mRNA_Ecto-sp13_S_contig10626.584.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10626.584.1
Unique NamemRNA_Ecto-sp13_S_contig10626.584.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10626.584.1 vs. uniprot
Match: A0A6H5JW67_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW67_9PHAE)

HSP 1 Score: 416 bits (1070), Expect = 3.230e-136
Identity = 410/537 (76.35%), Postives = 421/537 (78.40%), Query Frame = 1 
Query:    1 GGAGAGARPSSAAQEVGKAARQGQAGRVDGILMWGRSELPNGLEGEQFFPDVVPKVDPVDFHDAGEEESGNYDLVEDLHTEETYKVAKDQALEFYASGSGPRLERARARAARAAKNEKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSFVRSSGEGGXDXXXXXXXXXXXXXXGYSSYGGRXXXXXXXXXXXXXXG---GTKKKDDGTXXXXXXXXXXXREEAVEEDLERYWSETPSGVFASSSSXXXXXXXXXXXXXXXXARPIAASAASRADKSGDGVGGNKAARPRLGGASGRANGTSGSGDAALDDGGRVVGADSASGGVAGASVQANGGTSGASAERVRAGENDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGLLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSPVLTSMDVSASGCDEERXXXXXXXXXXXXXDEGKGRDR 1602
            GG GAG RPSSAAQEVGKAARQGQAGRVDGIL+WGRSELPNGLEGEQFFPDVVPKVDPVDFHD+GEEESGNYDLVEDL TEETYKVAKDQALEFYASGSGPRLERA              XXXXXXXXXXXX                 XXXXXXXXXXX   VRSSG   X XXXXXXXXXXXXXX        XXXXXXXXXXXX  G   GTKKKDDG  XXXXXXXXXXREEA+EEDLERYWSETPSGVFASSS XXXXXXXXXXXXX   AR IAA+AAS AD+SGD VGGN AARPRLG A+GRANG SGSGDA+L++ G VVGA SASGGV            GASAE+VRAGENDM XXXXXXXXXXXXXXXXXXXXXXXXX           X   L+   XXXXXXXXXXXXXXXXXXXXXXX      RGG DDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSG SDAESRRRSPVGGRSRSSPV T MDVSA GCDEER XXXXXXXX    DEGK RDR
Sbjct:    4 GGTGAGDRPSSAAQEVGKAARQGQAGRVDGILLWGRSELPNGLEGEQFFPDVVPKVDPVDFHDSGEEESGNYDLVEDLVTEETYKVAKDQALEFYASGSGPRLERAXXXXXXXXXXXXXXXXXXXXXXXXXXASGGTSSGLVPRQGSSDXXXXXXXXXXXXXXVRSSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDGENGGTKKKDDGADXXXXXXXXXXREEALEEDLERYWSETPSGVFASSSXXXXXXXXXXXXXXRPDARLIAATAASGADQSGDRVGGNGAARPRLGAATGRANGASGSGDASLENRGGVVGAYSASGGVXXXXXXXXXXXXGASAEKVRAGENDMDXXXXXXXXXXXXXXXXXXXXXXXXXGVDARQSQRDSXXXXLIRXXXXXXXXXXXXXXXXXXXXXXXXXKEDEGRRGGSDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGGSDAESRRRSPVGGRSRSSPVPTPMDVSAPGCDEEREXXXXXXXXAKRKDEGKRRDR 540
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BLAST of mRNA_Ecto-sp13_S_contig10626.584.1 vs. uniprot
Match: D7FIW7_ECTSI (Bromo domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIW7_ECTSI)

HSP 1 Score: 287 bits (734), Expect = 3.370e-81
Identity = 235/497 (47.28%), Postives = 239/497 (48.09%), Query Frame = 1 
Query:    1 GGAGAGARPSSAAQEVGKAARQGQAGRVDGILMWGRSELPNGLEGEQFFPDVVPKVDPVDFHDAGEEESGNYDLVEDLHTEETYKVAKDQALEFYASGSGPRLERARARAARAAKNEKGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFSFVRSSGEGGXDXXXXXXXXXXXXXXGYSSYGGRXXXXXXXXXXXXXXGGTKKKDDGTXXXXXXXXXXXREEAVEEDLERYWSETPSGVFASSSSXXXXXXXXXXXXXXXXARPIAASAASRADKSGDGVGGNKAARPRLGGASGRANGTSGSGDAALDDGGRVVGADSASGGVAGASVQANGGTSGASAERVRAGENDMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGLLGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP 1491
            GGAGAGARPSS AQEVGKAARQGQAGRV GILMWGRSELPNGLEGE FFPDVVPKVDPVDFHDAGEEESGNYDLVEDL TEETYK                                                                                                                                                                                           AR +AA+AAS ADKSGDGVGGN AARPRLGGASGRANGTS            VVGADSAS GVAGASVQANGGTSGASAER+RAGENDM                                      G+GL G      XXXXXXXXXXXXXXXXXXX      RGGGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP
Sbjct:   10 GGAGAGARPSSVAQEVGKAARQGQAGRVGGILMWGRSELPNGLEGEHFFPDVVPKVDPVDFHDAGEEESGNYDLVEDLVTEETYKPE-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ARHMAATAASEADKSGDGVGGNGAARPRLGGASGRANGTSXXXXXXXXXXXXVVGADSASXGVAGASVQANGGTSGASAERIRAGENDMDVDEEEEGGSVAEKGKGPARRPAAARGVDARQSQRESEGKGLAGEVDSDDXXXXXXXXXXXXXXXXXXXKGGEDGRGGGDDGLDGPGAVQLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSP 321
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10626.584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JW67_9PHAE3.230e-13676.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIW7_ECTSI3.370e-8147.28Bromo domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10626contigEcto-sp13_S_contig10626:2251..4770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score290.0
Seed ortholog evalue2.2e-75
Seed eggNOG ortholog2880.D7FIW7
Model size1604
KEGG koko:K03125
KEGG Pathwayko03022,map03022
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.negative regulation of protein autoubiquitination
EggNOG OGsCOG5179@1,KOG0008@2759
Cds size1602
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462543.2258909-CDS-Ecto-sp13_S_contig10626:2250..24141681462543.2258909-CDS-Ecto-sp13_S_contig10626:2250..2414Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10626 2251..2414 +
1681462543.2352784-CDS-Ecto-sp13_S_contig10626:2930..30201681462543.2352784-CDS-Ecto-sp13_S_contig10626:2930..3020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10626 2931..3020 +
1681462543.2428958-CDS-Ecto-sp13_S_contig10626:3421..47691681462543.2428958-CDS-Ecto-sp13_S_contig10626:3421..4769Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10626 3422..4769 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10626.584.1prot_Ecto-sp13_S_contig10626.584.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10626 2251..4769 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10626.584.1

>prot_Ecto-sp13_S_contig10626.584.1 ID=prot_Ecto-sp13_S_contig10626.584.1|Name=mRNA_Ecto-sp13_S_contig10626.584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=534bp
GGAGAGARPSSAAQEVGKAARQGQAGRVDGILMWGRSELPNGLEGEQFFP
DVVPKVDPVDFHDAGEEESGNYDLVEDLHTEETYKVAKDQALEFYASGSG
PRLERARARAARAAKNEKGRRRRRRPGGGSGNVSGGTSSGLVPRQGSSDD
DGNGGGSGGGFSFVRSSGEGGGDGSASSSGDSSSSSSGYSSYGGRSGSGS
GSDTSDGENGGTKKKDDGTDGLEGAGGRGGREEAVEEDLERYWSETPSGV
FASSSSSSSSTSSDSEAEPRPEARPIAASAASRADKSGDGVGGNKAARPR
LGGASGRANGTSGSGDAALDDGGRVVGADSASGGVAGASVQANGGTSGAS
AERVRAGENDMDVDEEEGGGSTADKGKGPARRRAAARSVDARQSQRDSEG
RGLLGGADSDDDEESSGSETERDSSGDGDGEGDEEGRGGGDDGLDGPGAV
QLLGLKAEFMPVSQGAWEDAVCLGDSGESDAESRRRSPVGGRSRSSPVLT
SMDVSASGCDEEREEGGGAAATSKKKDEGKGRDR
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mRNA from alignment at Ecto-sp13_S_contig10626:2251..4770+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10626.584.1 ID=mRNA_Ecto-sp13_S_contig10626.584.1|Name=mRNA_Ecto-sp13_S_contig10626.584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2520bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10626:2251..4770+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGTGCCGGTGCAGGCGCCCGGCCTTCCTCTGCAGCCCAGGAGGTTGG
AAAGGCCGCCCGGCAAGGACAAGCAGGACGAGTTGACGGGATTCTCATGT
GGGGGAGATCTGAGCTGCCCAATGGTCTCGAGGGAGAGCAGTTCTTCCCC
GATGTTGTTCCCAAGTAAGACAATCCACAATTAGACACCATCCGAAAGGG
ATGCAAGTATTTGTTGTAGCACCGACGGGTACGGGCGGTATGGGCCAAGC
GGGTGGTGTCTGTCCTGTCGTTGGTAGCGTCGTTGTTGCTTGCACATCGC
ATGCCTCGTCTCTGCGGTCATCGCCATGCGAGTTGGCGCTATACAACTGC
TGGTAGCATGCAGTGCGTGCCGCCTACAAGAGAAGGAAAGACTGTAGGCT
ACATTCTACTTTGAACGTGAGATTAAGTCGTTCATGTCGGCCCCATCCCG
TGGGCTTCGAGCCTCGAAACTATTTAGCACTATAGTACGTTGATGCCGCT
CCACACGAGCTTCCGGTGTAGCAGCAGTAACAACCTACGAACGTGGTGTA
GAGTGACTAACTCCTCGAGATCGCCTCACAACCTTTGCGACCCCCTCTCG
CCGTTACACCGTGCTGAGCGGGCGCTGTGCATGCTTCAAAAGCTTGACCG
CTGTGCCTTTGTTTTTGTCGTTGCTGCAAGGGTGGACCCCGTGGACTTCC
ACGATGCCGGAGAAGAGGAGAGTGGCAACTACGACCTTGTCGAGGACCTC
CATACCGAAGAAACCTACAAGTGAGTTACTGTTACTGTTGCTGTTATATT
AGGGTATGTCCGTGTTTGCCAGGGGTCCGTCGTCAGGGGTTTATGCGCGA
TTTTGGACCCTTTTCCTTCGGACGATTTGAGCCCGGTGCGTTCGGCGTTG
GGCGTGCGCGGTGCGTCCGAGGCTCTCCGGAGGGAGGCGCATGAGTGTTC
GTACTCCGGATTTCCTAGTACCACACCATACCTCTAGAAGCCTTGAGGAG
AGAGACCCCGCCTTTCACTGGCAACGCTCCCTCGTGTTGTCTACTCTTTC
CATTCCTCCGTTGATCGTTCGAGGCAATCATGCAGTATCGTCGCTGTGCC
CCTCCTGCCCCTCGTGTGTTTGCCTCGGCGTCTTGGGCCTACGCTACCTG
TCATACGTGACATGTCTTTAGGGTGGCGAAAGACCAGGCGTTGGAGTTCT
ACGCGTCGGGGAGCGGCCCGCGTCTAGAACGGGCGCGCGCGCGCGCGGCC
CGAGCCGCGAAGAACGAAAAGGGGCGCCGCCGTCGCCGTCGCCCTGGTGG
AGGTAGCGGTAACGTTAGCGGCGGGACATCCTCGGGTTTGGTGCCACGGC
AAGGCTCTTCGGATGACGACGGGAACGGTGGTGGTAGTGGTGGTGGGTTT
TCTTTTGTCCGTAGCAGTGGTGAAGGTGGGGGCGACGGCAGCGCTAGCAG
CAGCGGCGACAGCAGCAGCAGCAGTAGCGGGTACAGCAGCTACGGCGGCC
GTAGCGGCAGCGGCAGCGGCAGCGACACCAGCGACGGAGAAAACGGCGGC
ACGAAGAAGAAGGACGACGGTACCGATGGCCTCGAAGGAGCGGGCGGGAG
GGGCGGCAGAGAGGAGGCCGTGGAGGAGGACCTAGAGAGGTACTGGTCAG
AGACACCATCGGGGGTGTTTGCATCCTCCTCTTCGTCATCGTCGTCGACC
TCTTCTGACTCGGAAGCTGAACCAAGACCTGAGGCAAGACCTATCGCCGC
AAGCGCCGCTTCACGGGCCGACAAAAGCGGTGACGGAGTTGGGGGAAACA
AAGCTGCCCGGCCACGCCTCGGTGGTGCGAGCGGGCGCGCCAACGGTACT
AGCGGCAGCGGTGACGCCGCCCTGGACGACGGAGGACGGGTTGTTGGCGC
CGATAGCGCGAGTGGCGGCGTTGCGGGTGCCAGTGTTCAAGCCAACGGCG
GCACCTCGGGTGCAAGCGCTGAGAGGGTTAGGGCCGGTGAAAACGACATG
GACGTGGACGAGGAGGAGGGGGGGGGTTCGACGGCTGACAAGGGCAAGGG
GCCCGCGCGTCGCCGGGCGGCGGCTCGGAGCGTTGACGCACGGCAGTCTC
AGAGGGACTCGGAGGGAAGGGGGCTATTAGGAGGGGCGGACAGTGATGAC
GACGAGGAGAGCTCAGGCAGTGAGACGGAAAGGGACAGTAGCGGCGACGG
CGACGGAGAAGGAGACGAGGAGGGGAGGGGGGGAGGCGACGATGGCCTGG
ACGGCCCGGGAGCGGTGCAACTGCTGGGCCTAAAGGCGGAGTTCATGCCC
GTGTCGCAGGGCGCGTGGGAGGACGCCGTCTGCCTAGGAGACTCCGGCGA
AAGCGATGCTGAATCGCGCCGTCGCTCTCCGGTCGGCGGCCGTTCCAGGT
CGTCACCGGTGCTGACGTCGATGGATGTGTCCGCGTCTGGGTGTGACGAG
GAGAGGGAGGAAGGGGGAGGGGCTGCGGCCACGTCGAAAAAGAAAGACGA
AGGAAAAGGGCGGGATAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10626:2251..4770+

>mRNA_Ecto-sp13_S_contig10626.584.1 ID=mRNA_Ecto-sp13_S_contig10626.584.1|Name=mRNA_Ecto-sp13_S_contig10626.584.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1602bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10626:2251..4770+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGGTGCCGGTGCAGGCGCCCGGCCTTCCTCTGCAGCCCAGGAGGTTGG
AAAGGCCGCCCGGCAAGGACAAGCAGGACGAGTTGACGGGATTCTCATGT
GGGGGAGATCTGAGCTGCCCAATGGTCTCGAGGGAGAGCAGTTCTTCCCC
GATGTTGTTCCCAAGGTGGACCCCGTGGACTTCCACGATGCCGGAGAAGA
GGAGAGTGGCAACTACGACCTTGTCGAGGACCTCCATACCGAAGAAACCT
ACAAGGTGGCGAAAGACCAGGCGTTGGAGTTCTACGCGTCGGGGAGCGGC
CCGCGTCTAGAACGGGCGCGCGCGCGCGCGGCCCGAGCCGCGAAGAACGA
AAAGGGGCGCCGCCGTCGCCGTCGCCCTGGTGGAGGTAGCGGTAACGTTA
GCGGCGGGACATCCTCGGGTTTGGTGCCACGGCAAGGCTCTTCGGATGAC
GACGGGAACGGTGGTGGTAGTGGTGGTGGGTTTTCTTTTGTCCGTAGCAG
TGGTGAAGGTGGGGGCGACGGCAGCGCTAGCAGCAGCGGCGACAGCAGCA
GCAGCAGTAGCGGGTACAGCAGCTACGGCGGCCGTAGCGGCAGCGGCAGC
GGCAGCGACACCAGCGACGGAGAAAACGGCGGCACGAAGAAGAAGGACGA
CGGTACCGATGGCCTCGAAGGAGCGGGCGGGAGGGGCGGCAGAGAGGAGG
CCGTGGAGGAGGACCTAGAGAGGTACTGGTCAGAGACACCATCGGGGGTG
TTTGCATCCTCCTCTTCGTCATCGTCGTCGACCTCTTCTGACTCGGAAGC
TGAACCAAGACCTGAGGCAAGACCTATCGCCGCAAGCGCCGCTTCACGGG
CCGACAAAAGCGGTGACGGAGTTGGGGGAAACAAAGCTGCCCGGCCACGC
CTCGGTGGTGCGAGCGGGCGCGCCAACGGTACTAGCGGCAGCGGTGACGC
CGCCCTGGACGACGGAGGACGGGTTGTTGGCGCCGATAGCGCGAGTGGCG
GCGTTGCGGGTGCCAGTGTTCAAGCCAACGGCGGCACCTCGGGTGCAAGC
GCTGAGAGGGTTAGGGCCGGTGAAAACGACATGGACGTGGACGAGGAGGA
GGGGGGGGGTTCGACGGCTGACAAGGGCAAGGGGCCCGCGCGTCGCCGGG
CGGCGGCTCGGAGCGTTGACGCACGGCAGTCTCAGAGGGACTCGGAGGGA
AGGGGGCTATTAGGAGGGGCGGACAGTGATGACGACGAGGAGAGCTCAGG
CAGTGAGACGGAAAGGGACAGTAGCGGCGACGGCGACGGAGAAGGAGACG
AGGAGGGGAGGGGGGGAGGCGACGATGGCCTGGACGGCCCGGGAGCGGTG
CAACTGCTGGGCCTAAAGGCGGAGTTCATGCCCGTGTCGCAGGGCGCGTG
GGAGGACGCCGTCTGCCTAGGAGACTCCGGCGAAAGCGATGCTGAATCGC
GCCGTCGCTCTCCGGTCGGCGGCCGTTCCAGGTCGTCACCGGTGCTGACG
TCGATGGATGTGTCCGCGTCTGGGTGTGACGAGGAGAGGGAGGAAGGGGG
AGGGGCTGCGGCCACGTCGAAAAAGAAAGACGAAGGAAAAGGGCGGGATA
GG
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