mRNA_Ecto-sp13_S_contig10710.650.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10710.650.1
Unique NamemRNA_Ecto-sp13_S_contig10710.650.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10710.650.1 vs. uniprot
Match: D7G7K3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K3_ECTSI)

HSP 1 Score: 238 bits (607), Expect = 8.520e-78
Identity = 118/127 (92.91%), Postives = 122/127 (96.06%), Query Frame = 1 
Query:    1 LAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLCAPSKFVYVSCAVLYGVTGLLDMILVAAWFNCEYIDANAGILTLLAMPNIIASFSCFLGCAWSLKVFHICDRDSDQRVPEASDLFLA 381
            LAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVL APSKFVYVSCA+LYGVTGLLDMILVAAWFN EYIDANAGILTLLAMPNIIASFSCFLGCAW+LKVFH  DRDSD R+PEASDLFL+
Sbjct:   56 LAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLWAPSKFVYVSCAILYGVTGLLDMILVAAWFNYEYIDANAGILTLLAMPNIIASFSCFLGCAWALKVFHNRDRDSDPRLPEASDLFLS 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10710.650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7K3_ECTSI8.520e-7892.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10710contigEcto-sp13_S_contig10710:1..2107 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size452
Hectar predicted targeting categorysignal peptide
Exons4
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.7033484-CDS-Ecto-sp13_S_contig10710:0..461681462548.7033484-CDS-Ecto-sp13_S_contig10710:0..46Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 1..46 +
1681462548.7144713-CDS-Ecto-sp13_S_contig10710:868..10281681462548.7144713-CDS-Ecto-sp13_S_contig10710:868..1028Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 869..1028 +
1681462548.7247245-CDS-Ecto-sp13_S_contig10710:1304..14821681462548.7247245-CDS-Ecto-sp13_S_contig10710:1304..1482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10710 1305..1482 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462548.7326703-UTR-Ecto-sp13_S_contig10710:1482..14921681462548.7326703-UTR-Ecto-sp13_S_contig10710:1482..1492Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10710 1483..1492 +
1681462548.7412505-UTR-Ecto-sp13_S_contig10710:2049..21071681462548.7412505-UTR-Ecto-sp13_S_contig10710:2049..2107Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10710 2050..2107 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10710.650.1prot_Ecto-sp13_S_contig10710.650.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10710 1..1482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10710.650.1

>prot_Ecto-sp13_S_contig10710.650.1 ID=prot_Ecto-sp13_S_contig10710.650.1|Name=mRNA_Ecto-sp13_S_contig10710.650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
LAIHAIALLIGCYVWGDWTTVLIINLDANLTGVFTSIFVLCAPSKFVYVS
CAVLYGVTGLLDMILVAAWFNCEYIDANAGILTLLAMPNIIASFSCFLGC
AWSLKVFHICDRDSDQRVPEASDLFLA*
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mRNA from alignment at Ecto-sp13_S_contig10710:1..2107+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10710.650.1 ID=mRNA_Ecto-sp13_S_contig10710.650.1|Name=mRNA_Ecto-sp13_S_contig10710.650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2107bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10710:1..2107+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCCATCCACGCCATCGCTCTGCTTATCGGCTGCTACGTATGGGGTCA
GTGCTGACGCTTCAAGCAGTACATAAGTATTTGAGTGTGTAGCATCACAG
CCAGCTTCAGGCGGTCGTTGTGGAATGGGCTGGGCTGCCACATAAGTATT
TGGGCGTGTAGCATCACAGCCAGCTACAGGCGGTCGTTGTGGAATGGGCT
GGGCTGCCACGCTTGCAATATTTGCTGACCGCTAGTCTCATCGAGGCGGA
TATTCGATAACCTATGTTGTGAATGACCCCATCACGTCGTTGCAGGATGC
ATCCATCCGCAGTCAGTAAAAACAAGTGCATATACATTGGAGAGGTGTTG
TCAATCTCGCGAAACCGAGGCATGGCGTAAGCAATGTACTCAAAGTAGAA
GTTTGAAAGATTGGCATCGGTGCCCATGTGAGGTCCTGGTAGATACCTCA
TCGTGGTAAATATTTATTAGCACAACAAGAAGTGCCAAAACTTACCTCGT
CTATGCTCTACACGCAACGTGGGTGGCAAAAGGTGTTCGTCGAAATAGTT
TGTAACAAGGCCGCATCCGGCGACGATATCCCTGTCCATCCAATGTATGA
GCGGCGCGAACCTGCACTTCACCCGCTGACCAGATACGCTGTATGGTTTA
GGCTTTGAGACTTCTGTAAGGTGGGATCTTGTCTTCCGCCAAGAACGCAA
CATCAGTGGGTTAATTTATTATGTTCGCCGGGCTTGAATGTTCGGGAAGA
CTTCGCACCATGCTGTTGCCTAATCGTTACGACAAATCACTAACTCGCCC
TCCAAGCTCTACATGGTGTTTTACAACGATCCGCCCGCGCTTTTTCATCC
CACTGCCCCTCTTGACAGGAGATTGGACCACGGTGCTGATTATCAACTTG
GACGCCAATCTCACTGGGGTTTTCACGAGCATCTTTGTGCTGTGCGCCCC
CTCAAAATTCGTGTACGTTTCCTGTGCTGTTTTGTACGGCGTGACGGGAC
TCCTCGACATGATTCTCGTGGCGGCGTGGTGAGTGGTCCAGTGCCGAGTG
CAGGAACTTTGCGATCTCACATTCTAAGCCGCGCTTATGTGGGAGAACGC
GGTAAGTGGGTATCGTGATGTGGGTTATCCCTTAACTTGGCACCACTAGC
TCAACTGCCGATGTTTGTTATCGCTTCCGACTTTGGTACCCTAGGTACCT
CAGTGTGCCTGGCGTGCGTTCATCGATGCAATCGTTACGATAACACCTGC
ACCCAAAACTCTTCCTCCCCGTTCGCCGCACATACCGAACGTTTCCATGA
GCAGGTTCAACTGCGAGTATATCGATGCCAACGCCGGAATTTTGACCTTG
CTGGCTATGCCGAATATTATCGCGAGCTTTTCCTGCTTCCTCGGATGCGC
ATGGTCGTTGAAGGTTTTCCACATCTGCGACAGGGATAGCGACCAGCGTG
TGCCCGAGGCTTCAGACCTCTTTTTGGCTTGACCTCACACATGTACGTGC
GCATGTAAAAAGGTCTGGGGCGTGTCTGTGCCGTCTTCCTGTATATTTTG
TTGGTAGACGTCTTCCTCCTCGTCTCATCCAGATGCACATAGTGCAGTGT
CCTCTTCACTCCCCCCCACCCCCAACCGCCAAAAAAGATGTCAATACGTT
AGTTAATCCCCGGGGTTTTATCTTAGCAGTCACAAAAAAAAATGTCCTCC
TTGCCTCTTGATTTCCCTTGGAAGATTGTCTGGCGGCATAGTTCACTGCT
GGCTTTGCCGGCCCATTTTTGTTGCCTTCTCCGGGGGAATTCTGTCGTTT
AACTGTGTTCAGGAACTCGTGGCTTGAAACCTCAACTTTACGCGTGGCCT
GGAATAGAGTGCATTGAGCGGCTGGTGTTTGGAGCGGTTTCGATCAGGAC
ACACTGAACGCTTCCGCTCACCGCCCACTCCGACGTCCACCCGGCTTGAT
TTTTTACCTTCATTGAATACCTTTTTTCCTCGAGAAAGCCGCCCACCCTC
TTCGTTGCGATACCGTTGCACGTGCTGCCGCTCTTGTCTCGCAAAGCAGA
TCATATGAGCTCCCCTGTCTCCGCTGCAGCCCATCATCATATCTTCCTCT
AAGACGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10710:1..2107+

>mRNA_Ecto-sp13_S_contig10710.650.1 ID=mRNA_Ecto-sp13_S_contig10710.650.1|Name=mRNA_Ecto-sp13_S_contig10710.650.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10710:1..2107+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGCCATCCACGCCATCGCTCTGCTTATCGGCTGCTACGTATGGGGAGA
TTGGACCACGGTGCTGATTATCAACTTGGACGCCAATCTCACTGGGGTTT
TCACGAGCATCTTTGTGCTGTGCGCCCCCTCAAAATTCGTGTACGTTTCC
TGTGCTGTTTTGTACGGCGTGACGGGACTCCTCGACATGATTCTCGTGGC
GGCGTGGTTCAACTGCGAGTATATCGATGCCAACGCCGGAATTTTGACCT
TGCTGGCTATGCCGAATATTATCGCGAGCTTTTCCTGCTTCCTCGGATGC
GCATGGTCGTTGAAGGTTTTCCACATCTGCGACAGGGATAGCGACCAGCG
TGTGCCCGAGGCTTCAGACCTCTTTTTGGCTTGA
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