mRNA_Ecto-sp13_S_contig1059.547.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1059.547.1
Unique NamemRNA_Ecto-sp13_S_contig1059.547.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1059.547.1 vs. uniprot
Match: A0A6H5JHM0_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHM0_9PHAE)

HSP 1 Score: 1119 bits (2895), Expect = 0.000e+0
Identity = 915/1100 (83.18%), Postives = 932/1100 (84.73%), Query Frame = 1 
Query:    1 QEEYMSQMQDTTLAKTEAEKERCRVLQGLQAEHAAARAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQTRLEVELTAALSALAAARREGGESRGVAEQLRAEAGEASXXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAAVAKAAELSEQKRLLVREVKLSRRALAEATSVNRRLARAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAADKGGCGTAAAVPSPSEDGACDSEKAVGTAAPVAAARAAGERAVSDSSTDGGGAGLAANPTPLLRPETQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGRGRREEWREARLDCTLVEAGRRSRGSSVGXXXXXXXXXX-RESAGSWHGAREGSAPGPGLMMQFRNLSTGDVDVLVPSSEKPRGRASIESGGGDPVESRAPAATFEPHSSNLGLKITQTFAAASWPWAPKPSIEARAATAXXXXXXXXXXXXXTGNSTAVGAGDSAGARGGRSGSXXSIIXXXXXXXXXXXXXXXXXGDNCGSDARDGESAAAVTGSAAVDAAXXXXXXXXXXXX---YSAFVGAFEGVISSMGSSGGARDGQTVVPSLVLDEDXXXXXXXXXXXXXXGPLPSDTVTDVCGLDGGRPPAASWGGSGEVGGEVAAGGRAVPRRSVGALVCRRCGGTAEGPQNSTCTCLVPELGTGGAEPFDRDENQTTAGLSKLKGVFKSFNGGVKVARQMLDTAVRQNVAHNVPPVVAARSSSGGDRRPSLSSSVHAEATGSSXXXXXXXXXXXXXXPARASGVXXXDST-------------DATAGDRTGGDGVAAAAVIVSRASEDKAFSGDGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPDGSDDAGSVASGDGDDPSEGGGKNGXXXXXXXXXXXXXXXXXXXXXXXXXXXRAATGATAVVAASILPVSEDEDIAGEEAGAEKEEAEIRTSRSGENDADGGGTLDDYSRSPAEDDGGDADSTPGGGTEATAAGAPEAFIEHAAGVVSDDGTDVAAEARAG 3249
            QEEYMSQMQDTT AKTEAEKERCRVLQGLQAEHAAARAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQ RLEVEL AAL+ALAAARRE GESRGVAEQLRAEAG   XXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAAVAK AELSEQKRLLVREVKLSRR+LAEA+SVNRRL RAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                 PS+DGACDS KAVGTAAPVAAARAAGERAVSDSST+GGGAGLAANP PLLRP T+EXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX       EEWREARLD T VEAGRRSRG S  XXXXXXXXX  R S GSWHGAREGSA GPGLMMQFRNLSTGDVDVLVP SEKPRGRAS ESGGG PVESRAPAATFEPHSSNLGLKITQTFAAASWPWAPK S EARA   XXXXXXXXXXXXX+G+STAVGAGDSAGARGG    XX   XXXXXXXXXXXXXXX  GD+CGSDARDGESAAA  GSAAVD  XXXXXXXXXXXX   YSAFVGAFEGVI SMGSSGGARDGQTVVPSLVLDEDXXXXXXXXXXXXXXG LPSDTVTDVCGLDGGRP AA WGGSGEVGGEVAAGGRAVPRRSVGALVCRRCGGTAEGPQNSTCTC VPELGTGGAEP DRDE Q TAGLSKLKGVFKSFNGGV+VARQMLDTAVRQNVAHNVPP VAARSS GGDRRPSLSSSV  EA GSSXXXXXXXXXXXXXX       XXX                DATAGDRTGGD VAAAAVIVS ASED    GDGA    XXXXXXXXX   XXXXXXXX       +PDG DDAG VA GDGDDPS+ G  +               XXXXXXXXX      ATGA AVVAA IL V ED++ AGEEAGAEKEEAEIRT  SGENDADGGG LD+ S SPAEDDGGDADS PGG  +ATAAGAPEAFIEHAAGV SDD TDVAAEARAG
Sbjct:  262 QEEYMSQMQDTTSAKTEAEKERCRVLQGLQAEHAAARAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQARLEVELAAALNALAAARREEGESRGVAEQLRAEAGXXXXXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAAVAKVAELSEQKRLLVREVKLSRRSLAEASSVNRRLVRAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------PSDDGACDSGKAVGTAAPVAAARAAGERAVSDSSTNGGGAGLAANPIPLLRPGTREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---EEWREARLDGTAVEAGRRSRGGSXXXXXXXXXXXVGRGSTGSWHGAREGSATGPGLMMQFRNLSTGDVDVLVPPSEKPRGRASTESGGGPPVESRAPAATFEPHSSNLGLKITQTFAAASWPWAPKSSTEARAXXXXXXXXXXXXXXXXSGSSTAVGAGDSAGARGGXXXXXXXXXXXXXXXXXXXXXXXXGSGDSCGSDARDGESAAATAGSAAVDXXXXXXXXXXXXXXXXXYSAFVGAFEGVICSMGSSGGARDGQTVVPSLVLDEDXXXXXXXXXXXXXXGQLPSDTVTDVCGLDGGRPLAARWGGSGEVGGEVAAGGRAVPRRSVGALVCRRCGGTAEGPQNSTCTCSVPELGTGGAEPLDRDETQATAGLSKLKGVFKSFNGGVQVARQMLDTAVRQNVAHNVPPAVAARSSLGGDRRPSLSSSVRVEAAGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDATAGDRTGGDSVAAAAVIVSPASEDNTVRGDGAGDGNXXXXXXXXXTAVXXXXXXXXTADAITDNPDGGDDAGYVAPGDGDDPSDCGSNSSGAATPAAVSTISGTXXXXXXXXXSDGDGVATGAPAVVAAGILAVGEDDENAGEEAGAEKEEAEIRTGGSGENDADGGGVLDN-SPSPAEDDGGDADSNPGGDIKATAAGAPEAFIEHAAGVGSDDATDVAAEARAG 1351
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1059.547.1 vs. uniprot
Match: D8LCP7_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP7_ECTSI)

HSP 1 Score: 531 bits (1367), Expect = 1.760e-163
Identity = 439/524 (83.78%), Postives = 441/524 (84.16%), Query Frame = 1 
Query:    1 QEEYMSQMQDTTLAKTEAEKERCRVLQGLQAEHAAARAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQTRLEVELTAALSALAAARREGGESRGVAEQLRAEAGEASXXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAAVAKAAELSEQKRLLVREVKLSRRALAEATSVNRRLARAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAADKGGCGTAAA---VPSPSEDGACDSEKAVGTAAPVAAARAAGERAVSDSSTDGGGAGLAANPTPLLRPETQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGRGR-------REEWREARLDCTLVEAGRRSRGSSVGXXXXXXXXXXRESAGSWHGAREGSAPGPGLMMQFRNLSTGDVDVLVPSSEKPRGRASIESGGGDPVESRAPAATFEPHSSNLGLKITQTFAAASWP 1542
            QEEYMSQMQDTT AKTEAEKERCRVLQGLQAEHAA RAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQTRLEVEL AALSALAAAR E GESRGVAEQL        XXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAA AKAAELSEQKRLLVREVKLSRR+LAEATSVNRRLARAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                  PSPSEDGACDS KAVG AAPV AARAAGERAVSDSSTDG                   XXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXX             REEWREARLD T +EAGRRSRG SV XXXXXXXXXX  SAGSWHGAREGSA GPGLMMQFRNLSTGDVDVLVP SEKPRGRAS ESGGG PVESRAPAATFEPHSSNLGLKITQTFAAASWP
Sbjct:  257 QEEYMSQMQDTTSAKTEAEKERCRVLQGLQAEHAAVRAAARDGLEQARALFRDEELPPEDAESLPLPALLARVRAVASDRRCRQTRLEVELAAALSALAAARNEEGESRGVAEQLXXXXXXXXXXXXXXXXXXXXXXEEATRERGLRATAEASLEACKDRLEAIMVDVEQGQVNLGIMAGERRAAAAKAAELSEQKRLLVREVKLSRRSLAEATSVNRRLARAYESLEQSLRTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPSPSEDGACDSGKAVGLAAPVEAARAAGERAVSDSSTDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPLVEGXXXXXXXXXXXXXXXXXXXXXXXXXXREEWREARLDGTAIEAGRRSRGGSVXXXXXXXXXXXXRSAGSWHGAREGSATGPGLMMQFRNLSTGDVDVLVPPSEKPRGRASTESGGGGPVESRAPAATFEPHSSNLGLKITQTFAAASWP 780
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1059.547.1 vs. uniprot
Match: A0A835Z0T3_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T3_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.070e-10
Identity = 42/71 (59.15%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:  478 RLEAIMVDVEQGQVNLGIMAGERRAAVAKAAELSEQKRLLVREVKLSRRALAEATSVNRRLARAYESLEQS 690
            +L   ++  EQGQVNLGI+AGERRA   +AA L++QKR+LVREV+ +R ALA+A  VN RLA AYE+L  S
Sbjct:  370 QLREALLQAEQGQVNLGILAGERRALEGRAAALADQKRVLVREVRAARAALADAQRVNARLAAAYEALAAS 440
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1059.547.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHM0_9PHAE0.000e+083.18PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCP7_ECTSI1.760e-16383.78PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835Z0T3_9STRA9.070e-1059.15PH domain-containing protein n=1 Tax=Tribonema min... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1059contigEcto-sp13_S_contig1059:10372..18830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score537.3
Seed ortholog evalue1.7e-149
Seed eggNOG ortholog2880.D8LCP7
Model size4845
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.Pleckstrin homology domain.
EggNOG OGs2E9MN@1,2SFYW@2759
Ec32 ortholog descriptionPleckstrin homology-like domain
Ec32 orthologEc-03_002090.1
Cds size3411
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1059.547.1prot_Ecto-sp13_S_contig1059.547.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1059 11794..18818 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462540.1839383-UTR-Ecto-sp13_S_contig1059:10371..117931681462540.1839383-UTR-Ecto-sp13_S_contig1059:10371..11793Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1059 10372..11793 -
1681462540.2739336-UTR-Ecto-sp13_S_contig1059:18818..188301681462540.2739336-UTR-Ecto-sp13_S_contig1059:18818..18830Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1059 18819..18830 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462540.1955874-CDS-Ecto-sp13_S_contig1059:11793..128761681462540.1955874-CDS-Ecto-sp13_S_contig1059:11793..12876Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 11794..12876 -
1681462540.2050316-CDS-Ecto-sp13_S_contig1059:13537..136511681462540.2050316-CDS-Ecto-sp13_S_contig1059:13537..13651Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 13538..13651 -
1681462540.2145927-CDS-Ecto-sp13_S_contig1059:14156..149211681462540.2145927-CDS-Ecto-sp13_S_contig1059:14156..14921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 14157..14921 -
1681462540.224073-CDS-Ecto-sp13_S_contig1059:15132..159961681462540.224073-CDS-Ecto-sp13_S_contig1059:15132..15996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 15133..15996 -
1681462540.2336102-CDS-Ecto-sp13_S_contig1059:16456..165671681462540.2336102-CDS-Ecto-sp13_S_contig1059:16456..16567Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 16457..16567 -
1681462540.2432988-CDS-Ecto-sp13_S_contig1059:16845..169571681462540.2432988-CDS-Ecto-sp13_S_contig1059:16845..16957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 16846..16957 -
1681462540.2526999-CDS-Ecto-sp13_S_contig1059:17965..182011681462540.2526999-CDS-Ecto-sp13_S_contig1059:17965..18201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 17966..18201 -
1681462540.2659247-CDS-Ecto-sp13_S_contig1059:18692..188181681462540.2659247-CDS-Ecto-sp13_S_contig1059:18692..18818Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1059 18693..18818 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1059.547.1

>prot_Ecto-sp13_S_contig1059.547.1 ID=prot_Ecto-sp13_S_contig1059.547.1|Name=mRNA_Ecto-sp13_S_contig1059.547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1137bp
MSQMQDTTLAKTEAEKERCRVLQGLQAEHAAARAAARDGLEQARALFRDE
ELPPEDAESLPLPALLARVRAVASDRRCRQTRLEVELTAALSALAAARRE
GGESRGVAEQLRAEAGEASARATNAEARVERAEEEATRERGLRATAEASL
EACKDRLEAIMVDVEQGQVNLGIMAGERRAAVAKAAELSEQKRLLVREVK
LSRRALAEATSVNRRLARAYESLEQSLRTTTSSPVPSSSSFSEEAPPPPS
TTTATAATSAASADAAAAAAVGAAADKGGCGTAAAVPSPSEDGACDSEKA
VGTAAPVAAARAAGERAVSDSSTDGGGAGLAANPTPLLRPETQEEEAAGA
AAAAAAAAGAPVSPVVEGLLGGGGGGGARGGGVGGRGRREEWREARLDCT
LVEAGRRSRGSSVGGGGGKGGGGGRESAGSWHGAREGSAPGPGLMMQFRN
LSTGDVDVLVPSSEKPRGRASIESGGGDPVESRAPAATFEPHSSNLGLKI
TQTFAAASWPWAPKPSIEARAATAAAATPAAGTGTAATGNSTAVGAGDSA
GARGGRSGSGSSIISGGSAGGGVGEATAGGSGDNCGSDARDGESAAAVTG
SAAVDAAAGAGSGGGGGGGYSAFVGAFEGVISSMGSSGGARDGQTVVPSL
VLDEDDDDNGLSGDSGGGGGPLPSDTVTDVCGLDGGRPPAASWGGSGEVG
GEVAAGGRAVPRRSVGALVCRRCGGTAEGPQNSTCTCLVPELGTGGAEPF
DRDENQTTAGLSKLKGVFKSFNGGVKVARQMLDTAVRQNVAHNVPPVVAA
RSSSGGDRRPSLSSSVHAEATGSSGSDAAAAAATDAAAPARASGVSGVDS
TDATAGDRTGGDGVAAAAVIVSRASEDKAFSGDGAGNGTNDGAAAGAATA
AGAGAAGAATAVAIAVDPDGSDDAGSVASGDGDDPSEGGGKNGGAATRAA
VSTISDTPDDGDDAGGSDGDRAATGATAVVAASILPVSEDEDIAGEEAGA
EKEEAEIRTSRSGENDADGGGTLDDYSRSPAEDDGGDADSTPGGGTEATA
AGAPEAFIEHAAGVVSDDGTDVAAEARAGAVTSLPAAAAAAVVVPAEAAT
ASAEKREEGEEGQDVATQQRPKPKKSGRRGRRERRR*
back to top

mRNA from alignment at Ecto-sp13_S_contig1059:10372..18830-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1059.547.1 ID=mRNA_Ecto-sp13_S_contig1059.547.1|Name=mRNA_Ecto-sp13_S_contig1059.547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1059:10372..18830- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGAAGAGTACATGTCCCAGATGCAGGACACCACGCTCGCAAAGACGGA
GGCGGAGAAGGAGCGGTGTCGGGTGCTGCAGGGCCTCCAGGCGGAGCACG
CGGCCGCGAGAGCGGCCGCCAGGGATGGACTCGAGCAGGTGTACCTTTTT
CTTTTGTCAAAAGAGTTTCGTCGCCATGTTATTGTAGCCTTTTTTTCTTT
TTTTCTTTTTTGGCTTTGCTTTGTCTTGGCAGATCGGAGTGGCCTCGAGC
TGGTGGAAATGGCGTAGATGTGTATGGCTTTTTTTTTGGTCCATAGATTG
TCGTCGCGATGTGTTTTTTAGTCCTCTCTTGCTTTTTTTTATTGTTGCAA
GTCTTGGCAGATCAGAGTGCTACGTGCGTTACATGTGGGGCAGTGAAAAT
GACATGTTGTTCAGCACGCGCGGGAAAATACGATCTAAAAATGTACGCAG
GTACCCTTTTGTGTATGTACTGCTGCTGTTTGAGACGTTTAAGAACCCGT
TCGGAGGGGAGGGTTACCTATTGAAGGAGAGCTATGGCGGTGCGGTGGTG
GGCCCGGTTTAGCGGCCCCAAGTGTCAAGAGGGAATATGACCGCTACGTA
TTCAACCAACTCGAAATTTTACCGCACAGGCGCGAGCGCTATTCCGGGAC
GAAGAGTTGCCGCCGGAAGACGCGGAGTCTCTCCCGCTGCCCGCCCTGCT
GGCCAGGGTGCGGGCCGTGGCGTCCGATCGACGGTGCCGGCAGACTCGGC
TGGAGGTGGAGCTCACCGCGGCGCTCAGCGCTCTCGCGGCCGCCAGGAGG
GAGGGGGGGGAGAGCCGGGGCGTCGCGGAACAGCTGCGTGCGGAGGCGGG
GGAAGCGTCGGCAAGGTGCGGCGGCGGGCGGCCAACAAATATCTTCCTGG
TGTTAGATATTACACAGCTCGCATTATTGTCAAATGAAAAGCATGGGGCC
TCACACACGTTTCTAGCATTGATTCGGGTGGGTTGAGTCATGTGCGTCCC
GAAAACCGAACATGAACGAATACCCAAAAGACAACAAAACGCACCCAGCT
GTAGTCCAGATGGGTGTACGCGGTGGCCTTGGTTTGGCGTTTTTTTTTTT
TTTTTCATTCACACAGTTATTCTGTGTTTGTCTTCAGTTCAGATCAGCGC
GCACAGCGCTTGTGCCGTTTACTCCAACCCGTGCTCACACAGAAGGGTTC
CCCCCTACCCACCCCTACTGCGGTGCGTTGCGTTCGATTTTTTAATGTGT
CGCCACGTGTTTTGTAGGGACGAGCTCGTCGTTTTGTTCGTGTACATGCG
TTTGGATGGGCCCTACACACGTTTCTAACATAGATTGGGGTGGTTGAGTC
ATATGCGTCCCCAAAACCGAACATGAACGAATACCCAAACCCAAAACGCA
CCCAACTATAACCTAGACGGGTGCATGCGGTGGCCCTGGTCTGGCGTGTG
CTTTTATTCATATTCATGGAGTACATTCATTAAGGTATTTTTGTTTGCCT
TCGTTTCAGATCAGCGCTCACAGCACTTGTGCCGTTTACTCCAAGCCGTG
GTCACACAGGAGGGTTCCCCCATACCCACCCCTCCCACGGTGCTTTGCTT
TCGATTTTAAATGTAGCGCCGCAGTTTTGTAGGGACCAACTCGTCGTTTT
GTTCGTGTACATGCGTTTGGATGATAGAGGGCATTTTGCTCGATCATCAT
CGTGTCGCTTATGCTCCCGTAACTCAAGGCGTTCCTGGCGTGTATTGGCT
GCCATGTTTTCGTACCGCTTTTTTCAATCGTGGCGTCGGCCTCATCTTGC
GTATGCGCTACACCGCGTGTTAATGCGCGCACGTCTGCGCTGTCGTGCTA
TCTGTTGTCGTCATGGATGGCAGAGCCACGAATGCCGAAGCTCGAGTTGA
GCGTGCGGAGGAGGAAGCAACTCGCGAGAGGGGGCTCCGTGCGACCGCAG
AGGCATCGCTAGAGGCATGCAAGGACCGCCTCGAGGTGCGCTTTGTGGCT
GCAACCATCACGTGGCGCTCTTCGGTTGGCTTTTGTTTCTTTTGCGGGCG
CCGTCGGGAATACGTCGTATCGCTCGCTGTAGTTGTCGTTCGTTAGTACC
TGTTTTGTGTTGGTGTTCAAGGCTCACGCTGAGCTGGTGTTTAGCTAGAA
TCAGCCATATACATGCTCTCCCCCTCCGCCTTCTCGTCGTCGACCTCACC
TCTAATGTACCCCTCCTCACCTGTTTTGCTCGGCCGTGATCGCCGAACGA
TCCTGTTCAATAGGCGATCATGGTGGACGTGGAGCAGGGTCAGGTGAACC
TGGGCATCATGGCGGGGGAGAGGCGCGCGGCGGTCGCGAAGGCCGCCGAG
CTCTCCGAGCAGAAGCGGTTGCTGGTGAGCCTGCTCGGCTGCCGTTGTTT
TGGTTGTCACGTGATTGTTGCTATGTTTTTGTTGTAACGGTTGTTGTTGT
AGTTGTTGTTGTTCTGCTCTTGGTGGTGCCGCTGTTCTTCGTGGCTAAAG
CTCTGGCAGGTGTATGGCAAGAAGAAACGCGAAACAAGACAGCAGTATCG
CCCTGTTTGGGAATGTGAGGGCCATCTGAACGTTGCACATTTGCGTCCAA
GTGCACCTTTTCGTAACGGACTGATGTTGGAAAAGATGTTTACCGAACAC
CGCCGATATTCCTCCAAATTGGTTCTCGCAACGTGCCCGAAAACACACCA
TTCCTACTACCAGCAAAACGCGACGAAGCCAAGGGGCCTTGTTGTACGGT
GTTCCCCCCCCCCTCCCCAACACACACGCCTTACGCACACCATTGCATCT
CTGTTGCCTTGACCGCCGTGCCTCGCCGCGAAAGGTACGGGAGGTGAAGT
TGTCCCGGCGCGCCCTGGCGGAGGCGACCTCGGTGAACCGGCGCCTGGCG
CGGGCGTACGAGTCGCTGGAGCAGTCGCTGCGGACAACGACGTCCTCGCC
GGTGCCGTCGTCGTCTTCGTTCTCGGAGGAAGCCCCTCCGCCGCCGTCGA
CAACCACAGCAACAGCAGCAACGTCTGCTGCAAGCGCGGACGCCGCCGCT
GCTGCCGCTGTTGGCGCAGCCGCAGACAAAGGCGGTTGTGGTACCGCTGC
TGCCGTCCCCTCCCCCTCCGAAGACGGCGCGTGCGATTCGGAGAAGGCCG
TAGGAACGGCGGCACCGGTGGCAGCAGCGAGAGCTGCGGGGGAGAGGGCG
GTTTCGGATTCCAGCACTGACGGCGGGGGCGCTGGTCTCGCAGCCAACCC
CACCCCGTTGTTGCGGCCGGAGACCCAGGAGGAGGAGGCTGCTGGAGCGG
CGGCGGCGGCGGCGGCGGCGGCGGGTGCTCCGGTGTCCCCAGTCGTGGAA
GGCCTGCTCGGTGGCGGCGGCGGCGGAGGGGCAAGAGGAGGAGGGGTTGG
GGGAAGAGGAAGGAGAGAAGAGTGGCGGGAGGCGCGGCTCGATTGCACCC
TCGTTGAGGCCGGTCGTCGAAGTCGCGGCAGCAGCGTGGGAGGAGGAGGA
GGCAAAGGAGGGGGAGGAGGGAGGGAGAGTGCGGGCAGCTGGCACGGGGC
ACGGGAGGGCTCGGCTCCGGGCCCGGGACTGATGATGCAGTTCAGGAACC
TGTCCACCGGGGACGTGGACGTGCTTGTCCCCTCAAGCGAGAAGCCGCGG
GGGCGAGCGTCGATAGAGAGCGGCGGCGGGGATCCCGTCGAATCACGGGT
GAGTGGAAGCTGAGCGCGTGGTGTTGGTTGGTTGGTTTGGAGGGGTGACT
CCTCCGTGCTTCCCCTCGTTTTGGGGCGAAGGCCTTCATTTTGTTGGGCG
TGGTGATCGTAGTCTGGTAAATTCTCACCGCGGCGTACATGTACGTGTGT
GTTTTCAAGTACGCGCTCCCCGCTGCGTGATGGAATTAATTTACTGCCAA
TCCTTTCAGGCCCCGGCTGCTACCTTCGAGCCGCACTCCTCCAACTTGGG
CCTGAAGATCACTCAGACGTTCGCGGCGGCGAGCTGGCCCTGGGCGCCCA
AGCCCAGCATCGAGGCCCGCGCTGCCACCGCCGCAGCTGCTACTCCTGCT
GCGGGCACCGGTACGGCTGCAACTGGGAACTCGACTGCTGTTGGGGCTGG
CGATAGCGCCGGCGCGAGAGGCGGAAGAAGCGGCAGCGGTAGTAGCATCA
TCAGCGGTGGGTCCGCGGGAGGCGGCGTTGGAGAGGCCACTGCCGGAGGC
AGCGGGGACAACTGTGGTTCCGATGCCCGGGACGGAGAGTCCGCTGCTGC
TGTTACCGGCTCTGCTGCTGTCGACGCCGCTGCAGGAGCTGGGAGCGGGG
GCGGGGGCGGTGGCGGCTATTCGGCGTTTGTCGGGGCCTTTGAGGGCGTT
ATTTCTTCCATGGGAAGCAGCGGCGGCGCTAGAGACGGACAGACGGTCGT
CCCTTCCCTTGTTCTTGACGAAGACGACGACGACAATGGACTTAGCGGCG
ACAGCGGCGGCGGCGGCGGGCCGCTACCCTCTGATACCGTTACCGATGTT
TGTGGCTTGGATGGTGGGAGACCACCCGCAGCTAGTTGGGGCGGTAGTGG
CGAGGTTGGCGGGGAGGTTGCTGCTGGCGGACGAGCGGTCCCTCGAAGAA
GCGTGGGGGCGTTGGTGTGCCGCAGGTGCGGGGGCACGGCGGAAGGCCCC
CAGAACAGCACCTGCACGTGCTTGGTAAGGGCAACAGGCGGCTTGTCTCG
GGTTGTCACGACAACCGCTCTTGTGTGCGTCTTGTGTTTTTGACGAGGCT
TGGTCAAGGTGAAGCGTGTGAGGGGCTGGGGGCGGTGGCGCATGATGCAT
TCGGATCTGTTCCTTGCTCTGATTTCGGTCTGTGCTTAGGTGTGAGTGTT
GAGCCCCTAAGCCTTTCGGGGTAGGTGTAGGTTGTCGTTTGAGTGTTCGT
GGTTGCCTTTTGAGTATGCGTTCTTTCTGACTTGGGGAGTGTTCGACCCC
CCCTTGCACGAGGTACTCTCTATCGACAAGCAAGAGCTAAATCCATGCGT
TATTCCGAACACCTACCGCACTGGTCGGCTATGTCATTTGTCCTCCCCCC
CCAAGCTGCGAAACCGCTCCTCTGAGCACTTTCCGCGCATTATTTGTTTT
GCGAGCACCATGCCAACTCGTCCTCCTTCCATCACCGTCGTTGTGGGCGG
GCCTTGTGCCGCGCCACCATCTGGAACAGGTGCCGGAGTTGGGCACGGGC
GGCGCGGAACCGTTCGATAGGGATGAGAATCAGACCACCGCCGGGCTCTC
GAAGCTAAAGGGGGTCTTCAAGTCCTTCAACGGGGGAGTGAAGGTAATTA
ACTTCGCGTGAATGTGTTCTCCAACCGAAGTTGCGGCACACAGCTGCGGG
TCGGCCACCGGCTGTTGTGATCGGCACTTCGTATTCCCATGATCTTGTTT
ACTTTCACCGTTCCTGCACCTTTTGATGCGGCCGTCCAGAGTAAGAAAGT
CAAGATATAGGGCGGGGGGAGGGGGGTCACGTGTGCTGAATTTGGGAAAA
CGTCTTGACGTGGTTTCGCGTTCAACATCTGTCCACGTAATGCTGCCGAG
GAGAAGCCGATATTCCTTGTTTTTTTTTTCGTCGCAGGGGAACCACGTGG
TTGTTGTCACACACGCCAACACGACAAATCCGCTTGGCTCGAGCGGAAGA
CTGCTAATATGTGGCTTAGAAAGGACCGAACCGCAACCTGCTTGTTCCAC
TAGTATGTAGCTCTTGTGGATACACGGCGCGTGGTTGTGTGCGGTTACGC
TTTGAACTACAACGAGCTCCAGTCACGCCATCATCGTTGGAATGAGCGTG
CATATCACAGCTCGCTTTGTTTTCCAGCCTGTGTCCCTCGGAGCAAATCG
GAGCTACCATCCTGTAGTCTGGCGTCTGCCTGTGAGCGGTGAACGCATGG
CCCTTGCAATCCTTCGGTTTTCATTTTACGGACCCCCCGTTGGTTGTGGA
TCAGGTGGCGCGGCAGATGCTGGACACAGCTGTGCGACAGAACGTGGCGC
ACAATGTGCCCCCGGTGGTGGCCGCGCGGTCGTCGTCCGGAGGTGACCGT
CGCCCGAGCCTTTCGTCTTCGGTGCATGCCGAAGCTACGGGTAGTAGTGG
CAGTGATGCTGCTGCTGCTGCTGCTACTGATGCTGCTGCTCCAGCTCGAG
CGTCTGGGGTATCCGGTGTTGATAGCACTGATGCTACCGCTGGAGATCGT
ACTGGCGGTGATGGTGTTGCGGCTGCTGCTGTCATTGTTTCTCGTGCTTC
TGAGGACAAAGCTTTTAGCGGTGATGGTGCTGGTAATGGTACCAACGACG
GTGCTGCTGCCGGTGCTGCCACTGCCGCTGGTGCTGGTGCTGCTGGTGCT
GCCACTGCTGTTGCCATTGCTGTTGATCCCGATGGTAGCGATGACGCCGG
TTCTGTTGCTTCCGGTGATGGGGATGACCCCAGTGAAGGCGGCGGCAAGA
ACGGCGGTGCTGCCACTAGGGCTGCTGTTTCCACCATTTCTGATACTCCC
GACGATGGTGATGATGCCGGTGGTAGTGACGGCGATCGTGCTGCCACGGG
TGCTACCGCTGTGGTCGCCGCCAGCATCCTTCCAGTCAGTGAGGACGAGG
ACATCGCTGGAGAGGAAGCGGGAGCGGAGAAAGAAGAGGCGGAGATAAGG
ACAAGCAGATCGGGCGAGAACGACGCCGATGGCGGTGGTACCCTTGATGA
TTATTCCCGTAGTCCCGCCGAAGACGACGGGGGTGACGCGGACTCGACAC
CTGGAGGGGGTACCGAAGCCACCGCGGCGGGAGCTCCGGAAGCGTTCATC
GAGCATGCTGCCGGTGTTGTCAGTGATGATGGCACCGACGTTGCTGCGGA
AGCACGAGCTGGAGCAGTAACATCGCTACCAGCAGCGGCGGCAGCAGCAG
TAGTGGTACCAGCAGAAGCCGCGACAGCTTCCGCAGAAAAGCGCGAAGAA
GGAGAAGAAGGACAAGATGTGGCCACGCAACAGCGGCCCAAGCCGAAAAA
ATCGGGGAGACGAGGGCGTCGAGAACGACGGCGATGACGAGGAAAGCTGC
GCCAAGGGTGGCCAGACTTCTGGCGAGCTCGAGTGTCCGATGCCCGCGTC
GCGTAAGAGGACAGAAGTAGGTGTTGCTGCGGTCTGTTGAGCGGTGGGTG
CCCAAGGTAGGTAGAAGCACGAACAATGCGGCCCAATTGGGGTCCTTTTA
CTTGTTGTTGGTGCTAGCCGCAAGCCGTTGGTACTATGTAGAGTCTTTTG
GTGTTTGCATTCGGTATTTCTCGTTGATCCCGGCGACAGTGGATGAAAAA
CTTGGACGGGGGACACGGTAGCATTTCGTCTTATTGGTGATTTGATGAGG
ATTTTGCGTGAAAAATTATTCGGGGTTTCGTGGTCACATTTCTGGTGTTG
TTTTGGCGTAGTTGGCACGCGATGGGCGGCCTGATTTTGTGTTCAAGTTG
CTTTTTATATAAAGAGAGTTCTGGCCTCCGCTTTCCCATAGGGTTCACCT
ATTGAGTGTACATACAAATATAGTGAAAGTAGAAGCCCCCACTCTGCAGA
CGCCAAACCGGAACCACAGGGACCGACGAGCGGATCGCATTGTGCGGTGC
CCCTGGATGAAAACACATGGGAGTTCTTTGATAGATGCTTGCAAGAGAGC
AAGTCGTGGATCCTTGCACACACTTAGTATCGAGCAGCTAGGGGCTGGAT
AAACGTCTTGGTGTGGGGTGGAGGGTGTTCGAGGCTAAGTCACACCTTTT
TAGAGATCGCAGGTGGATGCCTTCGAACCACGTACGGGTCGTCGACGCCC
GTCACAACTAGGCAGCCCTTCAGTTTTTGGTCGTGAACGTGGCTGATACA
TGCTCCTGTGATAAACGTGTACGTCCGCCGCACGCACCTCTTCTTCAGGT
AGCGATTGTGGCGCCGAACTATGTAGGATTCCCAAGGAATAGTTAATGCG
GGATGTCAGGATTATATTACTGTAGGTTGATGTCAGCTCTGCGTCTGTGT
CCGAGGATACAGTCCGGCACCTTCTTGTGCGGTTTGGAAACGGTAGACGC
GAGGGTTGGTTGGCATGCAGTGCTCGGGGGGTAGCAGCAGCAGCACCAAT
CTCGGTAGTGGTTCTACTCGTGGTGACGGACGTCTGCGTAGATAGGTCAA
GGGCCCAGCCCAGCGGCTAGAACAGGAGTCGGTACGGTGCAGAACGAGCG
GAAAGATGGCACCACCTTCTTCGAAGCGTGGCCGGCTGTATGTTGAAAGG
AAGGAACGATTTGCCTCCGGCCATGTGGCGACGTTGAAAATGAAGCCAAG
GATGTGTGCCCTCGTGTGCGCTCTCGTCGCGCACGATCGGCCTCAGTTAA
ATGTTGCCTGCGCCGCAGAGGGTGGGCCCTGTACCGAACGGGGTATGATG
GTGCTTGAGAGCTCGCTCCCTCACCAGCCGACATGGCGAGACAATGGCGC
GAAGCGACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1059:10372..18830-

>mRNA_Ecto-sp13_S_contig1059.547.1 ID=mRNA_Ecto-sp13_S_contig1059.547.1|Name=mRNA_Ecto-sp13_S_contig1059.547.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1059:10372..18830- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCCAGATGCAGGACACCACGCTCGCAAAGACGGAGGCGGAGAAGGA
GCGGTGTCGGGTGCTGCAGGGCCTCCAGGCGGAGCACGCGGCCGCGAGAG
CGGCCGCCAGGGATGGACTCGAGCAGGCGCGAGCGCTATTCCGGGACGAA
GAGTTGCCGCCGGAAGACGCGGAGTCTCTCCCGCTGCCCGCCCTGCTGGC
CAGGGTGCGGGCCGTGGCGTCCGATCGACGGTGCCGGCAGACTCGGCTGG
AGGTGGAGCTCACCGCGGCGCTCAGCGCTCTCGCGGCCGCCAGGAGGGAG
GGGGGGGAGAGCCGGGGCGTCGCGGAACAGCTGCGTGCGGAGGCGGGGGA
AGCGTCGGCAAGAGCCACGAATGCCGAAGCTCGAGTTGAGCGTGCGGAGG
AGGAAGCAACTCGCGAGAGGGGGCTCCGTGCGACCGCAGAGGCATCGCTA
GAGGCATGCAAGGACCGCCTCGAGGCGATCATGGTGGACGTGGAGCAGGG
TCAGGTGAACCTGGGCATCATGGCGGGGGAGAGGCGCGCGGCGGTCGCGA
AGGCCGCCGAGCTCTCCGAGCAGAAGCGGTTGCTGGTACGGGAGGTGAAG
TTGTCCCGGCGCGCCCTGGCGGAGGCGACCTCGGTGAACCGGCGCCTGGC
GCGGGCGTACGAGTCGCTGGAGCAGTCGCTGCGGACAACGACGTCCTCGC
CGGTGCCGTCGTCGTCTTCGTTCTCGGAGGAAGCCCCTCCGCCGCCGTCG
ACAACCACAGCAACAGCAGCAACGTCTGCTGCAAGCGCGGACGCCGCCGC
TGCTGCCGCTGTTGGCGCAGCCGCAGACAAAGGCGGTTGTGGTACCGCTG
CTGCCGTCCCCTCCCCCTCCGAAGACGGCGCGTGCGATTCGGAGAAGGCC
GTAGGAACGGCGGCACCGGTGGCAGCAGCGAGAGCTGCGGGGGAGAGGGC
GGTTTCGGATTCCAGCACTGACGGCGGGGGCGCTGGTCTCGCAGCCAACC
CCACCCCGTTGTTGCGGCCGGAGACCCAGGAGGAGGAGGCTGCTGGAGCG
GCGGCGGCGGCGGCGGCGGCGGCGGGTGCTCCGGTGTCCCCAGTCGTGGA
AGGCCTGCTCGGTGGCGGCGGCGGCGGAGGGGCAAGAGGAGGAGGGGTTG
GGGGAAGAGGAAGGAGAGAAGAGTGGCGGGAGGCGCGGCTCGATTGCACC
CTCGTTGAGGCCGGTCGTCGAAGTCGCGGCAGCAGCGTGGGAGGAGGAGG
AGGCAAAGGAGGGGGAGGAGGGAGGGAGAGTGCGGGCAGCTGGCACGGGG
CACGGGAGGGCTCGGCTCCGGGCCCGGGACTGATGATGCAGTTCAGGAAC
CTGTCCACCGGGGACGTGGACGTGCTTGTCCCCTCAAGCGAGAAGCCGCG
GGGGCGAGCGTCGATAGAGAGCGGCGGCGGGGATCCCGTCGAATCACGGG
CCCCGGCTGCTACCTTCGAGCCGCACTCCTCCAACTTGGGCCTGAAGATC
ACTCAGACGTTCGCGGCGGCGAGCTGGCCCTGGGCGCCCAAGCCCAGCAT
CGAGGCCCGCGCTGCCACCGCCGCAGCTGCTACTCCTGCTGCGGGCACCG
GTACGGCTGCAACTGGGAACTCGACTGCTGTTGGGGCTGGCGATAGCGCC
GGCGCGAGAGGCGGAAGAAGCGGCAGCGGTAGTAGCATCATCAGCGGTGG
GTCCGCGGGAGGCGGCGTTGGAGAGGCCACTGCCGGAGGCAGCGGGGACA
ACTGTGGTTCCGATGCCCGGGACGGAGAGTCCGCTGCTGCTGTTACCGGC
TCTGCTGCTGTCGACGCCGCTGCAGGAGCTGGGAGCGGGGGCGGGGGCGG
TGGCGGCTATTCGGCGTTTGTCGGGGCCTTTGAGGGCGTTATTTCTTCCA
TGGGAAGCAGCGGCGGCGCTAGAGACGGACAGACGGTCGTCCCTTCCCTT
GTTCTTGACGAAGACGACGACGACAATGGACTTAGCGGCGACAGCGGCGG
CGGCGGCGGGCCGCTACCCTCTGATACCGTTACCGATGTTTGTGGCTTGG
ATGGTGGGAGACCACCCGCAGCTAGTTGGGGCGGTAGTGGCGAGGTTGGC
GGGGAGGTTGCTGCTGGCGGACGAGCGGTCCCTCGAAGAAGCGTGGGGGC
GTTGGTGTGCCGCAGGTGCGGGGGCACGGCGGAAGGCCCCCAGAACAGCA
CCTGCACGTGCTTGGTGCCGGAGTTGGGCACGGGCGGCGCGGAACCGTTC
GATAGGGATGAGAATCAGACCACCGCCGGGCTCTCGAAGCTAAAGGGGGT
CTTCAAGTCCTTCAACGGGGGAGTGAAGGTGGCGCGGCAGATGCTGGACA
CAGCTGTGCGACAGAACGTGGCGCACAATGTGCCCCCGGTGGTGGCCGCG
CGGTCGTCGTCCGGAGGTGACCGTCGCCCGAGCCTTTCGTCTTCGGTGCA
TGCCGAAGCTACGGGTAGTAGTGGCAGTGATGCTGCTGCTGCTGCTGCTA
CTGATGCTGCTGCTCCAGCTCGAGCGTCTGGGGTATCCGGTGTTGATAGC
ACTGATGCTACCGCTGGAGATCGTACTGGCGGTGATGGTGTTGCGGCTGC
TGCTGTCATTGTTTCTCGTGCTTCTGAGGACAAAGCTTTTAGCGGTGATG
GTGCTGGTAATGGTACCAACGACGGTGCTGCTGCCGGTGCTGCCACTGCC
GCTGGTGCTGGTGCTGCTGGTGCTGCCACTGCTGTTGCCATTGCTGTTGA
TCCCGATGGTAGCGATGACGCCGGTTCTGTTGCTTCCGGTGATGGGGATG
ACCCCAGTGAAGGCGGCGGCAAGAACGGCGGTGCTGCCACTAGGGCTGCT
GTTTCCACCATTTCTGATACTCCCGACGATGGTGATGATGCCGGTGGTAG
TGACGGCGATCGTGCTGCCACGGGTGCTACCGCTGTGGTCGCCGCCAGCA
TCCTTCCAGTCAGTGAGGACGAGGACATCGCTGGAGAGGAAGCGGGAGCG
GAGAAAGAAGAGGCGGAGATAAGGACAAGCAGATCGGGCGAGAACGACGC
CGATGGCGGTGGTACCCTTGATGATTATTCCCGTAGTCCCGCCGAAGACG
ACGGGGGTGACGCGGACTCGACACCTGGAGGGGGTACCGAAGCCACCGCG
GCGGGAGCTCCGGAAGCGTTCATCGAGCATGCTGCCGGTGTTGTCAGTGA
TGATGGCACCGACGTTGCTGCGGAAGCACGAGCTGGAGCAGTAACATCGC
TACCAGCAGCGGCGGCAGCAGCAGTAGTGGTACCAGCAGAAGCCGCGACA
GCTTCCGCAGAAAAGCGCGAAGAAGGAGAAGAAGGACAAGATGTGGCCAC
GCAACAGCGGCCCAAGCCGAAAAAATCGGGGAGACGAGGGCGTCGAGAAC
GACGGCGATGA
back to top