mRNA_Ecto-sp13_S_contig10620.579.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10620.579.1
Unique NamemRNA_Ecto-sp13_S_contig10620.579.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10620.579.1 vs. uniprot
Match: A0A6H5K4R3_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R3_9PHAE)

HSP 1 Score: 607 bits (1564), Expect = 6.370e-195
Identity = 310/423 (73.29%), Postives = 336/423 (79.43%), Query Frame = 1 
Query:  592 QHSSSM*RFGKDAVSKVLKRLSDRFKTA*AMLMEIKKARTKQDTRSLTYLHVEKALGDPTGREFRDVVEKLEKFDYRLYGIKVMGQGGEGKSRPGQTGTLVRNVHKKKTGEATRFFMVEDTRYNGFDIQWKGCGGASVFSTRDVLCGAERYGGNQGVTSPKDGDTRALLLLRGVLCMVNFQLQKYVVDDDRKIKRWGDTVTLPKEVCKTTLSLRMDAWRGIQAASLADTMTEYEESIIGKSGGGLLEEARCDGSLLVALGLGQYRATDTTGFVTNGYRFHNRYTTFVNHFVRGA*TWWKLRRPTSVESCASLL*RRG*RPTSFRXXXXXXXXXXRRICQTTRRSRRSAPSAPTTRPSVDWVHGCFLARAGVSTGHDVSDCFKWWTHGPLYRQIEFSRPEHLGDIQPTTENKTRISQTRRHRPF 1860
            +HSS + R GKDAVS VLKRLSD+FKTA  ML EIKKARTKQDTRSLTYLH+EKALGDPTGR+F DVVEKLEKFDYRLYGIKVMGQGG  +SRPGQ GTLVR+VH+KKTGE TRFF+ EDT YNGF+IQWKGCGG SV+STRDVLCGAERYGGNQGVTSPKD D R LL LRGVLCMVN Q+QKYV+DDDRKIKR  D VTLPKEVCK TLSLRMDAW+GIQA SLADTMTEYEESI+GKSGGGLLEEAR DGSL +ALGL +YRAT+TTGFVTNGYRFH+R+ TFVNHFVRGA + WKL RPTSVESC + L   G                           +     +P             LARA VSTGH VSDCFKWW H PLYRQIEF+RPEHLGDIQPTTEN TR+SQTRRHRPF
Sbjct:  689 KHSSLLWRRGKDAVSNVLKRLSDQFKTARTMLAEIKKARTKQDTRSLTYLHIEKALGDPTGRDFSDVVEKLEKFDYRLYGIKVMGQGGRVRSRPGQKGTLVRDVHRKKTGEVTRFFVDEDTGYNGFEIQWKGCGGTSVYSTRDVLCGAERYGGNQGVTSPKDDDARVLLFLRGVLCMVNVQVQKYVIDDDRKIKRRRDAVTLPKEVCKKTLSLRMDAWKGIQAVSLADTMTEYEESILGKSGGGLLEEARRDGSLFMALGLDRYRATNTTGFVTNGYRFHDRHMTFVNHFVRGAQSSWKLGRPTSVESCIAPL-SAGVATDKLSAGGAVDELSEEVDLPNYETKQTICTISPEDASKCGLGTRLLLARARVSTGHGVSDCFKWWAHCPLYRQIEFTRPEHLGDIQPTTENTTRVSQTRRHRPF 1110
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BLAST of mRNA_Ecto-sp13_S_contig10620.579.1 vs. uniprot
Match: A0A6H5L2T9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2T9_9PHAE)

HSP 1 Score: 474 bits (1221), Expect = 1.130e-159
Identity = 240/340 (70.59%), Postives = 261/340 (76.76%), Query Frame = 1 
Query:  838 VMGQGGEGKSRPGQTGTLVRNVHKKKTGEATRFFMVEDTRYNGFDIQWKGCGGASVFSTRDVLCGAERYGGNQGVTSPKDGDTRALLLLRGVLCMVNFQLQKYVVDDDRKIKRWGDTVTLPKEVCKTTLSLRMDAWRGIQAASLADTMTEYEESIIGKSGGGLLEEARCDGSLLVALGLGQYRATDTTGFVTNGYRFHNRYTTFVNHFVRGA*TWWKLRRPTSVESCASLL*RRG*RPTSFRXXXXXXXXXXRRICQTTRRSRRSAPSAPTTRPSVDWVHGCFLARAGVSTGHDVSDCFKWWTHGPLYRQIEFSRPEHLGDIQPTTENKTRISQTRRHRP 1857
            VMGQGG G+SRPGQ GTLVR+VH+KKTGE TRFF+ EDT YNGF+IQWKGCGG SV+STRDVLCGAERYGGNQGVTSPKD D R LL LRGVLCMVN Q+QKYV+DDDRKIKR  D VTLPKEVCK TLSLRMDAW+GIQA SLADTMTEYEESI+GKSGGGLLEE R DGSL +ALGLG+YRAT+TTGFVTNG RFH+R+ TFVNHFVRGA + WKL RPTSVESC + L   G                           +     +P             LARA VSTGH VSDCFKWW H PLYRQIEF+RPEHLGDIQPTTEN TR+SQTRRHRP
Sbjct:    2 VMGQGGRGRSRPGQKGTLVRDVHRKKTGEVTRFFVDEDTGYNGFEIQWKGCGGTSVYSTRDVLCGAERYGGNQGVTSPKDDDARVLLFLRGVLCMVNVQVQKYVIDDDRKIKRRRDAVTLPKEVCKKTLSLRMDAWKGIQAVSLADTMTEYEESILGKSGGGLLEEGRRDGSLFMALGLGRYRATNTTGFVTNGCRFHDRHMTFVNHFVRGAQSSWKLGRPTSVESCIAPL-SAGVATDKLSAGGAVDELSEEVDLPNYETKQTICTISPEDASKCGLGTRLLLARARVSTGHGVSDCFKWWAHCPLYRQIEFTRPEHLGDIQPTTENTTRVSQTRRHRP 340
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10620.579.1 vs. uniprot
Match: A0A6H5K5Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5Y8_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.010e-36
Identity = 78/93 (83.87%), Postives = 84/93 (90.32%), Query Frame = 1 
Query:  592 QHSSSM*RFGKDAVSKVLKRLSDRFKTA*AMLMEIKKARTKQDTRSLTYLHVEKALGDPTGREFRDVVEKLEKFDYRLYGIKVMGQGGEGKSR 870
            +HSS + R GKDAVS VLKRLSD+FKTA AML EIKKARTKQDTRSLTYLH+EKALGDPTGR+F DVVEKLEKFDY LYGIKVMGQGG G+SR
Sbjct:  281 KHSSLLWRRGKDAVSNVLKRLSDQFKTARAMLAEIKKARTKQDTRSLTYLHIEKALGDPTGRDFSDVVEKLEKFDYGLYGIKVMGQGGRGRSR 373
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10620.579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K4R3_9PHAE6.370e-19573.29PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L2T9_9PHAE1.130e-15970.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K5Y8_9PHAE1.010e-3683.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10620contigEcto-sp13_S_contig10620:229..2228 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2000
Hectar predicted targeting categoryother localisation
Exons1
Cds size795
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.9300938-UTR-Ecto-sp13_S_contig10620:228..9091681462542.9300938-UTR-Ecto-sp13_S_contig10620:228..909Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10620 229..909 +
1681462542.9609556-UTR-Ecto-sp13_S_contig10620:1704..22281681462542.9609556-UTR-Ecto-sp13_S_contig10620:1704..2228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10620 1705..2228 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.9497085-CDS-Ecto-sp13_S_contig10620:909..17041681462542.9497085-CDS-Ecto-sp13_S_contig10620:909..1704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10620 910..1704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10620.579.1prot_Ecto-sp13_S_contig10620.579.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10620 910..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10620.579.1

>prot_Ecto-sp13_S_contig10620.579.1 ID=prot_Ecto-sp13_S_contig10620.579.1|Name=mRNA_Ecto-sp13_S_contig10620.579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=265bp
MLMEIKKARTKQDTRSLTYLHVEKALGDPTGREFRDVVEKLEKFDYRLYG
IKVMGQGGEGKSRPGQTGTLVRNVHKKKTGEATRFFMVEDTRYNGFDIQW
KGCGGASVFSTRDVLCGAERYGGNQGVTSPKDGDTRALLLLRGVLCMVNF
QLQKYVVDDDRKIKRWGDTVTLPKEVCKTTLSLRMDAWRGIQAASLADTM
TEYEESIIGKSGGGLLEEARCDGSLLVALGLGQYRATDTTGFVTNGYRFH
NRYTTFVNHFVRGA*
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mRNA from alignment at Ecto-sp13_S_contig10620:229..2228+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10620.579.1 ID=mRNA_Ecto-sp13_S_contig10620.579.1|Name=mRNA_Ecto-sp13_S_contig10620.579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2000bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10620:229..2228+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTGGCATCCGCTGGCATCCGCTACGTAGGCGGACGGCTTATCTATCGGG
CCTGGAACGGGAAAGTAGTTGGCTTCCCCTGGCATACGCTTCGCAGGCGG
ACGCCATACCCATTCGGCCGCGAACAGGATTTGGCTCTCGCTAGCATCCG
CTTCGTAGGCGGACGGTTCGTACATTGGGAAACAAACGGGAATTCCGCTG
GCATCCGCTTCGTAGGCGGACGGCTTTTTCATTTGGACTCAAACGGGAAG
ATCGTTGGCTTTCGCTGGCATCCGCTTTGTGGTCGGAAGGCTTATTCATC
GGGCCACGAACGGGAAAGTCGTTGGCCTTGCTGGCATCCGCTTTGTAGCA
AAGTTTCCAACCACGAGGATACCGAAACGCTTCCTGGCTTTGGTGGCGTT
GACGAGGGGTTCACCTGTGACGCGGGGGATGCGGCGGATGTGGATGAGGA
AGAGGAAGAGGATGCCACGGATGTCGTTGTTTCGGGCCACAACCAGCCGT
CGTCATCCTCGGTCTCTGAGGATACCGATGGGCAGGTTTGGAGGGCGGTA
AAGCCGCCGAAGCGGATTGGCGTGGCTCACGAAACAACCGACAGCATTCC
TCCTCAATGTAGCGCTTTGGGAAAGACGCCGTATCGAAAGTGTTGAAGCG
TCTGAGCGACCGGTTCAAAACGGCCTGAGCGATGTTGATGGAAATCAAGA
AGGCTCGCACAAAACAGGATACCAGATCTTTGACGTACTTGCACGTCGAG
AAGGCTTTGGGTGACCCGACCGGCCGGGAGTTCCGTGACGTTGTGGAAAA
GCTTGAGAAATTCGACTACAGGCTGTACGGCATCAAGGTCATGGGCCAGG
GGGGGGAGGGCAAGAGTCGCCCAGGCCAGACGGGAACTTTGGTGCGAAAC
GTCCATAAGAAGAAGACGGGTGAGGCTACGAGATTTTTTATGGTCGAGGA
CACTAGGTACAACGGATTCGATATCCAATGGAAGGGTTGTGGTGGAGCAT
CGGTCTTCAGCACGCGCGATGTCCTTTGCGGGGCTGAGCGGTACGGAGGG
AATCAGGGCGTTACTTCTCCGAAGGACGGCGACACACGAGCTCTCTTGCT
TCTTCGCGGTGTTTTGTGCATGGTCAACTTTCAACTTCAAAAGTACGTTG
TCGATGATGATCGCAAGATCAAGAGATGGGGTGACACGGTAACCCTTCCC
AAGGAAGTCTGCAAGACCACACTGAGCCTCCGCATGGACGCATGGAGGGG
CATTCAGGCGGCGTCGCTGGCTGACACGATGACCGAGTATGAGGAATCAA
TTATCGGTAAATCGGGGGGAGGATTATTGGAGGAAGCGCGTTGCGATGGG
TCGCTTCTTGTGGCGCTGGGGCTGGGCCAGTATCGTGCGACGGACACCAC
CGGCTTCGTCACAAACGGTTACCGATTTCACAACCGCTACACGACGTTTG
TCAACCACTTTGTTCGCGGAGCTTAGACCTGGTGGAAGCTGCGACGTCCT
ACCAGCGTGGAGTCGTGTGCATCGCTCCTCTAACGGCGGGGGTAGCGACC
GACAAGCTTTCGGAGAGGGGAGCGGTCGACGAGCTTTCGGAGGAGGCGGA
TTTGCCAAACTACGAGACGAAGCAGACGATCTGCACCCTCCGCCCCGACG
ACGCGTCCAAGTGTGGACTGGGTACACGGTTGCTTTTTGGCCAGGGCCGG
GGTGTCGACTGGTCACGATGTTTCGGATTGCTTCAAGTGGTGGACACACG
GCCCCCTTTACAGACAGATCGAATTCAGCCGTCCCGAGCACCTGGGTGAC
ATCCAACCTACCACCGAAAACAAGACCAGGATCTCCCAGACGCGACGACA
CCGGCCATTTAAAAGAGCGCGGTTAAAATCAGTTCGACGAATTATCAGGA
CCTGCATGTTCTCAACAGCGTCTTCGATGCATATGATCCGGTGGGGTCCG
ACAAGAGGAATGAGGTCAACGCTCATGAGAACAACCTGTCTCGGCTGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10620:229..2228+

>mRNA_Ecto-sp13_S_contig10620.579.1 ID=mRNA_Ecto-sp13_S_contig10620.579.1|Name=mRNA_Ecto-sp13_S_contig10620.579.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10620:229..2228+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGATGGAAATCAAGAAGGCTCGCACAAAACAGGATACCAGATCTTT
GACGTACTTGCACGTCGAGAAGGCTTTGGGTGACCCGACCGGCCGGGAGT
TCCGTGACGTTGTGGAAAAGCTTGAGAAATTCGACTACAGGCTGTACGGC
ATCAAGGTCATGGGCCAGGGGGGGGAGGGCAAGAGTCGCCCAGGCCAGAC
GGGAACTTTGGTGCGAAACGTCCATAAGAAGAAGACGGGTGAGGCTACGA
GATTTTTTATGGTCGAGGACACTAGGTACAACGGATTCGATATCCAATGG
AAGGGTTGTGGTGGAGCATCGGTCTTCAGCACGCGCGATGTCCTTTGCGG
GGCTGAGCGGTACGGAGGGAATCAGGGCGTTACTTCTCCGAAGGACGGCG
ACACACGAGCTCTCTTGCTTCTTCGCGGTGTTTTGTGCATGGTCAACTTT
CAACTTCAAAAGTACGTTGTCGATGATGATCGCAAGATCAAGAGATGGGG
TGACACGGTAACCCTTCCCAAGGAAGTCTGCAAGACCACACTGAGCCTCC
GCATGGACGCATGGAGGGGCATTCAGGCGGCGTCGCTGGCTGACACGATG
ACCGAGTATGAGGAATCAATTATCGGTAAATCGGGGGGAGGATTATTGGA
GGAAGCGCGTTGCGATGGGTCGCTTCTTGTGGCGCTGGGGCTGGGCCAGT
ATCGTGCGACGGACACCACCGGCTTCGTCACAAACGGTTACCGATTTCAC
AACCGCTACACGACGTTTGTCAACCACTTTGTTCGCGGAGCTTAG
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