mRNA_Ecto-sp13_S_contig10579.536.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10579.536.1
Unique NamemRNA_Ecto-sp13_S_contig10579.536.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10579.536.1 vs. uniprot
Match: A0A6H5KH63_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH63_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 6.060e-76
Identity = 202/248 (81.45%), Postives = 209/248 (84.27%), Query Frame = 1 
Query:  169 AGPSAATVRKPLPASMSRDEFRRKTRTIAKDVEVVQAPLPVMSESAMDADAYGREGDDGRGXXXXXXVKAFVTSKSGTRKIGFAGTGGRSGTGRVAVKSAXXXXXXXXXXXXXXXXXXXXXXXXTAVPALLREADRAVVQSDTDSDEXXXXXSVNSSDLVDDTEDSWXXXXXXXXDGDRVSEISEIVGDESFAAEEDDEAKEKVQEKGKGDKSPRTPPSRGGRVAGRGPGKEASASKRNGGSSRRKRA 912
            AGPSAATVR PLPA+MSRDEFRRKTRTIAKDVEVVQAP P MSESAMDADAYGR+GDDG         K F+TSKSGTRKIGFAGTGGRSGTGRVA KSA XXXXXXXXXXXXXXXXXXX     AVPALLREADRAVVQSDTDSD XXXXXSVNSSDLVD      XXXXXXXX   RVSE SEI GDES AA    EAKEKVQEKGKGD+SPRTPP+RGGRVAGRG GK ASASK++GGSSRRKRA
Sbjct:  482 AGPSAATVRNPLPANMSRDEFRRKTRTIAKDVEVVQAPPPAMSESAMDADAYGRDGDDGGAGAGAG--KPFMTSKSGTRKIGFAGTGGRSGTGRVAGKSAGXXXXXXXXXXXXXXXXXXXA---AAVPALLREADRAVVQSDTDSDXXXXXXSVNSSDLVDXXXXXXXXXXXXXXXXXRVSEESEIFGDESSAAXXXXEAKEKVQEKGKGDESPRTPPTRGGRVAGRGRGKGASASKKSGGSSRRKRA 724
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BLAST of mRNA_Ecto-sp13_S_contig10579.536.1 vs. uniprot
Match: D7G0F0_ECTSI (Tau95 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0F0_ECTSI)

HSP 1 Score: 202 bits (514), Expect = 3.680e-51
Identity = 180/254 (70.87%), Postives = 181/254 (71.26%), Query Frame = 1 
Query:  160 ATPAGPSAATVRKPLPASMSRDEFRRKTRTIAKDVEVVQAPLPVMSESAMDADAYGREGDDGRGXXXXXXVKAFVTSKSGTRKIGFAGTGGRSGTGRVAVKSAXXXXXXXXXXXXXXXXXXXXXXXXTAVPALLREADRAVVQSDTDSDEXXXXXSVNSSDLVDDTEDSWXXXXXXXXDGDRVSEISEIVGDESFAAEEDDEAKEKVQEK---GKGDKSPRTPPSRGGRVAGRGPGKEASASKRNGGSSRRKRA 912
            AT AGPSAA VR PLPA MSRDEFRRKTRTIAKDVEVVQAP P MSESAMDADAYGREGDDGRG       KAFVT KSG RKIGFAGTGGRSGTGRVA KSA XXXXXXXXXXXXXXXXXXXXXXX  VPALLREADRAVVQSDTDSDEXXXXX     DLV       XXXXXXXX                                   GK DKSPRTPPSRGGR AGRG     SASKR+GGSSRRKRA
Sbjct:  607 ATAAGPSAAIVRNPLPAQMSRDEFRRKTRTIAKDVEVVQAPPPAMSESAMDADAYGREGDDGRGGAGAG--KAFVTRKSGARKIGFAGTGGRSGTGRVAGKSAGXXXXXXXXXXXXXXXXXXXXXXX--VPALLREADRAVVQSDTDSDEXXXXXXXXXXDLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKRDKSPRTPPSRGGRAAGRGXXXXXSASKRSGGSSRRKRA 856
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10579.536.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KH63_9PHAE6.060e-7681.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0F0_ECTSI3.680e-5170.87Tau95 domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10579contigEcto-sp13_S_contig10579:111..4195 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score179.9
Seed ortholog evalue1.4e-42
Seed eggNOG ortholog2880.D7G0F0
Preferred nameTFC1
Model size2253
KEGG koko:K07560,ko:K15202
Hectar predicted targeting categoryother localisation
GOsGO:0000127,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005667,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009303,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0018130,GO:0019438,GO:0032774,GO:0032991,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042791,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044798,GO:0046483,GO:0071704,GO:0090304,GO:0090576,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576
Exons3
EggNOG free text desc.5S class rRNA transcription by RNA polymerase III
EggNOG OGsKOG2473@1,KOG2473@2759
Ec32 ortholog descriptionTranscription factor IIIC, subunit 5
Ec32 orthologEc-02_000650.3
Cds size702
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016,ko03021
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.2365935-UTR-Ecto-sp13_S_contig10579:110..14481681462539.2365935-UTR-Ecto-sp13_S_contig10579:110..1448Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10579 111..1448 -
1681462539.285028-UTR-Ecto-sp13_S_contig10579:3039..31111681462539.285028-UTR-Ecto-sp13_S_contig10579:3039..3111Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10579 3040..3111 -
1681462539.295573-UTR-Ecto-sp13_S_contig10579:4054..41951681462539.295573-UTR-Ecto-sp13_S_contig10579:4054..4195Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10579 4055..4195 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462539.2631693-CDS-Ecto-sp13_S_contig10579:1448..17391681462539.2631693-CDS-Ecto-sp13_S_contig10579:1448..1739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10579 1449..1739 -
1681462539.2755213-CDS-Ecto-sp13_S_contig10579:2628..30391681462539.2755213-CDS-Ecto-sp13_S_contig10579:2628..3039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10579 2629..3039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10579.536.1prot_Ecto-sp13_S_contig10579.536.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10579 1449..3039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10579.536.1

>prot_Ecto-sp13_S_contig10579.536.1 ID=prot_Ecto-sp13_S_contig10579.536.1|Name=mRNA_Ecto-sp13_S_contig10579.536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
MSRDEFRRKTRTIAKDVEVVQAPLPVMSESAMDADAYGREGDDGRGGGGG
GGVKAFVTSKSGTRKIGFAGTGGRSGTGRVAVKSAAAGGGGGGGKRPAGG
AAGGAGGAATAVPALLREADRAVVQSDTDSDEDSESDSVNSSDLVDDTED
SWDSQQDDTSDGDRVSEISEIVGDESFAAEEDDEAKEKVQEKGKGDKSPR
TPPSRGGRVAGRGPGKEASASKRNGGSSRRKRA*
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mRNA from alignment at Ecto-sp13_S_contig10579:111..4195-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10579.536.1 ID=mRNA_Ecto-sp13_S_contig10579.536.1|Name=mRNA_Ecto-sp13_S_contig10579.536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4085bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10579:111..4195- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGCCGCCGCCGCTGCTGCTGCTCGTGACGCGGGTGCCTCTGCCGGTGA
CGGCAGTAAGTCAGCGGAAGCGGGTGCTGCGACAACGGGGGCATCTTCTT
CTTGTCTAGCTGCTGCCATCGGGCCTGGGCAGGCGAAAAAGGTATTAATC
CGAATATGTATGGTCTTTTAATAAGACTCCAGAATTAGAGCCTGGTGTCC
AGCCGGTTTGTCGGCCACCACAACAGTGCGAAGAGCTCAACGCATTCCCT
TCGAGTGCTGTGGTGTTATCTCGAGCGGTTCATCTTTCTGTGATCGTATG
TGTATTTTCTACAGGAAAATTCATCACGAATTGCCTTGTGTGGCCTGACG
TGCTACGATGGGCCTTGTGGCTTAAGTGACGACATGTTTTCGCGGTGGCC
GTGTGTAACAGGTTCGAATGCAGCGGCCGCCGTGTGAATGGCAATGCCCG
CAAATCCTGTAACGACCCAACGGACACTTGTTCGAGTACTCCCTTGAGCA
CGTCATGGGTTTTACCCGAGTACGTTGTTTCCATGATCGCAGCACCGACG
AACCACGTGTTCCGTTATTAGGGCCGGCGATGGCGTTACGGGGGTGCACT
CCAAACGACCGAGAGTAGTTAGTGGGCAAAACTAACGATAGACCAGACGG
GACTAACGGAATGCGGAGAACCTCAAAAAGCGTCTGCCACGGGGGTGGTG
TGTACATCCACGGGTGCCTGCATCATGCAGAAAAAGGGACGCGTTACGCA
CCATCTCGAGCTGTGCTCGGGTGTTCCCTTGTGCAGGTGCTCTCTCTTGC
TCTTGCCTCTCGCTCTTGCTCTCTGTCTGTCTGTCTGTCTGTCTCTGGTT
GCCTGTCTCTCTTGTGTCTATATGTTTCGCTCGAGTGTTGCCCACCAGCC
TCTCACTTTCTTCATGGCGTCTCTACGTAAGGCTGTAGTATCCATTCACC
CCGGCCCGTCCGTATCCATTATTTAGCACATTAATATTAACAAAGCCTTC
GGTCGACATGCTAAATAGTGAACAAATCCTTCTACTTCTGGACCCCTCCC
GCAACGTGCGCGCACCCATGGCGCCATGCGACAGCAACAGCAGCAGAACA
AGGCCACCCCCGCCGGCCCTAGCGCTGCGACAGTGAGAAAACCCCTCCCG
GCCAGCATGTCTAGGGACGAGTTTCGCCGCAAGACCAGGACCATCGCGAA
AGACGTGGAGGTCGTCCAGGCGCCGCTCCCGGTAATGTCGGAATCAGCGA
TGGATGCCGACGCGTACGGCCGAGAAGGAGACGATGGCCGCGGCGGCGGC
GGCGGCGGCGGCGTTAAAGCTTTCGTGACCTCCAAGAGCGGCACGAGGAA
GATCGGCTTCGCTGGCACTGGCGGCCGCAGCGGTACCGGCCGCGTCGCTG
TGAAGTCGGCCGCCGCCGGCGGCGGCGGCGGGGGTGGGAAACGGCCTGCT
GGTGGAGCAGCCGGCGGTGCGGGGGGCGCCGCTACTGCCGTTCCGGCTTT
GTTGAGGGAGGCGGACAGGGCCGTGGTGCAGTCGGACACGGACTCGGACG
AGGACTCGGAGTCTGACGTGAGTGGGCGAGAATATCGACGGCGTGTTGCT
TTCGTACCTCTTCGCGGGCGAGATTAACGTAGTGGGTCGCGAAATGCATC
AGTCTCCCCCATGACGCATCCCAGTGGAGTCCCAGATCATGGCCCTTACA
TAGAAGCATTTGCTGATTTCAACCGCGCTGAGACTGACGTATTTTCATTG
GCCAGCCGGCTAGCGCCATCGATGCTAATAACAAAGACGCACACGCCGCT
TGGAACGACTTCCAGAGCTCGAGTACTCTGCAGCGTAAACGGTTTGAAGG
TGCCGAACACGGCGGGGTTGGAACCGTCTCATCGAGAGAGAGAGCTTTGC
GAAAACGTAATACATTCATTTCGATGCCCTCTTCGTCGTGGAGTACAGTA
TCGAGCTGTGAAAGTTGATCCACGGGATGTGTAGCATGCGGGTGCAGTGT
CTTACGTGTGCCACGGTAGTAGCGTCTGTGTGGGTACGAGATTATCCACA
TTGGCAACCTCGGGGTCGTTTTAACTGTGTACGGGCTTCGCCACGTGAGC
TCCGGGCCATGTCGTCAAGCCAGGATGACGTCAAGGATATTATCCTCCTG
CTCTCTCTCGTGGCGATTGTTTCGGTACGCCCCGTCTGCTCTTCGAAACA
AGTCTATCTTCGCGTGTGGCGCGAGCCCACAGCTGTCTTTTCTCTGTCCG
CGAGTCATTGTCTCTTGGTTTTCCCGTCCAGAAGCAGGTGACTTCAAAGA
AAGTACGCCTCTGTTGAGTTTGTCATTACCAGCGCCCCCCGTTTCTCCCA
GGATTATCTTTCTGTCTTCGTTCGCCCAGTCTGTGACCTGACAAGTTCAC
CCCTTGTTTCCTTTGTGCTTTTTTTTTTTTTTGCTGTTGGTGTACCTGTC
ACCCAGTCTGTGAACTCGAGCGACCTCGTGGACGACACTGAGGACAGTTG
GGACTCCCAGCAGGACGATACCTCTGATGGTGACAGAGTCTCCGAAATCT
CCGAAATCGTCGGCGACGAGTCCTTCGCAGCAGAAGAAGACGACGAGGCC
AAGGAGAAGGTACAGGAAAAGGGCAAAGGGGACAAAAGCCCCCGAACCCC
TCCCTCGCGAGGCGGCAGAGTGGCCGGCCGGGGGCCGGGGAAGGAGGCTT
CTGCATCCAAGAGGAACGGTGGGAGTTCCCGTCGCAAGAGGGCGTGACGT
GCGGGGGAAAGGAGCTTTCGCAAGGAAGAGAAGCGGTGGGAGTTCCCGTG
GTAGATGGACGTGATGGGCGGGTGAAGGTAGCTTTCGCGTCCGCGAGGAG
CGGTGGGAGTTCCCGTGGTGAAATAAGTGTTGTAGACAGGGGTACGCGGC
TGCTTGTTTTCTGCTCGGGTGCATCGCAAAGTTTAGGCTTACTGGGGTCC
CCGTACAGCTGCAGACGAATGTTTAAGGGTAAAAGCATTGGGGTCTGGGT
GATGGTTCGCTTGCAAACGCAATCGTCATGAGAGTATGGAAATTGATTTG
GCCGAATGTCGGGGCGGTTGGATTGTCCAGAGTGTAACACCGGCCAGCAA
CGATGAAATTGGAACTTGGAGAATGGGCTCAATTTCCAGGAAACTACGGA
ATTGACGTCAAGAAACGCAGCTCCGAAGTGTATCCTGCACCTTGTCAAAA
GCGAGGCCTCACGACGTTGCTTAACAGCGGGCGGCTACTGTGAACGAGAA
GAGACATGAGGGGATGGAGGGAGGTGTAAATGGTGTGCTTTGGTTCCGCT
GCTCATAGCTTATCTGGCTTGGCGGAATGACGAGCAAGACGGGCACGTAT
TTCATTCAAGCTGGGAGAAAAGGGTGACGTTGGGTGCGTGGTTGGTCCGG
GTGCTCACAGCTCGCCGGCGCGAAATGACGAGTAAAAGGAGCAAGAGTGT
TCAGGTTGAGGCAGCAAGGACCTAGTTCCGACGGCGATGAACCACTTGAT
TTGGCGGCTGCCTGTCACGGGGGGAGAAGACGAGTTTGACGGGGTAAGAG
GAGCGGCCGGGATGTGACGTAAGAATCAACGAGAGGGCCGGTAGAAGCGT
CAAGTGTCGTGGGCATGCGCGAAGCTTGACGGAGGGGCAATGCGCAGAAC
ATCGCACAGCAGTTAGTTGCAGTACGAGCCTCTTATTTCTGGCACGAGGC
TCATTCCTTGTGTCCTGTTGGGGTAACCCGACATGGACTTCATTGCTTTC
ATGTGTAGGGCTCGTGGGTGGAGGCATCTGTTCCTATGACCACCTTCTTT
ACACTGTTGAGTTTACTTGTTTTTGGCATGGGCTTCTTGAATCCCGGGCC
CTTCCTGAAGAATTGGGGCGCTGCTGCTGCTTATTCTGGACACAGGGTGG
TGGTCCCGCAGTGTCGGGGAGAACGAGACGTTGAAAACACAGGGTCGGGG
ATCACACCACGGCGATTTGGCGCGTATATATGTCGCATGACGCATGTTCA
CCAAGACGGAGGAATCGGCAACGGAAAGGAGGGTGGACAGCAGTGACCTT
GTTTCTTGGTGCTGAACGCACACCCTAGCGATAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10579:111..4195-

>mRNA_Ecto-sp13_S_contig10579.536.1 ID=mRNA_Ecto-sp13_S_contig10579.536.1|Name=mRNA_Ecto-sp13_S_contig10579.536.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10579:111..4195- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTAGGGACGAGTTTCGCCGCAAGACCAGGACCATCGCGAAAGACGT
GGAGGTCGTCCAGGCGCCGCTCCCGGTAATGTCGGAATCAGCGATGGATG
CCGACGCGTACGGCCGAGAAGGAGACGATGGCCGCGGCGGCGGCGGCGGC
GGCGGCGTTAAAGCTTTCGTGACCTCCAAGAGCGGCACGAGGAAGATCGG
CTTCGCTGGCACTGGCGGCCGCAGCGGTACCGGCCGCGTCGCTGTGAAGT
CGGCCGCCGCCGGCGGCGGCGGCGGGGGTGGGAAACGGCCTGCTGGTGGA
GCAGCCGGCGGTGCGGGGGGCGCCGCTACTGCCGTTCCGGCTTTGTTGAG
GGAGGCGGACAGGGCCGTGGTGCAGTCGGACACGGACTCGGACGAGGACT
CGGAGTCTGACTCTGTGAACTCGAGCGACCTCGTGGACGACACTGAGGAC
AGTTGGGACTCCCAGCAGGACGATACCTCTGATGGTGACAGAGTCTCCGA
AATCTCCGAAATCGTCGGCGACGAGTCCTTCGCAGCAGAAGAAGACGACG
AGGCCAAGGAGAAGGTACAGGAAAAGGGCAAAGGGGACAAAAGCCCCCGA
ACCCCTCCCTCGCGAGGCGGCAGAGTGGCCGGCCGGGGGCCGGGGAAGGA
GGCTTCTGCATCCAAGAGGAACGGTGGGAGTTCCCGTCGCAAGAGGGCGT
GA
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