mRNA_Ecto-sp13_S_contig10638.590.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10638.590.1
Unique NamemRNA_Ecto-sp13_S_contig10638.590.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10638.590.1 vs. uniprot
Match: D8LIH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIH1_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 5.620e-38
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAAASETTTTGPLAKRMRVP 201
            MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAAASETTTTGP AKRMRVP
Sbjct:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAAASETTTTGPSAKRMRVP 67
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BLAST of mRNA_Ecto-sp13_S_contig10638.590.1 vs. uniprot
Match: A0A6H5LCN5_9PHAE (Utp12 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCN5_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 6.430e-32
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 1 
Query:    1 MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAAASETTTTGPLAKRMRVP 201
            MRTLQRALTSHQTDLFKLCQENQYTLSFLG IDGAKPVHGGETGADSAAAAS T TTGPLAKRMRVP
Sbjct:  874 MRTLQRALTSHQTDLFKLCQENQYTLSFLGGIDGAKPVHGGETGADSAAAASGTVTTGPLAKRMRVP 940
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10638.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIH1_ECTSI5.620e-3898.51Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LCN5_9PHAE6.430e-3295.52Utp12 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10638contigEcto-sp13_S_contig10638:2697..3474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size204
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_003690.1
Cds size204
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.695346-CDS-Ecto-sp13_S_contig10638:2696..28401681462543.695346-CDS-Ecto-sp13_S_contig10638:2696..2840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10638 2697..2840 -
1681462543.705886-CDS-Ecto-sp13_S_contig10638:3414..34741681462543.705886-CDS-Ecto-sp13_S_contig10638:3414..3474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10638 3415..3474 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10638.590.1prot_Ecto-sp13_S_contig10638.590.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10638 2697..3474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10638.590.1

>prot_Ecto-sp13_S_contig10638.590.1 ID=prot_Ecto-sp13_S_contig10638.590.1|Name=mRNA_Ecto-sp13_S_contig10638.590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=68bp
MRTLQRALTSHQTDLFKLCQENQYTLSFLGAIDGAKPVHGGETGADSAAA
ASETTTTGPLAKRMRVP*
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mRNA from alignment at Ecto-sp13_S_contig10638:2697..3474-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10638.590.1 ID=mRNA_Ecto-sp13_S_contig10638.590.1|Name=mRNA_Ecto-sp13_S_contig10638.590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=778bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10638:2697..3474- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACCCTCCAAAGAGCGCTCACGAGTCACCAGACCGACCTCTTTAA
GCTTTGCCAGGTATGTGTTTTGTTTATTGTTTACGAAATTCATCTCTTCC
ACACGTAAAAGCCAGGGATAGATAAGCAATGAACTCGTGGCGTTGTTTGA
TGACGAAGCCTGTCTCTACGGCTGTGTCTATTTTTTTCTCTTTGTGTTGT
TGGTGCTGGTCAGGGCCTACGTCGTGGGTGGTGGGTTGAAACGGTGGTTC
AAGTGTGACGAAAATTTTGTCTCTCGTGTTCACTCGTCCCAAAGCGTGCG
CATTCGCACACGCTTACGTGCAGTAAGATGGGAGGCATTTCTTGTGAGTC
CGAGAGGAAGTCAATGGTTCGGCTCATAGGTTGGATTCTGGTTTTGATAT
TTCTTGGTTTCGGCGTTTCTGATTTCTTGTCGCTTGTTCTAATAATGCAA
ATTTCTTGAGCAAAACACAAACTGGTCGAGCGTTCGATAGAGGATGCGAC
CTTGGCTGGCGGACACAATGACTGGAGGACACAATGGTCGGCTGTAGATG
TGGCACGTTCGTCGAAGTCGAAAACAAAACCGTTTTTATCTTTCCCCGCC
TATCTTTGGCCTCTCTGCCACATGTGCTCCTCAGGAGAACCAATATACAC
TCAGCTTTCTGGGAGCGATAGATGGCGCGAAACCGGTACACGGCGGGGAG
ACTGGTGCCGATTCGGCAGCAGCAGCATCAGAAACAACAACCACCGGTCC
TTTGGCGAAAAGAATGCGTGTGCCGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10638:2697..3474-

>mRNA_Ecto-sp13_S_contig10638.590.1 ID=mRNA_Ecto-sp13_S_contig10638.590.1|Name=mRNA_Ecto-sp13_S_contig10638.590.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=204bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10638:2697..3474- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGACCCTCCAAAGAGCGCTCACGAGTCACCAGACCGACCTCTTTAA
GCTTTGCCAGGAGAACCAATATACACTCAGCTTTCTGGGAGCGATAGATG
GCGCGAAACCGGTACACGGCGGGGAGACTGGTGCCGATTCGGCAGCAGCA
GCATCAGAAACAACAACCACCGGTCCTTTGGCGAAAAGAATGCGTGTGCC
GTGA
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