCTCTCAACGCCGTCTCTTT CTCCTCGGTGGAAATCCCGTGTTCGTGTCTCGTCCGAAAGGAATGCCCGG ATATTTTTTTCGCGGGAAACCAGCCGCAGTTTGCTACCGGCATACTGGAG GGGGCCGATGGACAGAAGGTGCACAGGGTTTTGTGTGAAGTTCGATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10751:113..5260+

>mRNA_Ecto-sp13_S_contig10751.683.1 ID=mRNA_Ecto-sp13_S_contig10751.683.1|Name=mRNA_Ecto-sp13_S_contig10751.683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=825bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10751:113..5260+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTGGTGATCGCCGTCAAGGGAACGGTCACGGCGTCCGGGGAAATGTT
GGTCGATGACTGGTGCCCTGCCGGGATTCCTCCGCCCGTCCCCTCCTCCC
CTTCGAAGAAGGTCGGGGGAAGGCACGACCCGCTGCTGGTGTCGCTGCTG
GTGGACTTTGTCGCGGGGTACCTCGGGGGCGTGGAGGACCAAGAGGGAAC
CAGTGCAAGGATTGGGCGGGTGATCGTGTGCGGCGACAGCGTGGCGGCGC
CCTCGGCGGATTTGCTTAGCGGAACTGGGCCGTCGAAACGCCTGAACGCG
GAGCAACAGCGGCTAGTGGCGTCGCCCATGAAGGAGCTGGACACCATCCT
CGCCTTGCTCGCGGCGGCCGCTCCTGTTGACGTCATGCCTGGTGAGAGCG
ATCCCGCCAACTACACCCTGCCGCAGCAGCCTTTGCACCCGTGTTTGCTG
AGGAACGCTAGCCGTTTCGGCGCACTTAAGAGAGTAACGAATCCGCACGA
GGCCAAGATCGGGGAGAGGTTATTCCTGGGCAGCTCCGGCCAGCCGCTCC
TCGACATGGCGAGATACACCACGCCAGACGCTGAGGCCGACAAAGACGCG
AAGCCCGTGTGCCTCCGACGTTTGGAGGAGATGCTCAAGTGGAGGCACAT
GGCGCCGACAGCGCCGGAGACGCTGGGCTGCTACCCATTCGTAACGGAGG
ACCCCTTTGTCGTCGAGGAATGCCCGGATATTTTTTTCGCGGGAAACCAG
CCGCAGTTTGCTACCGGCATACTGGAGGGGGCCGATGGACAGAAGGTGCA
CAGGGTTTTGTGTGAAGTTCGATGA
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