mRNA_Ecto-sp13_S_contig10633.588.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10633.588.1
Unique NamemRNA_Ecto-sp13_S_contig10633.588.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10633.588.1 vs. uniprot
Match: D8LLS8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLS8_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 3.180e-87
Identity = 147/159 (92.45%), Postives = 151/159 (94.97%), Query Frame = 3 
Query:   42 MVYPRRAAPQSRAGTVLALPLLAAALVLLCASLLPAGAEAMGPNDDGAGNNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEIELGGVYGRGWGTAAAEGG-RGGDWSASSTALVCGGVLAVSALMGFRSGIKVGTWTKEGYPVA 515
            M  PR AAPQSRA TVLALPLLAAALVL+CASLLPAGAEAMGPNDDGA NNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGE+E GGV+G GWGTAAAEGG RGGDWSASSTALVCGGVLAVSAL+GFRSGIKVGTWTKEGYPVA
Sbjct:    1 MGSPRLAAPQSRASTVLALPLLAAALVLVCASLLPAGAEAMGPNDDGAANNLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEMEFGGVHGGGWGTAAAEGGGRGGDWSASSTALVCGGVLAVSALVGFRSGIKVGTWTKEGYPVA 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10633.588.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LLS8_ECTSI3.180e-8792.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10633contigEcto-sp13_S_contig10633:1658..5127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1747
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002710.1
Cds size477
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.548965-UTR-Ecto-sp13_S_contig10633:1657..28861681462543.548965-UTR-Ecto-sp13_S_contig10633:1657..2886Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10633 1658..2886 -
1681462543.5802155-UTR-Ecto-sp13_S_contig10633:5086..51271681462543.5802155-UTR-Ecto-sp13_S_contig10633:5086..5127Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10633 5087..5127 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.5611227-CDS-Ecto-sp13_S_contig10633:2886..31261681462543.5611227-CDS-Ecto-sp13_S_contig10633:2886..3126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10633 2887..3126 -
1681462543.570905-CDS-Ecto-sp13_S_contig10633:4849..50861681462543.570905-CDS-Ecto-sp13_S_contig10633:4849..5086Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10633 4850..5086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10633.588.1prot_Ecto-sp13_S_contig10633.588.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10633 2887..5086 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10633.588.1

>prot_Ecto-sp13_S_contig10633.588.1 ID=prot_Ecto-sp13_S_contig10633.588.1|Name=mRNA_Ecto-sp13_S_contig10633.588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=159bp
MVYPRRAAPQSRAGTVLALPLLAAALVLLCASLLPAGAEAMGPNDDGAGN
NLGLLAQACASSFCGLGVDALDLWLSLEEVCRTGASNQPSLEGGGEIELG
GVYGRGWGTAAAEGGRGGDWSASSTALVCGGVLAVSALMGFRSGIKVGTW
TKEGYPVA*
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mRNA from alignment at Ecto-sp13_S_contig10633:1658..5127-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10633.588.1 ID=mRNA_Ecto-sp13_S_contig10633.588.1|Name=mRNA_Ecto-sp13_S_contig10633.588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3470bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10633:1658..5127- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGAGGCACAACCCCACCGTCCTCCGTAAGCGCACACCGATGGTGTAT
CCGAGACGTGCGGCACCACAATCGAGAGCCGGCACCGTGCTCGCATTGCC
GCTGCTCGCAGCGGCGCTGGTGCTGTTGTGCGCCTCTCTTCTGCCCGCCG
GGGCGGAGGCCATGGGGCCGAATGACGATGGCGCCGGTAACAACTTGGGG
CTCTTAGCGCAGGCCTGTGCGAGCTCGTTCTGCGGGCTAGGGGTGGACGC
TCTGGACCTGTGGTTGTCGCTGGAGGAGGTGAGGAGAGAGTGGATCGACG
CAGCGGTAGTGCGTGGTGTGTTACACTCGCAGTCACGACGCCCGGGCGAG
GCCGTAGTTCGTCACGTTTTTCTAAATTCAGCGTGTATATTACCATTGGT
CGTATGGTTTACACCTATGCACGACTTTGCGGGGAAACCGTACCCACCAT
CTTCGCACGCATCAACACACCCAGCCGCAGGCGACACGTGTATGGCGGCC
ACGTTTTTACTTTTGGGTGTGTTTGCTCTCGGTGGACACACGGGATCGAC
GTCCCAAATGCTGTCCCAACCGGCAGAAGTACGTAGAATTTGTGTTTTTT
TAGCAACCGTAGATAGATGACGCAAGATATCACACCCCTCGGACATACCG
GTATTTTGACAGCTCTAGTCCTCACTTCGCAGCAGAGAGACTGTTGGTGC
CAAAGTGACGACCTTGGGAGCTCCTCGTCGAGAGCTTTCCGAAAGCATGT
CGTGTCGTCCATGCAGCGTCGTGATCGTGGAGTAATCAGGCGTTGAAATC
CGACCATCTCGGGGTGGCAGTCTACAACCCGACCAGATTACGGATTCCAT
CGCAACAAACGATAATTTGCACAGAAAAAGAGGTGGAGAGAGGCGGTTGA
ACGGTGATCCTATTTTTTATCTGTTTGTGGGACGACAAGGGAAAGCAGCT
GAGGGAAGAGATTCCGTGTTCGTCATCCGCAGTTCATGTTCCATTCACCC
AAGCTAGCAAGCAGCCGTGTGCGTTTCCAAATATGCATGAAAGGGACATG
AGCATTGAAATCATGTCGACCTTTGTTGTTGATACGAGAGCTCTTTCGTT
CGTCAACCGGTAGGCATGTGTTCCGTCGACACTAAAATAGTGACGGAAAC
ACGACGCAATAAGGCCCGCCACCGTTGACGACTGCTGCCCAGCTTTTCGG
CGAAGTTAACGTCTTGGGTTAGCGTGTCACGGTCTTTGTTTACTTCTCCA
AGCAGGGGTGTGGCCATCACCGTCAGTGTCGCGAAGGGATGTTTCGAAGC
CCCAGTAGACCACCTTACGAGTACTTTGTTTGGCGAAGCCAGTCGCCGGA
GTACTTGAAAATTCTGTGGCCCCGTGAACATTTACCTTGCGCGGAAAGTG
TATCTGCTTTGTCGTACACGTGCGAAAGATGCCTACTACTGCTGTACTAA
AATCTAGAAAGTGTCGTGTGTGTCATTCATGGAAGCGACTGCCTTTCACC
CTTTGCGCCTCCACTGAGCGCTGTCGATCCCGACCACCCCGTCCACCGTC
AACGACACCGCCTTTGGCACTCGAGAAACCTCCTGGACATACCGCAGATG
GCACGCAACTAACGTGGTCAAGCACAGACTACTTCTTGCGGCAAAGCACG
TTCGTCTGGCTTTCTCTGTCGTGTCTTGAGAGGCGGTCTTTACCGTTTTC
CGGGTAGGGACGGACCGGAGCATTTGGGGCAAACGCTCTACCCTATCCTG
TTGGCACGTAAGCGGCGCTCGCGCCTTCCTACATGCCGCACACTTTCTTT
TCTGTGCTGAGGTTTCCTACACGTTGCAAGCATGAGAGAGGAAACAACTA
CAGCAGTTTTCACGGGTCTGCCACCAGCAGTTAGGCCGCATGATTTAACA
TATTGGGAAGGAAGAGACACACAAAGCTGATCCCTCCTTCTCTCGCGTTC
AATGCACGACGCGCCCACATGGCGTGCTGCTGCTCACCCACACCCAAACA
GGTTTGCCGTACCGGCGCCTCGAACCAACCTTCCCTTGAGGGCGGCGGCG
AGATCGAGTTGGGGGGTGTCTATGGCCGTGGGTGGGGCACGGCGGCGGCC
GAAGGCGGCCGCGGCGGCGACTGGTCCGCGAGCTCGACCGCGCTGGTGTG
CGGCGGGGTGTTGGCCGTTTCGGCGCTCATGGGATTCCGGTCCGGGATCA
AGGTCGGCACGTGGACGAAGGAGGGCTACCCGGTCGCGTAGCGGCGGCGG
TAGCGGCGACGACGGAAGGTGCGCCGCCTTTCGCCGCACCGCTGTTGCGT
TTTTTTCCATTTATTCGGGGGGTCATGGAAGTATGGAGGAATGTATTTTG
GTTTTGAAATCGAGGCAGAAGGGCTGGGGGAGAGGGGGGCTCGGGAAGAG
CGGATGTTTTCTAGACGACGGGGAGAAGAAGCCAGATAACCACCGCTGGG
CGAGTTTTTTTTCCCACCGAAACGCCGCCTGTTTTTTCTAGGGTACATAC
CGGCGGGCAACCAGGAATCAGAGTCATTTTTTGTAATGCTTGTGAGTGTG
GGGGGCGGAGAAAGCGAAGCTGTCTGCGGCAGCATACGTCCCGTGTTCGT
CGCTGTCTCTATGTATCTACACACGTTCATCTTGAGAGCTGTGTTGCAGT
GTGGTTGTGTGGCTCTCTCCCGATCCTGGAGAGCATGGGAAGGGTAGGAG
CGTTAGAGCTGAATGACGCCGGAGGCCTAAGGTCATCGGGATCGTTCGCA
CATGATCCGGTTTTATAGGATCCCCATTTGGTCCCTGCAATTATCGCTCA
TGTGTGTGTGTTCGAAAAGGTTATTCCTTGTGTGCGTCATACCGTTGTCT
GTGTGTGGAGTGTGTTGGCGAGAGGGGGCAGCGTTTTTGTCTACTCCCGC
TTGATCTGTCCACGAGAAGAGGGCTGGTAACGGTTTTTGTTTCCACAAGG
GCGGTATAGGACGTATTGAAAAAGGCAGGGAAGGAAAGGTTGTTTCCGTT
TTCCACACGGCTTGCATATCGTTTTCGTTTTTTTGTGTGTAATGTGTTGG
GTTTGGTGTTGTTACTGCTGTGTATGTTGATGTTCAACGTTTATCGTGTG
TACCTGTTGCAAAAGATTGAGTTACTTGTAGTTTGCATCTGTTTCTTATT
ATGCCGTTCCTTTTTTGAAAGAGAGCAAGCAGCACGGAGTAATGAGTGTT
CAGAACGAACAGACGAGAGATTGCATGGGGCACTTCACCCTTAGAGCCCT
GAGTCAACCGTCGACCACAAGTCGACGGCTGTACCCCGAGTGGCGGTTTG
ACCGGGATGTTGTGCCTACCGTGGTAGCGATTCCGGGTGCGGCCAAGGAG
GGAAAATGGCGGGGGGGGGAGTTCTTCCCCTGTAACGCTCGAACACGGCA
TGACAACAGCAGCTCTTCCGCCTGACTAGTGAAAAAGAGAGAGCGAAAAA
AGAAATGTGAAACGGTGTGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10633:1658..5127-

>mRNA_Ecto-sp13_S_contig10633.588.1 ID=mRNA_Ecto-sp13_S_contig10633.588.1|Name=mRNA_Ecto-sp13_S_contig10633.588.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10633:1658..5127- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTATCCGAGACGTGCGGCACCACAATCGAGAGCCGGCACCGTGCT
CGCATTGCCGCTGCTCGCAGCGGCGCTGGTGCTGTTGTGCGCCTCTCTTC
TGCCCGCCGGGGCGGAGGCCATGGGGCCGAATGACGATGGCGCCGGTAAC
AACTTGGGGCTCTTAGCGCAGGCCTGTGCGAGCTCGTTCTGCGGGCTAGG
GGTGGACGCTCTGGACCTGTGGTTGTCGCTGGAGGAGGTTTGCCGTACCG
GCGCCTCGAACCAACCTTCCCTTGAGGGCGGCGGCGAGATCGAGTTGGGG
GGTGTCTATGGCCGTGGGTGGGGCACGGCGGCGGCCGAAGGCGGCCGCGG
CGGCGACTGGTCCGCGAGCTCGACCGCGCTGGTGTGCGGCGGGGTGTTGG
CCGTTTCGGCGCTCATGGGATTCCGGTCCGGGATCAAGGTCGGCACGTGG
ACGAAGGAGGGCTACCCGGTCGCGTAG
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