mRNA_Ecto-sp13_S_contig10619.576.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10619.576.1
Unique NamemRNA_Ecto-sp13_S_contig10619.576.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: D7FL11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FL11_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 2.900e-45
Identity = 78/103 (75.73%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRXXXXXXXXIVXXXXXXXXXXXXXXESPQWTQNKGPRSLPS 309
            MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR        IV               SPQWT NKGP SLPS
Sbjct:    1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFASPQWTPNKGPPSLPS 103
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A835YVT8_9STRA (Ribosomal protein L23/L15e core domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVT8_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.230e-20
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            M ++ WFP+  M +++ P+R RP QA+F++ PKMTK EVKEYL K+Y VPVKKVMTQNF GKR
Sbjct:    1 MGVKEWFPSFFMQLVTMPTRGRPQQAAFRVSPKMTKLEVKEYLLKVYGVPVKKVMTQNFLGKR 63
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A7S3QJC9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJC9_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.430e-14
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1 
Query:   10 RSWFPNMVMAM--ISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W PNM + +      +++ PA A+F+++PKMTK E+KEYLTKIYN+PVKKV T NF GKR
Sbjct:   11 RVWMPNMPILLDGAKNATKTAPATATFRVKPKMTKHEIKEYLTKIYNLPVKKVNTANFAGKR 72
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A1E7FSR6_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSR6_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W PNM M M+S  + +  +PA+A+F++ P+MTK E+KEYLTKIY +PV++V T N+ GKR
Sbjct:   13 RMWMPNMPMLMVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVRQVNTSNYMGKR 74
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A448YYR3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYR3_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 4.900e-13
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W PNM M ++S  + +  +PA+A+F++ P+MTK E+KEYLTKIY +PV+KV T N+ GKR
Sbjct:   10 RMWMPNMPMMLVSAKNATARQPARATFRVLPRMTKHEIKEYLTKIYGLPVQKVNTANYLGKR 71
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: K0TJH6_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TJH6_THAOC)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGPSRS--RPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W P+M + ++   + +   PAQA+F++ PKMTK EVKEYLTKIY +PV KV TQN+ GKR
Sbjct:   28 RMWMPHMPLVLLDAQNATLDTPAQATFRVLPKMTKHEVKEYLTKIYGLPVVKVRTQNYMGKR 89
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: B7FPJ8_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPJ8_PHATC)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-12
Identity = 35/62 (56.45%), Postives = 45/62 (72.58%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGPSRSR--PAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W P+M + M+S  S +   PA A F+  P+MTK E+KEYLTKIY++PVKKV T N+EGKR
Sbjct:   16 RMWMPSMPLTMVSARSATANGPAFAIFRTVPRMTKHEIKEYLTKIYDLPVKKVNTMNYEGKR 77
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A7S2AUA8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AUA8_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.170e-12
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGP--SRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGK 186
            R +FPNM MA++S       RP QA FK+ P MTK +++EYL KIY +PVKKVMT NF+GK
Sbjct:   18 REFFPNMYMALLSVRYLKSPRPTQAVFKVAPSMTKNDIQEYLRKIYGLPVKKVMTANFDGK 78
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A7S4IBC0_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IBC0_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.320e-12
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 1 
Query:   10 RSWFPNMVMAMISGPS--RSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            R W P M + ++   S   S+ A A F++ PKMTK E+KEYLTKIYN+PVKKV T N+ GKR
Sbjct:   11 RMWMPTMPITLVKARSANESQSAMAVFRVMPKMTKHEIKEYLTKIYNLPVKKVNTMNYLGKR 72
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BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Match: A0A6U3SB59_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SB59_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.770e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 1 
Query:    7 IRSWFPNMVMAMISG--PSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVPVKKVMTQNFEGKR 189
            +R W PNM + ++S    + +  A A+F++ PKMTK EVKE+LTKIYN+PV KV TQN+ GKR
Sbjct:   11 LRVWMPNMPIVLLSARNATETSAATATFRVLPKMTKHEVKEHLTKIYNLPVAKVNTQNYLGKR 73
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10619.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FL11_ECTSI2.900e-4575.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YVT8_9STRA5.230e-2061.90Ribosomal protein L23/L15e core domain-containing ... [more]
A0A7S3QJC9_9STRA4.430e-1456.45Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1E7FSR6_9STRA2.900e-1353.23Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A448YYR3_9STRA4.900e-1353.23Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
K0TJH6_THAOC1.010e-1254.84Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B7FPJ8_PHATC1.130e-1256.45Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2AUA8_9STRA1.170e-1257.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4IBC0_9STRA1.320e-1254.84Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6U3SB59_9STRA2.770e-1253.97Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10619contigEcto-sp13_S_contig10619:3680..5739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score151.8
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D7FL11
Model size312
KEGG koko:K02892
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Ribosomal protein L23
EggNOG OGs2CJ9U@1,2S3T6@2759
Ec32 ortholog descriptionRibosomal protein L25/L23
Ec32 orthologEc-21_002040.1
Cds size312
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462542.618476-CDS-Ecto-sp13_S_contig10619:3679..38321681462542.618476-CDS-Ecto-sp13_S_contig10619:3679..3832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10619 3680..3832 -
1681462542.6285875-CDS-Ecto-sp13_S_contig10619:4206..43161681462542.6285875-CDS-Ecto-sp13_S_contig10619:4206..4316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10619 4207..4316 -
1681462542.6389968-CDS-Ecto-sp13_S_contig10619:5690..57391681462542.6389968-CDS-Ecto-sp13_S_contig10619:5690..5739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10619 5691..5739 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10619.576.1prot_Ecto-sp13_S_contig10619.576.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10619 3680..5739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10619.576.1

>prot_Ecto-sp13_S_contig10619.576.1 ID=prot_Ecto-sp13_S_contig10619.576.1|Name=mRNA_Ecto-sp13_S_contig10619.576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MPIRSWFPNMVMAMISGPSRSRPAQASFKIQPKMTKWEVKEYLTKIYNVP
VKKVMTQNFEGKRKRIMGKRSIVPYKRPNFKKAIVTFESPQWTQNKGPRS
LPS*
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mRNA from alignment at Ecto-sp13_S_contig10619:3680..5739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10619.576.1 ID=mRNA_Ecto-sp13_S_contig10619.576.1|Name=mRNA_Ecto-sp13_S_contig10619.576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2060bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10619:3680..5739- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTATCAGATCATGGTTCCCGAACATGGTGATGGCCATGATTTCCGG
TGAGAAAATGCTTGCTAGGAACCCCATTCCACCGCATGTTGACTTGATTA
GACCTAAAGCAGTACCAGGTAGTCTTTAGCCTATGATATGCATGTCTGCA
ACCAATCCTTTTCTCCACGCTGAACAACGGGCCTGAGTGTAGAGTGTAGA
GCCCTCCGCTGTGCGTTACAGACGACATGAGTTTCTCAGTCACGTGGAAT
TCCAACCGATGCCGCTAATGGTACTCCTTAGGGGGGACAGGGAGGGAAAC
GGGCAGAGACAGATGTGGAATACCACGGGGGTTGCGTGTTTACAGCATAC
GGCCTACGCGAGCCAGCAATGTGTATAGAACAGCAACAGTAGGCGTGCCA
CCGATTAACTTCCTTTTTTCGCAACCCTGGGGTTCTCATTAATCAACAGT
TTTCCTGTAAGGTTGTTACGTAGCCGGATTCACGTCCAGACTTTTCGACC
ACTTGGAACCCTCAAGTCCTTCAGCATTGGTGGCGGTACGCATTGTACGT
ACGTACACCAGCTGACATCTTTTAGACGCCGAAATCAAACCGTTAGACTC
GTCGTGCTAGTCCAACGGTTTGGTTTCGGCGTCAAACAGTGTGCAGCCCG
GGTCTCACAAAAGTTAGTTCACGGTGGGTTCGAGACCCGGGCTGAACACT
AGAAGCCGAAAGCAAACCAATAGACATATGGGTAATGGTTTGGTTTCGGC
TTCTACACAACGAAGCCGTCGCACCCGGGGGCCGTGGCTGATGCTGGAAC
ACCTTTGGAATCTCGATGCCTGCCCCCAGCTGGTGGTCTTCTTCGCTAGC
AACTACATTTTTTGCGTCTGGATAATAAGCAGCAGCGCAAACAGAAACAT
AACAACCCTGGTTGGAACCTTTTGTCGCAGCGCAGCGGTGTCGACCGACC
CGCCGTCGTTCTTGAACGCCACGTCTCTCTTAGGTCCTGCAGTAAGGCTG
CCTTCTTGCAGGGCTGCCCCCTTTCCCGTCTCAACAACAACGGCGGCGGA
TTCTTGTGAGGGTGTGATTGCCAAACGTGTCGAAGCACAGGTCGGCATCG
TTCGTGTTGTGGCGAAGTGTGCAGCAGTAGTCGACTCCCATGCAACGAAC
GGTGCCGCGATTCTGATTGCCAAGAGACGTCGTTCAGGCCGGAAATGTTG
GGATGAGGCCTAGTACTGACGGTGGGTTGCTTGTTGAATAGGCGGTACTT
CGGACCGTCCAACTCAGTGCTCTCGACAGAAAACTACTCCCAGCCGCGTT
TCCCATTGTAGCCCTGCCCGTTATTTTTCTCGTCGGATCCAGTTGTGCTA
ATCCTGACGGTCCCCCATTCTCTGAAAACTTTGTGTGTGTTTTGCCGTGT
GTCTTTCATCTCGGTGACGAAAGGGCCGAGTAGATCAAGACCGGCTCAAG
CATCGTTCAAAATTCAGCCGAAGATGACCAAGTGGGAGGTGAAGGAATAC
CTAACCAAGATCTACAACGTGCCGGTCAAGAAGGTAAGGCGGGTCCCTGT
TGAACCAACAACAACAGCAGCTAGTCAACGCAGAGCTAACCCACTTTGCC
ACGGATCCGTTCGCAGCCTTACGCTCTAGGAATATTCGGCAGCGGGAATC
CGGGAGCTTGAGATATGAAGCATCCGCCGGCGGGAGCTCGTAAATTGTTT
CCCCGAGGTCGCCGCTCCGGCCGTAGCCTCGGGGACGTGTGAAAGCCAGC
GGATACGAAAATTCGTTCTTTGGAGGAGGCAAGCAAGGAAACGAGCAATC
AAATGAACCAAACCAACCACCGACCCACCGCCCCCCACAGTTTTGTTCCC
TATTGCTCGGTGTTCCCCCTGGTTTCACTCTCGGGCCCTTGCCTCTTCCC
TCGTCAGGTGATGACTCAGAACTTCGAGGGAAAGCGCAAGCGAATAATGG
GGAAGCGGTCGATCGTGCCGTACAAACGACCAAACTTCAAGAAGGCGATA
GTCACCTTCGAAAGTCCCCAGTGGACGCAGAACAAGGGGCCGCGGTCGCT
GCCTAGCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10619:3680..5739-

>mRNA_Ecto-sp13_S_contig10619.576.1 ID=mRNA_Ecto-sp13_S_contig10619.576.1|Name=mRNA_Ecto-sp13_S_contig10619.576.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10619:3680..5739- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTATCAGATCATGGTTCCCGAACATGGTGATGGCCATGATTTCCGG
GCCGAGTAGATCAAGACCGGCTCAAGCATCGTTCAAAATTCAGCCGAAGA
TGACCAAGTGGGAGGTGAAGGAATACCTAACCAAGATCTACAACGTGCCG
GTCAAGAAGGTGATGACTCAGAACTTCGAGGGAAAGCGCAAGCGAATAAT
GGGGAAGCGGTCGATCGTGCCGTACAAACGACCAAACTTCAAGAAGGCGA
TAGTCACCTTCGAAAGTCCCCAGTGGACGCAGAACAAGGGGCCGCGGTCG
CTGCCTAGCTAA
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