mRNA_Ecto-sp13_S_contig1069.632.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: D7FKD0_ECTSI (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKD0_ECTSI) HSP 1 Score: 298 bits (763), Expect = 4.440e-101 Identity = 143/177 (80.79%), Postives = 145/177 (81.92%), Query Frame = 1
Query: 16 VGDVKFXXXXXXXXXXXXXXXXXXXPFGEWRFLTDCCQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHPQHELSDKGGRFSKQKSMETWDPKDPKGANTKQPIRDLTEV 546
VGD+KF P+G QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSA AELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGNIWQEPGEP MYYKQPGHPQH LSDKGGRFSKQKSMETWDPKDPKG NTKQPIRDLTEV
Sbjct: 28 VGDIKFGDLKGEDSHGNKYYENKDYPYG---------QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAAAELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGNIWQEPGEPDMYYKQPGHPQHALSDKGGRFSKQKSMETWDPKDPKGLNTKQPIRDLTEV 195
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A835ZAE7_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAE7_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.070e-35 Identity = 68/142 (47.89%), Postives = 91/142 (64.08%), Query Frame = 1
Query: 130 HRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMKPIEIAVGQHTPHNDFVAPGRVDDV---NRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHPQHELSDKGGRFSKQKSMETWDPKDPKGANTKQPIRDLTEV 546
HRWVEYAD HNYDSS+VT WH WLH+M D P A+ P+ + + P++ V P V N S +RPRG G+GN++Q+ GEP +YYKQPGHP + +SDKGGRF+ + +E DP +P N K+P+R L E+
Sbjct: 53 HRWVEYADCHNYDSSTVTPEWHGWLHNMHDTPPDQSAD-PKRHELTSS-HDDCPYDTHVGPASAAPVLHQNLSGFRPRGYGVGNLFQKWGEPELYYKQPGHPANPISDKGGRFNTEPEVEFADPNNPTMLNPKKPLRSLDEL 192
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: W7TFP2_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TFP2_9STRA) HSP 1 Score: 132 bits (332), Expect = 1.310e-35 Identity = 79/186 (42.47%), Postives = 99/186 (53.23%), Query Frame = 1
Query: 16 VGDVKFXXXXXXXXXXXXXXXXXXXPFGEWRFLTDCCQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPS--AGAELPEMKPIEIAVGQHTPHNDFVAPGRVD-----DVNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHP---QHELSDKGGRFSKQKSMETWDPKDPKGANTKQPIRDLTE 543
+G+VKF PFG QHRWVEY DIHNY+ SS+ WH W+HHM+D P+ AG P MK IA GQHTP+ VA G D +N + R RG G+G++ Q+ GEP ++ QPGHP + + KGGRF K E W+P DP+G T QPIR L E
Sbjct: 27 MGEVKFGDLKGVDVNGNKYFENVEYPFG---------QHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMK---IAEGQHTPYQ--VAAGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 198
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A4D9CLK1_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLK1_9STRA) HSP 1 Score: 132 bits (332), Expect = 5.900e-35 Identity = 79/186 (42.47%), Postives = 99/186 (53.23%), Query Frame = 1
Query: 16 VGDVKFXXXXXXXXXXXXXXXXXXXPFGEWRFLTDCCQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPS--AGAELPEMKPIEIAVGQHTPHNDFVAPGRVD-----DVNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHP---QHELSDKGGRFSKQKSMETWDPKDPKGANTKQPIRDLTE 543
+G+VKF PFG QHRWVEY DIHNY+ SS+ WH W+HHM+D P+ AG P MK IA GQHTP+ VA G D +N + R RG G+G++ Q+ GEP ++ QPGHP + + KGGRF K E W+P DP+G T QPIR L E
Sbjct: 84 MGEVKFGDLKGVDVNGNKYFENVEYPFG---------QHRWVEYKDIHNYEPSSIPPEWHGWIHHMTDEVPAGKAGVTEPGMK---IAEGQHTPYQ--VATGLTDYQMEGQLNWTAHRSRGYGVGSLHQKAGEPDKFWVQPGHPLAAKKQEKGKGGRFEGLKGYEAWNPSDPEGKKTAQPIRSLDE 255
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A7S0XDH0_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDH0_9STRA) HSP 1 Score: 105 bits (263), Expect = 1.850e-25 Identity = 59/157 (37.58%), Postives = 82/157 (52.23%), Query Frame = 1
Query: 16 VGDVKFXXXXXXXXXXXXXXXXXXXPFGEWRFLTDCCQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGA---ELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHPQHELSDKGGRFSKQKSM 477
+GD+KF PF QHRW+EYADIH++D+S + WH W+HHM D P G +P + P+ AV ++ V P ++ VN +T+R RG +G++ P EP YYKQPGHP H L +KGGR+ KS+
Sbjct: 27 IGDIKFGVLKGTDRFGNKYYEDLSAPFN---------QHRWIEYADIHDFDASMIQPEWHGWMHHMYDEVPGEGTIKTGIP-LTPVSHAVYKNHVGYSNVEP--LEQVNLTTYRSRGYKVGSLKTGPDEPDRYYKQPGHPLHPLVEKGGRYKHIKSI 171
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A7S2GA95_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GA95_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 6.820e-22 Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 127 QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMK---PIEIAVGQHTPHNDFVAPGRVDD---VNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHPQHELSDKGGRFSKQKSMETWDPKDPKGA 510
QHRWVEYADIHNYD++SV WH W+ HM D S E K +EI G H+ ++ V + +N + R RG +G I Q+P E Y+K G Q++ S GRF QK ME WDP DP GA
Sbjct: 93 QHRWVEYADIHNYDAASVPPEWHGWMTHMQDAPGSDAREFITEKLKTKLEIDKGDHSIYDHHVGHTTYEMDTLLNHTMHRKRGFNIGGIKQKPEEEDKYHKHAGSAQNKGST--GRFESQKGMEYWDPADPDGA 224
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A7S3HS43_9STRA (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HS43_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 2.380e-20 Identity = 54/154 (35.06%), Postives = 74/154 (48.05%), Query Frame = 1
Query: 16 VGDVKFXXXXXXXXXXXXXXXXXXXPFGEWRFLTDCCQHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMKPIEIAVGQHTPHNDFVAPGRVD---------DVNRSTWRPRGAGMGNIWQEPGEPAMYYKQPGHPQHELSDKG 450
+GD+KF PFG QHRWVEY +IHNYDS+ + WH W+HH+ D TP+ +P+ P H +N V GRVD ++ + +R RG +G++ P E YYKQPGHP + S+KG
Sbjct: 29 IGDLKFGELKGTDKFGNKYFENQDLPFG---------QHRWVEYKNIHNYDSTMIQPEWHGWMHHVYDETPNDPVAVPDYLPTSTI--SHAIYNTHV--GRVDPAAAANDREQIDTTQYRRRGYKIGSLMTGPDEEDHYYKQPGHPLSKDSEKG 169
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: A0A1Z5JSL8_FISSO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JSL8_FISSO) HSP 1 Score: 76.6 bits (187), Expect = 1.080e-13 Identity = 49/119 (41.18%), Postives = 60/119 (50.42%), Query Frame = 1
Query: 127 QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMK------------PIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGN--IWQEPGEPAMYYKQPGHPQHELS 441
QHRWVE ADIHN+DS+ V WH WL M+D TPS E E K P + VG P+ +F N+S R RG G+GN + PG P YY QPG P ++ S
Sbjct: 60 QHRWVEPADIHNFDSAQVPPEWHGWLTCMNDATPSMENEYIEEKMSHLKSSEISHAPFKSNVGHQEPYFNF-----HHMHNQSLIRSRGYGIGNHVVGLPPGAPDAYYTQPGSPYNDAS 173
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: B7FVX2_PHATC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FVX2_PHATC) HSP 1 Score: 70.1 bits (170), Expect = 1.900e-11 Identity = 44/119 (36.97%), Postives = 61/119 (51.26%), Query Frame = 1
Query: 127 QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAE-LPEMK-----------PIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGAGMGN--IWQEPGEPAMYYKQPGHPQHELS 441
QHRWVE A+IH++DS+ + WH W+ M+D TPS E + +M P + +G P+ +F N+S R RG G+GN + PG P YY QPG P +E S
Sbjct: 35 QHRWVEPANIHDFDSTHIPPEWHGWMVSMNDATPSLEQEYIDKMSKHTIKGEISHAPYQSNIGHQEPYFNFNGMH-----NQSQIRSRGYGIGNHVVGLPPGAPDAYYTQPGSPYNEAS 148
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Match: C1EHV1_MICCC (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (Fragment) n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EHV1_MICCC) HSP 1 Score: 54.3 bits (129), Expect = 1.920e-6 Identity = 26/78 (33.33%), Postives = 40/78 (51.28%), Query Frame = 1
Query: 127 QHRWVEYADIHNYDSSSVTASWHPWLHHMSDHTPSAGAELPEMKPIEIAVGQHTPHNDFVAPGRVDDVNRSTWRPRGA 360
+HRWVEYAD+ NY++S+V + WH WL H+ D A P+ + F+A G V ++P+G+
Sbjct: 23 RHRWVEYADLDNYNASTVPSEWHGWLSHVDDEPGLATRTAPKYQA------------KFIAGGLTTGVQGEMYQPKGS 88 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1069.632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1069.632.1 >prot_Ecto-sp13_S_contig1069.632.1 ID=prot_Ecto-sp13_S_contig1069.632.1|Name=mRNA_Ecto-sp13_S_contig1069.632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=183bp MAPRKVGDVKFGDFKGEDAHGNKYYENKEYPFGEWRFLTDCCQHRWVEYAback to top mRNA from alignment at Ecto-sp13_S_contig1069:978..3540+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1069.632.1 ID=mRNA_Ecto-sp13_S_contig1069.632.1|Name=mRNA_Ecto-sp13_S_contig1069.632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2563bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1069:978..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1069:978..3540+ >mRNA_Ecto-sp13_S_contig1069.632.1 ID=mRNA_Ecto-sp13_S_contig1069.632.1|Name=mRNA_Ecto-sp13_S_contig1069.632.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=549bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1069:978..3540+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |