mRNA_Ecto-sp13_S_contig10732.672.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10732.672.1
Unique NamemRNA_Ecto-sp13_S_contig10732.672.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: A0A6H5KG59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG59_9PHAE)

HSP 1 Score: 237 bits (604), Expect = 1.260e-76
Identity = 131/148 (88.51%), Postives = 138/148 (93.24%), Query Frame = 1 
Query:   58 TTQPTDIGNGNMADTTVLQRQQQQPHRETAKPVSKKSTVTGAAAAXXXXXXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLR 501
            TTQP  IG+GNMADTT+L+R QQQPHRETAKPVSKKST+TGAA A     XXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGR AVINY+TGDKS+MWSQKVVDIRHSW+TLR
Sbjct:    2 TTQPIKIGHGNMADTTILRRNQQQPHRETAKPVSKKSTITGAAGATAARLXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRDAVINYYTGDKSIMWSQKVVDIRHSWITLR 149
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 2.320e-70
Identity = 137/157 (87.26%), Postives = 147/157 (93.63%), Query Frame = 1 
Query:   31 SDELLLAETTTQPTDIGNGNMADTTVLQRQQQQPHRETAKPVSKKSTVTGAAAAXXXXXXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLR 501
            S ++LLAETTTQPT+IG+GNMA T  L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXX AATYEVSPDGDPMTL AALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLR
Sbjct:    8 SGKVLLAETTTQPTNIGHGNMAVTANLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLAAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLR 164
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: D7FHJ7_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ7_ECTSI)

HSP 1 Score: 208 bits (529), Expect = 3.110e-66
Identity = 123/140 (87.86%), Postives = 129/140 (92.14%), Query Frame = 1 
Query:   91 MADTTVLQRQQQQPHRETAKPVSKKSTVTGAAAAXXXXXXXXXXXXXXXSAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLRVRG 510
            MA T  L+RQQQQP++ETAKPVSK STVTGAAAA XXXXXXXXXXXXXX AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTM AGVEGNPLVIEGGR AV+NY+TGDKS+MWSQKVVDIRHSWVTLR   
Sbjct:    1 MAVTPNLRRQQQQPYQETAKPVSKNSTVTGAAAATXXXXXXXXXXXXXXXAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMKAGVEGNPLVIEGGRDAVVNYYTGDKSIMWSQKVVDIRHSWVTLRANA 140
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: D8LJ28_ECTSI (EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ28_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 3.840e-46
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:  238 SAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTL 498
            +AA YEVSPDG PMTLTAALEVAGAGD ISL DGIYREP+VTMNAGVEGNPLVI GGRGA+INYF+GD+S+MWSQKVVDIRHS+VTL
Sbjct:   32 NAAMYEVSPDGSPMTLTAALEVAGAGDIISLADGIYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 118
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: A0A6H5K1D2_9PHAE (Beta_helix domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 2.710e-41
Identity = 73/87 (83.91%), Postives = 82/87 (94.25%), Query Frame = 1 
Query:  238 SAATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTL 498
            +AA YEVSPDG+PMTLTAALEVAGAGD +SL DG YREP+VTMNAGVEGNPLVI GGRGA+INYF+GD+S+MWSQKVVDIRHS+VTL
Sbjct:   31 NAAMYEVSPDGNPMTLTAALEVAGAGDIVSLADGTYREPIVTMNAGVEGNPLVITGGRGAIINYFSGDRSLMWSQKVVDIRHSYVTL 117
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: A0A6H5KT05_9PHAE (Beta_helix domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KT05_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.770e-17
Identity = 44/86 (51.16%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:  241 AATYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTL 498
            A T++ SPDG P ++ +AL  AGAGDT+ L DG Y E +VT+  G  GNPL+I GGR A++N   GD       KVV ++HSWVTL
Sbjct:   13 ARTFDASPDGVPYSIASALAEAGAGDTVVLADGTYNEAIVTVQGGESGNPLIITGGRDALVN--AGDDG-----KVVYVQHSWVTL 91
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BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Match: D7FZD2_ECTSI (FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZD2_ECTSI)

HSP 1 Score: 66.6 bits (161), Expect = 1.100e-9
Identity = 34/85 (40.00%), Postives = 52/85 (61.18%), Query Frame = 1 
Query:  247 TYEVSPDGDPMTLTAALEVAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSMMWSQKVVDIRHSWVTLR 501
            TY+V+ DGD   L  A+++A AGDT+SL DG Y + L T+  G  GNP+ + GG GA+I      K+   + + V + HS++ L+
Sbjct:    2 TYDVTVDGDGFGLAEAMDLAEAGDTVSLQDGTYEQALETVRDGESGNPITVVGGPGAII------KAQNSASRSVFVGHSFIELK 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10732.672.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KG59_9PHAE1.260e-7688.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ42_ECTSI2.320e-7087.26FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FHJ7_ECTSI3.110e-6687.86EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LJ28_ECTSI3.840e-4686.21EsV-1-164 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K1D2_9PHAE2.710e-4183.91Beta_helix domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KT05_9PHAE7.770e-1751.16Beta_helix domain-containing protein n=2 Tax=Ectoc... [more]
D7FZD2_ECTSI1.100e-940.00FirrV-1-B30 n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10732contigEcto-sp13_S_contig10732:1679..5691 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionEsV-1-164
Ec32 orthologEc-00_000340.1
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462550.6976097-CDS-Ecto-sp13_S_contig10732:1678..17121681462550.6976097-CDS-Ecto-sp13_S_contig10732:1678..1712Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10732 1679..1712 +
1681462550.707128-CDS-Ecto-sp13_S_contig10732:5203..56911681462550.707128-CDS-Ecto-sp13_S_contig10732:5203..5691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10732 5204..5691 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10732.672.1prot_Ecto-sp13_S_contig10732.672.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10732 1679..5691 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10732.672.1

>prot_Ecto-sp13_S_contig10732.672.1 ID=prot_Ecto-sp13_S_contig10732.672.1|Name=mRNA_Ecto-sp13_S_contig10732.672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=174bp
PHSRQQSTSPSDELLLAETTTQPTDIGNGNMADTTVLQRQQQQPHRETAK
PVSKKSTVTGAAAATAARLATAALALTAASAATYEVSPDGDPMTLTAALE
VAGAGDTISLGDGIYREPLVTMNAGVEGNPLVIEGGRGAVINYFTGDKSM
MWSQKVVDIRHSWVTLRVRGKDL*
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mRNA from alignment at Ecto-sp13_S_contig10732:1679..5691+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10732.672.1 ID=mRNA_Ecto-sp13_S_contig10732.672.1|Name=mRNA_Ecto-sp13_S_contig10732.672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4013bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10732:1679..5691+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATTCGAGACAGCAGAGCACATCACCATCAGGTGAGAGAGTCCACAG
AGAGAGACAGAGAGTGCCCACATTCGACATCTATCTGTATCTGTTTTCTA
CCTTGCGGCGTCCTACACAAACTTCAGCACAAACAATGTCATCACACGGA
TTTGGACATATAGTGCATAGATTGGTGCATTGTGTATCGCACGGTGCATC
ATAAGGTGCATACTCTTTGCACGTGTGTGTGCGTCGCTCGATTTCTACCG
TACAAAAGTCAAAAATCGCTGCGCGTGCGCATCATCATCCCTCCTCAGCG
AATCCTCCTGCTCGTTTTCGAAAGTCGGTGCATGTTGCAAGGCGTGTGAT
CGCCTGTCACGCACGCCTATACGAACGTGTGCTTACTACACGGACAACGA
CCTTGAGCGCATGCATGCAGGCTAGGATCTGATGCACGAGGGAGAGAGAC
AAGAGCGACCGGTCGATCTCCGCTTATGCATAGAACATCATCTTTCTTTC
CCTGTTATCCACCTATCAACGCAAATATATTCATAAAACGGCTGGCTGTG
TTATGTAAATATACGCGGTCCTACTGCATGCATATTAGGCACGAGGAACG
AATCTTCCATTCCATGCATGTATGTGATGAGTGGACAGTGCGAAAGTGGC
AAAAACGTTGGAAATTAGGGTTAGGGCTAGAGTTTTGTGTGGGTGTATGG
TCATCCCAGAGAATGTGCAAGGCAGAACGGCACGCGGTCGTGACAGGTAG
GTTGGTTTTGTATGCCATAATGGGGTACGTACGTATACGTTTTCGGCAAG
TAATTAATACATTCCGTCGCACATAAAATAAAAGATGGTGATGATTGTTT
CAGTAAAAATGAAAAAGGGCTACGCCGGACGGGGATTACTTTGTAACTCC
GACGACGACGTCTGTCCAGACGTAGGGGGGGCTGCATACAAAGACGAAGT
TGCACCGCGACCCACGCGGCAGGCAGCGATTCCCAGGATACACAGCGACG
CACAGCCACGCCGCGGCAGCGATTCCCTGGATGAGGTGGGACATTTTATC
TTTTATCAGCACGCAGAAGAAGAGAAGAAACGGTTGATCTGTGGGCACAC
ACATATACAACGAGATGCGGTGTTTGTTGTGTGTAGAGCGAGCGGTGGTT
CGCGTCTCTCTCTCTGGATTTCATCAAAAAAGAACAGAAGAAACGCACGA
AGTTTTTCGAAAAAAAATGATGCATGCGTAGTAGTACTCTTCTCTAGAAA
GCAGATGAGACGCCACAACAGCAGTAGCAGCAGTCAGTCCAGACGACGAG
CGCCTCTCGGTTGGAGTCCAGCAAAATATTGTGATCCCATGCACAAAGGA
CTTTTGCTGCGACAGGTACGTATGCGTAGTAAGAAAAATAACACAAACAG
ACCATCCACACGCATGTATGTACTACTGCTGTGTATCATTTGTATGTGCC
CGTTCGAAATATATATATCCACGGGTCGAACGCGCCTGTCTGTCTGTGGA
AAGGCTGAAGAAAGAGGGATGGATGTACTATTTCATAAACCTTGGACCGG
CCAACGGGAAGAGGTCGGCAGCAAGTTGTCATCATCATCAGGCGACCGAT
TCACACATACATAAATAAATATACATTACATGGGATTGAGATCCAACAAT
CAATGTCGTGAAAATCTTGGCACTTTCCGTCTGCAATAATAACTGAGTAT
CTCAACGGGTACCCCACTTACTTGATGAAGACGACAGCAGAGACAGCTAG
TACAATGCCGTTTCGTCGCAGAATGACATAGTGGGGTGAAGACAAAAGTA
CGCGTTTTTATTGACGTTGTGCGGCGGAAGAAAAAATCGGCCACACGTGC
GTATACATACATGCGTGTGCTTCACAGCACATCCACCCACTGCATGCAGA
ACTGCAGAATGAGTAGCGGTCCGCATGTTCATAATCTTCATCCGCTACTA
CTGTCAAATTTCCATGATACCTGATGTAGTATGTCAGATCACCCTTTATG
CATACATCGCTTATTCTTCCAACACCGGGGAAGGTTGTTTCAGCGTTTAG
ACATGCATACATCTCGCTCCTCTGTGCAAGCTTTGGCACTACGCGGACGC
CAATGGTGCCGAGTGTCGAATAGACATATCGGGGTAGCTGCAGTGCCCAA
CGGGATATTATTTATATCGATTATATACTTCTCTATCTTTAACTATACCC
AACAACTTCACGGAGCTCGCCCGCCGGTGGCACACACTGTCTTCCTCCTT
GCCAAATCTCACGAAGGGAGGCCGCTTTTGCTCCTCGGGTAGTAGTTGGT
GTGGTGGGTGATCACGATGACACAGTACGGTGAATACAACAACGACCGGG
GTCTCCTTCAAATGATGATCGTATATGTAGTATATTCTGTGACGTCAGCC
CGCACTTTGTATTTCTCGGAAGATTTCATCAAAAGAGAGGAGGACAAAAA
ATCTCGAACGGATGGATGGATACTATTTCCGTGGGATTGAGAAGTTTACT
TTGAAGAATAATCAAGACGCTTTGCTGCTGCTGCTTGTAGACTGTACGTC
TGAAATAGTAGGTTCAAGCTGTGCTGCTCGGAGAACATTGTTTTAGCAAT
TTATTGGCAGCAAAGCCGTAAACAAGAAACAAATACCAGGAGGACAAAAC
TTTGCTTGATACAGTATTTCTGAAAATCCAGAAACATCCATGTTCATCAT
CACTTGTTTTATTGATGTTACATGTTATTGGTATTACATACATATACACA
TGAATATACATTCATACAAAGAATTTCACAATACAGAAAACAACTCTTTT
CTTTGGATAGGTTAGATATACTCATTATGGCGATCTAGATATTAATATGT
AGACTTACTACGTATTAAGGAACCGTTCAGTTCTCTTGCTTCTAGGTATG
GTATGCCTTGTTTCCGAACGCTGAGGGAGTGGCCACAACCTATCCTCGCG
CCAATCAATCCGAACGGGTCCACTTCCCTTCTGCACCTCAGTCTAAACGC
CTACATGTAACCTTTGTAGGACTCTGCGGCAATGGTTTTGAATTTCATTC
TTGTACGGAAAAATACAGACCCGAGACTGTCACGGACATCATGTCACGAG
TTTTCAGCCCACGTGTTCACCTACTAATTCCATCACTGGATTACGGTGCA
CTATAAAACGAGGGTAGAAAGATACCACGGTCCCCAGTAGATGTGTCGCA
TACTACCACGTCGCGAGCGAGAGAAACGAGGCGTTGCTCTTGCCGTCCTA
GGCCACTTACTTACGGTGCCCATGGGCGGTGAATACAATCGTCGACACCG
GAAATCCCACGCAAAGCTCTTTGACAAAAACGTCATTGGAGTACCTGGCC
CACTTTGTGCCTCCGTGAGTACCCGGTATCCGGCTAGCGGAAAGGTTTGC
TGGTGATGACAATGCGGGAGGAAACACTGCCTATGTCCCACGTTGAGAGG
ACAAGCCATGCGACCCCCCGACCATTGCCAACTTCATCACCCGCCCTTCC
TTGCCCCCACACCCAAAACTGAAAGACGAGCTCCTACTCGCCGAGACGAC
GACGCAACCAACCGATATCGGCAACGGCAACATGGCGGATACGACTGTCC
TTCAACGTCAGCAACAGCAGCCACACCGGGAGACTGCGAAACCGGTCAGC
AAGAAGTCCACCGTCACGGGTGCCGCCGCCGCCACTGCCGCGCGCCTTGC
CACGGCAGCCCTCGCCCTCACCGCTGCTAGCGCGGCCACCTACGAGGTGT
CCCCTGATGGCGATCCCATGACGCTCACCGCTGCGCTAGAGGTGGCCGGT
GCAGGCGACACCATATCGTTGGGGGACGGGATCTACCGCGAGCCGCTCGT
GACGATGAACGCCGGTGTGGAGGGCAATCCCCTCGTGATCGAGGGTGGCA
GAGGCGCGGTCATCAATTACTTCACCGGCGATAAGAGTATGATGTGGTCC
CAGAAGGTCGTCGACATTCGCCACTCGTGGGTCACTCTGCGGGTGAGAGG
CAAAGATTTATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10732:1679..5691+

>mRNA_Ecto-sp13_S_contig10732.672.1 ID=mRNA_Ecto-sp13_S_contig10732.672.1|Name=mRNA_Ecto-sp13_S_contig10732.672.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=522bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10732:1679..5691+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATTCGAGACAGCAGAGCACATCACCATCAGACGAGCTCCTACTCGC
CGAGACGACGACGCAACCAACCGATATCGGCAACGGCAACATGGCGGATA
CGACTGTCCTTCAACGTCAGCAACAGCAGCCACACCGGGAGACTGCGAAA
CCGGTCAGCAAGAAGTCCACCGTCACGGGTGCCGCCGCCGCCACTGCCGC
GCGCCTTGCCACGGCAGCCCTCGCCCTCACCGCTGCTAGCGCGGCCACCT
ACGAGGTGTCCCCTGATGGCGATCCCATGACGCTCACCGCTGCGCTAGAG
GTGGCCGGTGCAGGCGACACCATATCGTTGGGGGACGGGATCTACCGCGA
GCCGCTCGTGACGATGAACGCCGGTGTGGAGGGCAATCCCCTCGTGATCG
AGGGTGGCAGAGGCGCGGTCATCAATTACTTCACCGGCGATAAGAGTATG
ATGTGGTCCCAGAAGGTCGTCGACATTCGCCACTCGTGGGTCACTCTGCG
GGTGAGAGGCAAAGATTTATAG
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