mRNA_Ecto-sp13_S_contig10668.616.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10668.616.1
Unique NamemRNA_Ecto-sp13_S_contig10668.616.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10668.616.1 vs. uniprot
Match: D7FM59_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM59_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.160e-39
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = 1 
Query:    1 QSGVVGDGRGTAVGRGKAISNVAVSKGRGKGKPGVGTARQKEADHPLAKWLNEWTERKGRGWEGDVPPVEGLSMREEVDKLLAQ 252
            +SGVVGDGRG AVGRGKAISNVAVSKGR KGK G GTARQ+EADHPLAKWLNEWTERK RGWEGDVPPV+GL++REEV+KLLAQ
Sbjct:  516 KSGVVGDGRGPAVGRGKAISNVAVSKGRXKGKAGGGTARQREADHPLAKWLNEWTERKERGWEGDVPPVQGLTVREEVNKLLAQ 599
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10668.616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FM59_ECTSI1.160e-3986.90Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10668contigEcto-sp13_S_contig10668:5025..5658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score149.8
Seed ortholog evalue5.8e-34
Seed eggNOG ortholog2880.D7FM59
Model size261
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.interleukin-8 biosynthetic process
EggNOG OGsKOG4308@1,KOG4308@2759
Cds size261
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462545.7000782-CDS-Ecto-sp13_S_contig10668:5024..51361681462545.7000782-CDS-Ecto-sp13_S_contig10668:5024..5136Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 5025..5136 -
1681462545.7127647-CDS-Ecto-sp13_S_contig10668:5509..56581681462545.7127647-CDS-Ecto-sp13_S_contig10668:5509..5658Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10668 5510..5658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10668.616.1prot_Ecto-sp13_S_contig10668.616.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10668 5025..5658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10668.616.1

>prot_Ecto-sp13_S_contig10668.616.1 ID=prot_Ecto-sp13_S_contig10668.616.1|Name=mRNA_Ecto-sp13_S_contig10668.616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=87bp
QSGVVGDGRGTAVGRGKAISNVAVSKGRGKGKPGVGTARQKEADHPLAKW
LNEWTERKGRGWEGDVPPVEGLSMREEVDKLLAQAS*
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mRNA from alignment at Ecto-sp13_S_contig10668:5025..5658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10668.616.1 ID=mRNA_Ecto-sp13_S_contig10668.616.1|Name=mRNA_Ecto-sp13_S_contig10668.616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=634bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10668:5025..5658- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTCCGGGGTAGTCGGAGATGGGAGGGGGACAGCAGTTGGCAGAGGAAA
GGCCATCAGCAACGTCGCGGTATCCAAGGGGAGGGGCAAGGGAAAGCCCG
GAGTGGGGACGGCCCGCCAAAAGGAGGCCGACCATCCGCTAGCTAAATGG
TGCGGGAGTAACCATCTCCTTGCTTCCCTTGTGGAACAGTGATTTTTTTA
GACTGCTGTCCTTCCCCCCGTTTCAATTCTTTTCAACCAGTGGATGTGAG
CATCCGGTGGTCTAGTGGGGGTTTTCGTACAACGTACTATTTTTCAGCTG
TGGGTTCGAATCCCACTCGGGAGAGTACAATGTGCAATTCTGCGGTGAAA
GCAAACATTCGTGGGCACACTGCTATGGACGCGCAAACGTCCTAGGGTCA
CGCCTAAGCATCATCATGCCGGTGGTAGAGAGAAACGATATCTCAGCGAA
TGACACGATGTATGCGTGCAGGCTTTCGTCCGACTGTAATCGACGGGGTC
AACTACTTTCGTTCATGGACAGGTTGAACGAGTGGACTGAACGGAAGGGA
AGGGGGTGGGAAGGCGATGTTCCTCCAGTCGAAGGACTTTCTATGCGGGA
AGAGGTTGACAAGCTCTTGGCTCAGGCAAGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10668:5025..5658-

>mRNA_Ecto-sp13_S_contig10668.616.1 ID=mRNA_Ecto-sp13_S_contig10668.616.1|Name=mRNA_Ecto-sp13_S_contig10668.616.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=261bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10668:5025..5658- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTCCGGGGTAGTCGGAGATGGGAGGGGGACAGCAGTTGGCAGAGGAAA
GGCCATCAGCAACGTCGCGGTATCCAAGGGGAGGGGCAAGGGAAAGCCCG
GAGTGGGGACGGCCCGCCAAAAGGAGGCCGACCATCCGCTAGCTAAATGG
TTGAACGAGTGGACTGAACGGAAGGGAAGGGGGTGGGAAGGCGATGTTCC
TCCAGTCGAAGGACTTTCTATGCGGGAAGAGGTTGACAAGCTCTTGGCTC
AGGCAAGTTAA
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