mRNA_Ecto-sp13_S_contig10717.659.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10717.659.1
Unique NamemRNA_Ecto-sp13_S_contig10717.659.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10717.659.1 vs. uniprot
Match: D7FJV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV3_ECTSI)

HSP 1 Score: 426 bits (1094), Expect = 4.010e-148
Identity = 237/282 (84.04%), Postives = 246/282 (87.23%), Query Frame = 1 
Query:    1 AAMSGQTAVVAELLAAGANPHARCSSGETPLDLAGRWLDHNANLPAAPCQSPDSSGVVFEHFPAPIVGGXXXXXXCGSGDPSLVYHGASADHPPWNEQAIAAIYNKNNTPAGPVHSPGWPSPRGVGGGFMQVPSPATPTNFHASSAATAAXXXXXXXXXXXXXXAPPLRSHAKEDAAGVAWLGVAQTTAGGTTVEGQAGGEAIAXXXXXXXANSAFYGQEHSPSPAAKGRLWAERIEAGRNQPLCRVECASYCAMKTPGGSQTAVGIGCCKKYIVDTQFLVI 846
            AAMSGQT+V+AELLAAGANPHARCSSGETPLDLAGRWLDHNANLPAAP QS  SS +VFE  PAPIVGGXXXXXX   GDPSLVY GA  DHP WNEQAIAAIY+KNNTPAGPVHSPGWPSPRG GGGFMQVPSPATPTN HA       XXXXXXXXXXXXXXAPPLRSH KEDAAGVAWLGVAQTTAGGTTVEGQAGGEA+A       ANSAFYGQE+SPSPA KGRLWAERIEAGRNQPLCRVE ASYCAMKTP G QTAV +GC KKY+VDTQFLV+
Sbjct:   21 AAMSGQTSVIAELLAAGANPHARCSSGETPLDLAGRWLDHNANLPAAPGQSSGSSEIVFEDSPAPIVGGXXXXXXXXXGDPSLVYQGAPTDHPAWNEQAIAAIYHKNNTPAGPVHSPGWPSPRGAGGGFMQVPSPATPTNVHAXXXXXXXXXXXXXXXXXXXXXAPPLRSHVKEDAAGVAWLGVAQTTAGGTTVEGQAGGEAVAGGAATAVANSAFYGQENSPSPATKGRLWAERIEAGRNQPLCRVEYASYCAMKTPRGPQTAVYVGCRKKYMVDTQFLVV 302
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BLAST of mRNA_Ecto-sp13_S_contig10717.659.1 vs. uniprot
Match: A0A6H5KV60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV60_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.300e-5
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  634 ANSAFYGQEHSPSPAAKGRLWAERIEAGR 720
            ANSAF+GQEHS SPA KGRLWAERIEA R
Sbjct:   14 ANSAFFGQEHSSSPATKGRLWAERIEAAR 42
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10717.659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJV3_ECTSI4.010e-14884.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KV60_9PHAE2.300e-586.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10717contigEcto-sp13_S_contig10717:2546..5282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size849
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-10_000590.1
Cds size843
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.2751086-CDS-Ecto-sp13_S_contig10717:2545..27811681462549.2751086-CDS-Ecto-sp13_S_contig10717:2545..2781Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10717 2546..2781 -
1681462549.2840207-CDS-Ecto-sp13_S_contig10717:3311..38171681462549.2840207-CDS-Ecto-sp13_S_contig10717:3311..3817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10717 3312..3817 -
1681462549.2920756-CDS-Ecto-sp13_S_contig10717:5175..52761681462549.2920756-CDS-Ecto-sp13_S_contig10717:5175..5276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10717 5176..5276 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462549.300012-UTR-Ecto-sp13_S_contig10717:5276..52821681462549.300012-UTR-Ecto-sp13_S_contig10717:5276..5282Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10717 5277..5282 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10717.659.1prot_Ecto-sp13_S_contig10717.659.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10717 2546..5276 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10717.659.1

>prot_Ecto-sp13_S_contig10717.659.1 ID=prot_Ecto-sp13_S_contig10717.659.1|Name=mRNA_Ecto-sp13_S_contig10717.659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=281bp
MSGQTAVVAELLAAGANPHARCSSGETPLDLAGRWLDHNANLPAAPCQSP
DSSGVVFEHFPAPIVGGGGGGGGCGSGDPSLVYHGASADHPPWNEQAIAA
IYNKNNTPAGPVHSPGWPSPRGVGGGFMQVPSPATPTNFHASSAATAAVV
AFTSPPPAPTPPAPPLRSHAKEDAAGVAWLGVAQTTAGGTTVEGQAGGEA
IAGGAAAAAANSAFYGQEHSPSPAAKGRLWAERIEAGRNQPLCRVECASY
CAMKTPGGSQTAVGIGCCKKYIVDTQFLVI*
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mRNA from alignment at Ecto-sp13_S_contig10717:2546..5282-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10717.659.1 ID=mRNA_Ecto-sp13_S_contig10717.659.1|Name=mRNA_Ecto-sp13_S_contig10717.659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2737bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10717:2546..5282- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCATGTCCGGACAGACTGCGGTCGTTGCCGAGCTTCTAGCAGCTGG
AGCCAACCCTCATGCTCGATGTTCCTCAGGAGAAACGCCGCTTGATCTAG
CTGGAAGGTGACGAGACGACGAGGTCTATTTAAACGAAGGAAGAAAATGC
CTGCGACGCCTGTACGTTTGAACCTGTCTGATATTACCGCAAAGGGAGCT
AGCTCCCTCTGCACAAGAGCACACGAGTATCCGCCGCCTTCTCAACCTAG
ATAATCCCGTCAAACGAGGTCGGACAGCATTAATTGATGTTACCTGTGCT
GCCCCCGCGTATCAACAGACCGTATGGCAATTCGACTCAAGCTTTCCTTC
ATCCTTCGAATTTCTTTTCCTAATGACTTTGAGCAAACATGATTTCATCC
CCTCCTTCTGGCAGGAATGGACACAACGACGCCCTTTCTTGTCTCCTCTG
TCATCCTCCACTTTCGGCCCCTCCACCGGCTAACAATGTCCACCGAGGAC
AAGAAACAATGACGAACACACCGATGCCGACGGTCGCGCAAGGGCCAGGG
GCGGCCACAGCTGCTGCTGCTAGTGCGGCAGGTGCTAGTGGAGGTAGTGC
TGCTGTTGCTGCAAAATCGCCTGAAAAACAGGGTGGGTCGATCTTCCGAC
GAAAGCCCTGGGGCCGAAAAGGTACGAAGGGAGCAGGAATTCCAAGCCCG
AAGGAGAAAGGTGGTACTTCGTCCCTTGCGAAGTCCAAAAGGGGAAGAGG
AAAACGCCCAGGATTCACACGCGGCAGCGCCACCGACCGCGGCAGCAGCG
AGACCCCCGATGGAGGCATTGACGTCGGAAACGGATGGATCATGTACACG
ACCGCGGAAGGGTTCCCGTACTGCTGGAACGAAACTCTTCAGGAGTCGAG
GTCAGGAAGGTGTTTCAGCCCCCTGAGAAGGACGAGAGTTACTAAACGTG
GAATGATGTGCCTTGCACCAGTAGCAAGACCAAAATCACGCCCCCTTGCC
TTGTACAAAGCTAACGGCTCGACTACTGCTGTTTTTCTTCTGCAGTGGAT
GTTCTCCAGTCTTATGTCTTAGACCGGATCAGGTGTGGCCATGGACTGCT
CGACTCTCCGGCAGTGCGTAACACTACGTCATTCGCAGGGAAGCACAGGA
GCGAAACAACTCCTTGCCGCTTGAAGAGCAACAACCCTCGCCGAGCAGTG
TGACGCATTGTATTCTCGTTGTACAACTACTCTGCCACAAAATGTTTGGA
AGAAATTGCTCAACAATACCGTACGCCAAGCGGAGATAAGCCAAACAGAC
ATGATCCGCTCTGCCCGTCCCCCAGCCCGGTGCTAGCTACTTTCGCCATG
AGGTGCAGCACCAGAATAGTTGCAGGAGCGTCACAGAACGCCTCACCTTG
TACCCCCCTTCACGCGTGGCGGCGGGCATTCATGGCGCCTAAACTCTTCC
CACATGATTTTCTAGGTGGCTGGACCACAACGCCAACCTTCCAGCGGCAC
CCTGTCAGTCTCCCGACTCTTCGGGAGTCGTCTTCGAGCATTTTCCGGCC
CCCATCGTTGGCGGCGGAGGCGGCGGGGGTGGCTGTGGTAGCGGCGACCC
CTCCCTCGTCTACCACGGCGCCTCCGCAGACCACCCGCCGTGGAACGAAC
AAGCGATCGCCGCTATTTACAACAAAAACAACACCCCCGCCGGTCCCGTT
CACAGTCCAGGATGGCCTTCACCTCGAGGAGTCGGAGGCGGGTTCATGCA
GGTGCCGTCGCCCGCTACACCAACCAACTTTCATGCTTCTTCTGCTGCTA
CTGCCGCCGTCGTAGCCTTTACGTCGCCACCCCCGGCCCCGACGCCCCCG
GCGCCACCACTTCGAAGTCATGCCAAGGAAGATGCTGCCGGGGTGGCTTG
GTTGGGGGTGGCTCAGACGACGGCAGGGGGAACTACAGTGGAGGGACAAG
CTGGTGGTGAGGCCATCGCAGGTTACAGCTCCAGATATTGCGCAAACTTA
GGAAGGGTATCCGCCAGAACAGTCGAGCATCGTTCGCGCGCCGAATCACA
TCAAATGCGCGCAGCCTTTTCTCCGGACACCTCATTTGGCAGGCACGATG
AGATCTAAGACGGGTTTAATGGCACGAGTGGTTATATTTTGTGTTTGTCG
TTCATTCAGTGTGTTTACCAATGACAGATGAGTACCTCCGCCACTTCAGT
CTCTCGTTCTTACGTGAATGTTTTAACCTTTCCTCTGGCGTTCGTGGGAA
TCAGGCAAAGCTGCACATGCATCCAAGTTGTGTTTTTTCCGTGTCACTTC
GTCTCCTTCGCGTTCTGTATGACAGGGCACCGATAGAACTGTTCACCACA
GGCTCCCTACCCACCTGCCGTCATTACCTACCGACCCCAACCGCCCTAAG
TTGGAGCTTATTTTTCTCGTGTGGTGTAGACAAACGTGAAGTTCTCGGGA
GATCGGGGGTGCCATCATGCTGTCTGTCCCCGCCCCTACCATGCTTCGTA
GGTGGCGCCGCGGCAGCCGCAGCAAACTCGGCCTTCTACGGCCAGGAGCA
CTCGCCGAGCCCCGCAGCCAAGGGGAGGCTGTGGGCTGAGAGGATCGAAG
CAGGTAGAAATCAACCGCTTTGCCGAGTGGAATGTGCCTCGTACTGTGCG
ATGAAAACACCTGGGGGATCACAGACAGCAGTTGGTATCGGATGTTGCAA
GAAATATATTGTCGACACCCAATTCCTCGTCATATGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10717:2546..5282-

>mRNA_Ecto-sp13_S_contig10717.659.1 ID=mRNA_Ecto-sp13_S_contig10717.659.1|Name=mRNA_Ecto-sp13_S_contig10717.659.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=843bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10717:2546..5282- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGACAGACTGCGGTCGTTGCCGAGCTTCTAGCAGCTGGAGCCAA
CCCTCATGCTCGATGTTCCTCAGGAGAAACGCCGCTTGATCTAGCTGGAA
GGTGGCTGGACCACAACGCCAACCTTCCAGCGGCACCCTGTCAGTCTCCC
GACTCTTCGGGAGTCGTCTTCGAGCATTTTCCGGCCCCCATCGTTGGCGG
CGGAGGCGGCGGGGGTGGCTGTGGTAGCGGCGACCCCTCCCTCGTCTACC
ACGGCGCCTCCGCAGACCACCCGCCGTGGAACGAACAAGCGATCGCCGCT
ATTTACAACAAAAACAACACCCCCGCCGGTCCCGTTCACAGTCCAGGATG
GCCTTCACCTCGAGGAGTCGGAGGCGGGTTCATGCAGGTGCCGTCGCCCG
CTACACCAACCAACTTTCATGCTTCTTCTGCTGCTACTGCCGCCGTCGTA
GCCTTTACGTCGCCACCCCCGGCCCCGACGCCCCCGGCGCCACCACTTCG
AAGTCATGCCAAGGAAGATGCTGCCGGGGTGGCTTGGTTGGGGGTGGCTC
AGACGACGGCAGGGGGAACTACAGTGGAGGGACAAGCTGGTGGTGAGGCC
ATCGCAGGTGGCGCCGCGGCAGCCGCAGCAAACTCGGCCTTCTACGGCCA
GGAGCACTCGCCGAGCCCCGCAGCCAAGGGGAGGCTGTGGGCTGAGAGGA
TCGAAGCAGGTAGAAATCAACCGCTTTGCCGAGTGGAATGTGCCTCGTAC
TGTGCGATGAAAACACCTGGGGGATCACAGACAGCAGTTGGTATCGGATG
TTGCAAGAAATATATTGTCGACACCCAATTCCTCGTCATATGA
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