mRNA_Ecto-sp13_S_contig1054.507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1054.507.1
Unique NamemRNA_Ecto-sp13_S_contig1054.507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1054.507.1 vs. uniprot
Match: D7FUI2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI2_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 8.160e-58
Identity = 104/132 (78.79%), Postives = 114/132 (86.36%), Query Frame = 1 
Query:  547 MIVNFSKKRCRQRGSIVSIEHGEFLQAFLRLRRDLLKKQQGNGCDRTARKPKSPVNGVRGPESSQTPRATSSLPLLSLRRSLSGTTRVEDGNLHRAVDADTINRSLAKVDRAALSYDPRRVENLRQADLSRV 942
            MIVNFSKKRCRQ GSI+SIEHGEF QAFLRLRRDLLKK+QGNGC +TA KPKS ++G+RGPESS+T R TSSLPLLSLRRSL G TRVEDGNLHRAVDADTINR+LAKVDRAA SYDPRR   L  +   R+
Sbjct:    1 MIVNFSKKRCRQGGSIISIEHGEFSQAFLRLRRDLLKKEQGNGCGKTAHKPKSLIDGIRGPESSKTSRDTSSLPLLSLRRSLPGMTRVEDGNLHRAVDADTINRALAKVDRAAWSYDPRRTVRLTSSAFGRI 132
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BLAST of mRNA_Ecto-sp13_S_contig1054.507.1 vs. uniprot
Match: A0A7S1XWY9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XWY9_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.700e-8
Identity = 64/247 (25.91%), Postives = 108/247 (43.72%), Query Frame = 1 
Query:  373 RRVLHSALDKARDVALHLSWEDWRGVKAFDGPSLTPADIKDLFWRNFRVKLSAAEAEAMIVNFSKKRCRQRGSIVSIEHGEFLQAFLRLRRDLLKKQQGNGCDRTARKPKSPVNGVRGPESSQTPRATSSLPLLSLRRSLSGTTRVEDGNLHRAVDADTINRSLAKVDRAALSYDPRRVENLRQADLSRVSTPRSFGGVLLARFDVRVDPVEQSELVTLLQ-DENGAVDVERFRTYFLGLIKDHAQE 1110
            R  L +AL K  D A  L W +    K F+   L  +D++DLF++NFR++L+ AEA A++  F        G +   ++ EFL  FL+L          N  +R  +  +  ++G+R  E            +   +       +     +         NR+L K+ RAA  +DP R   L    +  +  P +F  +L  +F V+V+  E   L+     D NGA+D   F + F+   ++  +E
Sbjct:  124 RHDLDTALHKVSDAAGKLEWSEENPFKNFEKLELDVSDLRDLFFKNFRLRLTIAEASALLDFFDHD---DNGGV---DYAEFLTTFLKL----------NVSEREKQHKQQVLDGIRAQER-----------IARFKARYDARFKAPVAEMAETYTEVDRNRALQKIARAAGDHDPMRDGGLTSLGME-LMYPTAFKELLRRQFHVKVNAAELKALMDYFDADGNGAIDPTEFLSAFMRAGREAREE 342
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1054.507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FUI2_ECTSI8.160e-5878.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1XWY9_9STRA1.700e-825.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1054contigEcto-sp13_S_contig1054:5642..9923 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1283
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-21_003810.1
Cds size1155
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1054.507.1prot_Ecto-sp13_S_contig1054.507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1054 5770..9923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462537.1451452-UTR-Ecto-sp13_S_contig1054:5641..57691681462537.1451452-UTR-Ecto-sp13_S_contig1054:5641..5769Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1054 5642..5769 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462537.163425-CDS-Ecto-sp13_S_contig1054:5769..58831681462537.163425-CDS-Ecto-sp13_S_contig1054:5769..5883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 5770..5883 -
1681462537.1769555-CDS-Ecto-sp13_S_contig1054:6137..62731681462537.1769555-CDS-Ecto-sp13_S_contig1054:6137..6273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 6138..6273 -
1681462537.1862934-CDS-Ecto-sp13_S_contig1054:6492..65861681462537.1862934-CDS-Ecto-sp13_S_contig1054:6492..6586Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 6493..6586 -
1681462537.1943426-CDS-Ecto-sp13_S_contig1054:7013..72541681462537.1943426-CDS-Ecto-sp13_S_contig1054:7013..7254Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 7014..7254 -
1681462537.202552-CDS-Ecto-sp13_S_contig1054:8020..83031681462537.202552-CDS-Ecto-sp13_S_contig1054:8020..8303Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 8021..8303 -
1681462537.2108319-CDS-Ecto-sp13_S_contig1054:8862..90421681462537.2108319-CDS-Ecto-sp13_S_contig1054:8862..9042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 8863..9042 -
1681462537.2198741-CDS-Ecto-sp13_S_contig1054:9816..99231681462537.2198741-CDS-Ecto-sp13_S_contig1054:9816..9923Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1054 9817..9923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1054.507.1

>prot_Ecto-sp13_S_contig1054.507.1 ID=prot_Ecto-sp13_S_contig1054.507.1|Name=mRNA_Ecto-sp13_S_contig1054.507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=385bp
MNRGIYLVPSSCSQLQPIRPGHVDRHSHTRIDEVERMERVLRKSRSEHSV
RPLDPDCPAPLIARAFRLSNLYGVSPTTKLARKGAGERSNRNHQLRRQQT
GGSPGSSREEEEGRQQQTKTRKRQRRVLHSALDKARDVALHLSWEDWRGV
KAFDGPSLTPADIKDLFWRNFRVKLSAAEAEAMIVNFSKKRCRQRGSIVS
IEHGEFLQAFLRLRRDLLKKQQGNGCDRTARKPKSPVNGVRGPESSQTPR
ATSSLPLLSLRRSLSGTTRVEDGNLHRAVDADTINRSLAKVDRAALSYDP
RRVENLRQADLSRVSTPRSFGGVLLARFDVRVDPVEQSELVTLLQDENGA
VDVERFRTYFLGLIKDHAQEVVNEGAPSLPPVFA*
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mRNA from alignment at Ecto-sp13_S_contig1054:5642..9923-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1054.507.1 ID=mRNA_Ecto-sp13_S_contig1054.507.1|Name=mRNA_Ecto-sp13_S_contig1054.507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4282bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1054:5642..9923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGAGGGATTTATCTCGTCCCTTCGTCCTGTTCACAACTTCAACC
TATACGACCCGGCCATGTAGATCGTCATTCTCACACCCGCATTGATGAAG
TCGAGCGGTGAGTGAGACATGTTCTACCGTACAAAAGCTGACACAAGATA
CCACACCCTTACAACCGGTGTTCACAGCTCGATTTCTCCACAACAGAATA
CGTGGCAGCCCCGAACACGGCAGGGTTGAAGCTGTCTTGGTGAAAGCTTC
CTAAGGCGTATCTTTTCAGTTTTGCATCCTCTTTGTCGTGTTCCTAGTAA
TCGAGGGTCTCCGGGGTGCGGTATCTTGTGTCGCCTTCCGTGAATGCGTC
GAGTGTATTCTGCTGCAGCACATACCCCGCACCCCTTACCACCGGAGTGA
GCATATTTTTATGCACTACAACTCTGTCGTCTGTATATCGAGGAGATATG
TACACCTGTTAAGCCCGGTGTTTGTACACTTTTCAAGCCCAGCTTCCACC
GTTACGCATTTGTCCAGGGATAGGTGTCTGTCACACGGATGGACCAACAA
CCCGCACCCAGCACGCCGTGTTCCGCACAAGATCCATGTTCCAACGACGG
AGGGAGAGGGTTGAAGCTTGATCCAAAAGAAAAAACAGCACTTTCCTCGT
ACAAATTGTAACCTGGTAGAACCGTATTCAGCGGTGGCTCTTGCACTATG
GTATCAACAGTAGTACAAAACACATCGTCCCATCATGTGCAACGCATCAT
GATTTCATACATTCTGGTCTGTTCAAGCATGAGTCTGCATATACAGTGTA
GATTTTGTCGCTTGAATCTACTCCTCAGAGTGGTCGTTGTTGCTGCGGCG
TCTCGCTCAACGACCATTTCCACCGAAACAGGATGGAGAGGGTGCTCCGG
AAGTCCCGAAGTGAGCACAGTGTGCGCCCTCTAGACCCCGACTGTCCGGC
CCCGTTGATAGCTCGGGCTTTCAGATTGTCTAACCTGTATGGCGTTAGCC
CGACCACCAAACTCGCACGGAAGGGGGCCGGGGAGAGATCGAACCGGAAC
CATCAACTCAGGTGTGATTACACTCACCATGTGTTCTGTATCTCTACCTT
CACCATTTACAGTGTTGCCGGTGATTGTGGTTGGCGGTATTGAAGCCCGA
GAATTCACGTCCATTGCGAGTTGGGAGAAGATTGGCGTCCCTTCATTGGT
CAGCCGCGTAGCGCGGTTTGCTCGCCAATATTCCGAAATATTGTGTCAGC
GTGTCTTTTCATTGGCCAGACGGGAAGCGACCACGTACGAAACACGGCGT
TGAAGCCCGAAGCGAAAACATTTGGCTGTGTGCCCAACGCTACATGTCGT
GCGAGCTGAAAATATGAATTTGCTGACAGCGACGCTACTGTTGTGAATAC
GTACAGTATCACAGAGAATCAAACGTACCCATGAAGTTTATGTAGATCAA
ATAGATTTGTTTCAAGTCTTGTTGATGTTCGCGTAAGAAAAACCTAGGGG
TCAACAACGTTTGGAGCAAGCAGATGGACAGGTAGAACGGGAGGACGGAG
GGCATACAAACATCACAAACAGAGCCAGTTGCAATTCACATCCTCACAGG
ACGTACGCCACTCAACACAGGAGGCAACAGACAGGCGGCAGCCCTGGCTC
TTCCCGAGAAGAGGAGGAAGGAAGGCAACAACAGACCAAAACAAGAAAAA
GGCAGAGGAGGGTACTGCATAGTGCGCTCGACAAGGCGCGCGACGTCGCT
CTCCACCTTTCTTGGGAGGATTGGAGGGGCGTGAAAGCTTTTGACGGCCC
TTCCTTAACTCCAGCCGACATTAAGGATCTTTTCTGGAGAAATTTCCGCG
TGAAGCTGTCGGCGGCGGAGGCCGAGGCCATGATCGTGAATTTCAGTAAG
AAGGTAGTTTTCAAAACCGTGATACCATTAGTGGCTGGGTGTGTTTCGGT
TTTGCTTTGGGTATGCCGTTTTCAGCTTCGAGGACGCAACGTCGCAAATA
GATTATATGTGCACGTACTGCTATTCGCACGCCATCAACTATTGAAGGGA
ACCTAACAACAAATCAACAGAATTAATCGGTTGCGCTCGTACGTTCTTTC
AGGAGAATCCAATAGCGACCCTTGTTATCACCCCCTCGCTGAAACACATG
AGCTTTTCGGTATCCTCCTGTACGATGCAACGCGTCGAGATTGCTAATAC
TGACAGCCGTTCGTGAGTACGACCGAAACAGTAGCCAGATTGAGAAACTT
CGAGGAGGCCTGCGGCGAAAACAACTCAGTCTATCTCTTTGGAATGACGC
CGCTGGACGTGACTGCAGTCTATGCGTAGAACGAGGAACGACACATTCTA
CCAGCCCAACTGCAGCAGCTTTAGTCGTACAGTTGCGATAGTATGTGGTC
GCGCCACAAACAAATATGGACGTAGTAGCTGTAGGAAATGTGGGATGTAT
GGTGCCATCGATATGTGTGCGGGGAAGTGCAACATCCTTGCACCAAGTGA
ACGTAACATTGCGGCGAGACATCGCTACCATGACCACTTCATCTCCAAGG
TGTGGTGCAGTATATAGATCGGTATTCGCAACTAACGCCCCGCAGTGTCC
GTTAAAATAAGGTATTCGTGCGCCTGTTTTTTACCTCTTTTTGTGGATGG
GCATGAACGGAAACCTAAGAGGTGCCGACAGAGAGGTTCCATCGTCAGCA
TCGAACACGGGGAGTTTTTGCAAGCGTTTCTGCGACTCCGGCGGGATCTG
CTCAAGAAACAGCAGGGCAACGGCTGCGACAGAACAGCGCGCAAACCCAA
GTCTCCGGTCAACGGTGTTCGGGGGCCTGAGTCGTCCCAAACGCCGAGAG
CCACCTCCTCCTTGCCATTGTTGAGCCTGCGGCGAAGCCTTTCTGGGACG
ACAAGAGTCGGTGAGAAGGTCCTACGCAGTGGTTGTCCAAGCTGTACGCA
AAAATATCCCTACACTTTGCGGAGACTATATGTATCTGTAGCTCTCCTCT
TCCTCCGACATTCCCCTCTTCGTGCCGAAGCCACCCCCACCTGTGTCATG
CTGGACATGTACCAGGCGATACGGTACACAATTCAATCTTCAACGTAACT
CTTCGCCATTCCCTCGTTTGTGGCCGTGGACTCTTCTCCCTCAATTCCTG
AATTTGCGGCGATCAGGCGACCTAAACAGGCACCTACGCTTGCGCACAAC
CTGCGAAATAGACGAGACCTAACATAGCGAACTGACGCTCCTTTTCGAGC
TCAATGCGAAATACCGACTGCAATGGCAGTGATAAAACATTTTTGGCGAT
GACAACATACCACAAAATTGCGTGAAATTTACTGCAGAAGACGGCAACTT
GCATCGAGCTGTAGACGCGGACACAATCAACCGATCTCTCGCGAAGGTGG
ACCGAGCGGCCTTGTCGTACGACCCAAGAAGGTGCAGTGAGTCCGGCCTT
CAAACGTCTTCTCATTAAGCAAGGGTGGACCATCGTCTTGACAAGGTGTA
CGATCTGGTGCTCCTAGCGATCATTCACCACTCAAAGTCTCCACGGAGCC
CCGAGAGTAACTTGAAGTGTATTCCTTGCAGAAGCAAGTTGCGACACAGC
TGCATAGGTAATTCTCATCGCAAAAAGTGTTGGTGCACACCACGTCACAG
GGTTGAGAACCTGCGTCAGGCTGACCTCAGCAGAGTGAGCACCCCACGGT
CGTTCGGAGGTGTCCTCCTTGCGCGATTCGATGTTCGGGTTGACCCGGTG
GAGCAAAGCGAGCTGGTGACACTCCTCCAAGACGAGGTTTGTGCGAAGCT
TAATTCAGGGCCCTGGAGTCAGGGGGGAGGGCTTTTGCGGGAGGCGAAGA
CTAAATACTAGTTGCTGAAATATTGGAACGGAGCAGAAGTACCTGGTAGC
AGTTATGCATTCGATAGGAGGCACCACGAAGACAGGTGTCAAACCTCGGA
AGTGGCCCCTTTCGCAATAGATGGCGACTGCAATGAATTAATGACTAAAT
TGCTTGCTTGTCCCTGCAACTTTGCCTGCTATACAAACAGAACGGTGCGG
TGGACGTCGAGCGCTTTCGGACGTATTTTTTGGGTCTTATCAAAGATCAC
GCCCAAGAAGTCGTGAACGAGGGTGCTCCCTCCCTACCTCCCGTGTTTGC
ATGAGGATCACCGTTGAAGGCAGCAGAGACGAAGCGCTAGGGCAGGGGCA
GGGACAGGGGCAGGGGCAGGGGCAGCGGCGACACGCGCATCTGCACAACA
TGGAACGCCCGGGATGCCCCGGCACTTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1054:5642..9923-

>mRNA_Ecto-sp13_S_contig1054.507.1 ID=mRNA_Ecto-sp13_S_contig1054.507.1|Name=mRNA_Ecto-sp13_S_contig1054.507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1155bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1054:5642..9923- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACAGAGGGATTTATCTCGTCCCTTCGTCCTGTTCACAACTTCAACC
TATACGACCCGGCCATGTAGATCGTCATTCTCACACCCGCATTGATGAAG
TCGAGCGGATGGAGAGGGTGCTCCGGAAGTCCCGAAGTGAGCACAGTGTG
CGCCCTCTAGACCCCGACTGTCCGGCCCCGTTGATAGCTCGGGCTTTCAG
ATTGTCTAACCTGTATGGCGTTAGCCCGACCACCAAACTCGCACGGAAGG
GGGCCGGGGAGAGATCGAACCGGAACCATCAACTCAGGAGGCAACAGACA
GGCGGCAGCCCTGGCTCTTCCCGAGAAGAGGAGGAAGGAAGGCAACAACA
GACCAAAACAAGAAAAAGGCAGAGGAGGGTACTGCATAGTGCGCTCGACA
AGGCGCGCGACGTCGCTCTCCACCTTTCTTGGGAGGATTGGAGGGGCGTG
AAAGCTTTTGACGGCCCTTCCTTAACTCCAGCCGACATTAAGGATCTTTT
CTGGAGAAATTTCCGCGTGAAGCTGTCGGCGGCGGAGGCCGAGGCCATGA
TCGTGAATTTCAGTAAGAAGAGGTGCCGACAGAGAGGTTCCATCGTCAGC
ATCGAACACGGGGAGTTTTTGCAAGCGTTTCTGCGACTCCGGCGGGATCT
GCTCAAGAAACAGCAGGGCAACGGCTGCGACAGAACAGCGCGCAAACCCA
AGTCTCCGGTCAACGGTGTTCGGGGGCCTGAGTCGTCCCAAACGCCGAGA
GCCACCTCCTCCTTGCCATTGTTGAGCCTGCGGCGAAGCCTTTCTGGGAC
GACAAGAGTCGAAGACGGCAACTTGCATCGAGCTGTAGACGCGGACACAA
TCAACCGATCTCTCGCGAAGGTGGACCGAGCGGCCTTGTCGTACGACCCA
AGAAGGGTTGAGAACCTGCGTCAGGCTGACCTCAGCAGAGTGAGCACCCC
ACGGTCGTTCGGAGGTGTCCTCCTTGCGCGATTCGATGTTCGGGTTGACC
CGGTGGAGCAAAGCGAGCTGGTGACACTCCTCCAAGACGAGAACGGTGCG
GTGGACGTCGAGCGCTTTCGGACGTATTTTTTGGGTCTTATCAAAGATCA
CGCCCAAGAAGTCGTGAACGAGGGTGCTCCCTCCCTACCTCCCGTGTTTG
CATGA
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