mRNA_Ecto-sp13_S_contig10648.597.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10648.597.1
Unique NamemRNA_Ecto-sp13_S_contig10648.597.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10648.597.1 vs. uniprot
Match: D7FME9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FME9_ECTSI)

HSP 1 Score: 251 bits (641), Expect = 5.620e-80
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 1 
Query:    1 QFCLEMVTCTLLGPLPLAILLCWFFHHFCVVVPRQAERERAVERLRRFPGQRRWHAGGWLIMMRARHQRSLARPKGWPIRLRKLERFNEANIVNKIPPEIELLETGRSRMNFVRAVMAVVEINEEGLFRHVISFL 405
            QFCLEMV CTLLGPLPLAILLCW+FHHF VVVPRQA RERAVERLR FPGQRRWHAGGWLIM+RARHQR LARPKGWPIRLRKLERFNEANIV+KIPPE+ELLE GRSRMNFVRAV AVVEINEEGLFRH+ISFL
Sbjct:  160 QFCLEMVICTLLGPLPLAILLCWYFHHFYVVVPRQAARERAVERLRTFPGQRRWHAGGWLIMIRARHQRFLARPKGWPIRLRKLERFNEANIVHKIPPELELLEAGRSRMNFVRAVTAVVEINEEGLFRHIISFL 294
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BLAST of mRNA_Ecto-sp13_S_contig10648.597.1 vs. uniprot
Match: D7FMF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF1_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.020e-33
Identity = 60/74 (81.08%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:  184 MMRARHQRSLARPKGWPIRLRKLERFNEANIVNKIPPEIELLETGRSRMNFVRAVMAVVEINEEGLFRHVISFL 405
            M+RARHQRSL R  GWP+RLRKLER+N+ANI NKIPPE+ELLE GRSRMNF RA MAVVE NEEGLFRH+ISFL
Sbjct:    1 MLRARHQRSLGRSTGWPVRLRKLERYNKANIFNKIPPELELLEAGRSRMNFARAAMAVVETNEEGLFRHIISFL 74
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BLAST of mRNA_Ecto-sp13_S_contig10648.597.1 vs. uniprot
Match: D8LNC9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNC9_ECTSI)

HSP 1 Score: 101 bits (251), Expect = 4.900e-24
Identity = 53/83 (63.86%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:  184 MMRARHQRSLARPKGWPIRLRKLERFNEANIV---------NKIPPEIELLETGRSRMNFVRAVMAVVEINEEGLFRHVISFL 405
            MMRAR QRSLAR KGW  RLRKL+ ++EANI+         ++ PPEIELLE GR +MNFVRAV A +EI EEGLFRH+IS+L
Sbjct:    1 MMRARRQRSLARSKGWQARLRKLDHYDEANIMKYAMRDFMGSQTPPEIELLEAGRLKMNFVRAVTAAIEIPEEGLFRHIISYL 83
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BLAST of mRNA_Ecto-sp13_S_contig10648.597.1 vs. uniprot
Match: D8LNB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNB4_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 1.980e-23
Identity = 54/84 (64.29%), Postives = 65/84 (77.38%), Query Frame = 1 
Query:  184 MMRARHQRSL-ARPKGWPIRLRKLERFNEANIVN---------KIPPEIELLETGRSRMNFVRAVMAVVEINEEGLFRHVISFL 405
            MMRARH+RS  AR KGW  RLRKLER++EA+I+          + PPEIELLE GR +MNFVRAV+AVVEI EEGLFRH++S+L
Sbjct:    1 MMRARHERSSSARSKGWRARLRKLERYDEASIIKYAMRDFMGGQTPPEIELLEAGRLKMNFVRAVIAVVEIQEEGLFRHIMSYL 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10648.597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FME9_ECTSI5.620e-8091.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FMF1_ECTSI1.020e-3381.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNC9_ECTSI4.900e-2463.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LNB4_ECTSI1.980e-2364.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10648contigEcto-sp13_S_contig10648:442..1582 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size755
Hectar predicted targeting categorysignal peptide
Exons2
Cds size393
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.3489728-UTR-Ecto-sp13_S_contig10648:441..4561681462544.3489728-UTR-Ecto-sp13_S_contig10648:441..456Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10648 442..456 +
1681462544.3736458-UTR-Ecto-sp13_S_contig10648:1235..15821681462544.3736458-UTR-Ecto-sp13_S_contig10648:1235..1582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10648 1236..1582 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462544.3575175-CDS-Ecto-sp13_S_contig10648:456..5501681462544.3575175-CDS-Ecto-sp13_S_contig10648:456..550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10648 457..550 +
1681462544.3656077-CDS-Ecto-sp13_S_contig10648:936..12351681462544.3656077-CDS-Ecto-sp13_S_contig10648:936..1235Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10648 937..1235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10648.597.1prot_Ecto-sp13_S_contig10648.597.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10648 457..1235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10648.597.1

>prot_Ecto-sp13_S_contig10648.597.1 ID=prot_Ecto-sp13_S_contig10648.597.1|Name=mRNA_Ecto-sp13_S_contig10648.597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MVTCTLLGPLPLAILLCWFFHHFCVVVPRQAERERAVERLRRFPGQRRWH
AGGWLIMMRARHQRSLARPKGWPIRLRKLERFNEANIVNKIPPEIELLET
GRSRMNFVRAVMAVVEINEEGLFRHVISFL*
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mRNA from alignment at Ecto-sp13_S_contig10648:442..1582+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10648.597.1 ID=mRNA_Ecto-sp13_S_contig10648.597.1|Name=mRNA_Ecto-sp13_S_contig10648.597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10648:442..1582+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGTTTTGTCTCGAGATGGTTACATGCACTTTGCTGGGGCCCTTGCCCTT
GGCGATCCTGCTCTGCTGGTTCTTCCACCACTTCTGCGTGGTAGTCCCCC
GACAAGCTGGTGAGTACGGTGGAAGCAGCCGTCGTAAGAGATTCTGCGTA
AGAGGGCTGGTCAGCTTGCCAATAAGCTATTGGCAACACCACCCGTAGAC
AATGGAAATTTACGCGTTGAACGTGGCGATAACCTTCCTTTTTTGAGTTA
ATCCGGAGTGCCAGCGATGTACACATCTTTCTTTCTCTCTCCAATACTTA
CAGGGCCTACGGTAAGGGGTGGCCCCTGTCCATAAGGCGAAACCGACGAA
AGATCTACTGCATGTAGAGGAAATCATATGAATACATTACGCCGTCATCT
GTCCCTCGTAGCTCACGGTCGAAGATGGAGAGCTGTGAGCACTCCCGAAA
CACCATCACGACGCCCATTGCGTTTCCCTCTTTCGTGTTTCGCAGAGAGG
GAGCGGGCGGTGGAACGCTTGCGAAGATTTCCGGGTCAGAGGAGGTGGCA
TGCGGGGGGCTGGCTGATCATGATGCGGGCGCGTCACCAAAGGTCCTTGG
CGAGGCCCAAGGGATGGCCTATCAGGTTGCGGAAGCTCGAACGTTTCAAC
GAGGCCAACATCGTCAATAAGATCCCTCCCGAGATAGAGCTACTAGAGAC
GGGAAGGTCTAGGATGAATTTTGTCCGGGCGGTGATGGCGGTGGTTGAGA
TTAATGAGGAAGGGTTGTTCCGCCACGTCATTTCGTTCCTGTAAATATGG
TATACTGCTGTAAAAATCATTCCCCAATAGAAAATTGGGGTTTTAGTTGT
CGCGAGTAATATACAAGCATAACAAATTATTATGTATGTCCTCGTTGCCC
CGAGAAGTTCACCATTTATTTGTCCCACTCGCTCGGGATGACGCGGGGGG
AACGTTGTCCCTCCCATGTTTTCGTATTGTACCAATCTTCCTGAAGTATT
TTTCGTCTACGACATTGATCATGATATCTCGTGGAGGTTTCCTTCCGTTA
ACCTTGACTTGAATTTGTTTCGATGAGACAAGATAAAATCCGAAAGAATG
CGGTGGACGGACTCGAAAATTTTGCCCAATGGATGCAGGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10648:442..1582+

>mRNA_Ecto-sp13_S_contig10648.597.1 ID=mRNA_Ecto-sp13_S_contig10648.597.1|Name=mRNA_Ecto-sp13_S_contig10648.597.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10648:442..1582+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTTACATGCACTTTGCTGGGGCCCTTGCCCTTGGCGATCCTGCTCTG
CTGGTTCTTCCACCACTTCTGCGTGGTAGTCCCCCGACAAGCTGAGAGGG
AGCGGGCGGTGGAACGCTTGCGAAGATTTCCGGGTCAGAGGAGGTGGCAT
GCGGGGGGCTGGCTGATCATGATGCGGGCGCGTCACCAAAGGTCCTTGGC
GAGGCCCAAGGGATGGCCTATCAGGTTGCGGAAGCTCGAACGTTTCAACG
AGGCCAACATCGTCAATAAGATCCCTCCCGAGATAGAGCTACTAGAGACG
GGAAGGTCTAGGATGAATTTTGTCCGGGCGGTGATGGCGGTGGTTGAGAT
TAATGAGGAAGGGTTGTTCCGCCACGTCATTTCGTTCCTGTAA
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