mRNA_Ecto-sp13_S_contig1052.494.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1052.494.1
Unique NamemRNA_Ecto-sp13_S_contig1052.494.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: D7G356_ECTSI (Sporulation-specific protein 11 homologue n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G356_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 9.060e-57
Identity = 89/99 (89.90%), Postives = 96/99 (96.97%), Query Frame = 1
Query:   13 NKAHVSPLHFLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            ++A+VS LH+LRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQ+KEGSSRQGRGSAKF VPEMKWVGLRPSQLDDL+LP+E 
Sbjct:  126 DRANVSTLHYLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQYKEGSSRQGRGSAKFGVPEMKWVGLRPSQLDDLDLPDEV 224          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: A0A6H5KRW2_9PHAE (TP6A_N domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRW2_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 5.000e-49
Identity = 77/81 (95.06%), Postives = 81/81 (100.00%), Query Frame = 1
Query:   67 VTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            +TGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQ+KEGSS+QGRGSAKFRVPEMKWVGLRPSQLDDL+LPEEA
Sbjct:  127 ITGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQYKEGSSKQGRGSAKFRVPEMKWVGLRPSQLDDLDLPEEA 207          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: A0A836CJS5_9STRA (Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJS5_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.150e-26
Identity = 52/97 (53.61%), Postives = 68/97 (70.10%), Query Frame = 1
Query:   19 AHVSPLHFLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            A +S   F  R+P ++VTGQGFPP+AVRA V  L  AL+LP  GLVDC PFGLS+ L +  G +R G  +A +   ++KW+GLRPSQLD L+LP +A
Sbjct:  130 ARLSEDRFYDRLPCIIVTGQGFPPVAVRAMVRALQSALNLPAYGLVDCGPFGLSLLLTYVHGGARMGEQAAHYTA-DVKWLGLRPSQLDALDLPAQA 225          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: D0MT30_PHYIT (TP6A_N domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MT30_PHYIT)

HSP 1 Score: 102 bits (253), Expect = 9.410e-24
Identity = 48/90 (53.33%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            F   +PS+L+TG+GFP LA RA V  L+ AL +PVLGL DCNPFGLS+ L +K GS+R    S ++ V ++KWVG+RPSQ+  L LP  +
Sbjct:  191 FFETVPSILITGRGFPDLATRAFVNLLSNALGIPVLGLCDCNPFGLSIMLTYKLGSARMPLDSLRYAV-DIKWVGVRPSQVSHLGLPTSS 279          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: W2KQB5_PHYPR (TP6A_N domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2KQB5_PHYPR)

HSP 1 Score: 101 bits (252), Expect = 2.310e-23
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLP 300
            F   +PS+L+TG+GFP LA R  V  L  AL++PVLGL DCNPFGLS+ L +K GS+R    S ++ V ++KWVG+RPSQ+ DL+LP
Sbjct:  240 FFEIVPSILITGRGFPDLATRVFVSLLRSALEIPVLGLCDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIADLDLP 325          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: A0A2P4X7X3_9STRA (Topoisomerase acting in meiosis n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X7X3_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.570e-23
Identity = 47/90 (52.22%), Postives = 64/90 (71.11%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            F   +PSVL+TG+GFP LA R  V  L+ AL++PVLG+ DCNPFGLS+ L +K GS+R    S ++ V ++KWVG+RPSQ+  L LP  +
Sbjct:  145 FFEMVPSVLITGRGFPDLATRIFVSLLSRALEIPVLGICDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIAGLGLPTSS 233          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: G4ZQQ3_PHYSP (TP6A_N domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZQQ3_PHYSP)

HSP 1 Score: 100 bits (249), Expect = 4.940e-23
Identity = 47/90 (52.22%), Postives = 65/90 (72.22%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            F + +PS+L+TG+GFP LA R  V  L+ AL +PVLGL DCNPFGLS+ L +K GS+R    S ++ V ++KWVG+RPSQ+  L LP+ +
Sbjct:  218 FYKMVPSILITGRGFPDLATRVFVSLLSHALKIPVLGLCDCNPFGLSIMLTYKLGSARMPLESLEYAV-DIKWVGVRPSQIAALGLPQSS 306          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: W2PU68_PHYPN (Apple domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2PU68_PHYPN)

HSP 1 Score: 101 bits (252), Expect = 5.050e-23
Identity = 48/87 (55.17%), Postives = 64/87 (73.56%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLP 300
            F   +PS+L+TG+GFP LA R  V  L  AL++PVLGL DCNPFGLS+ L +K GS+R    S ++ V ++KWVG+RPSQ+ DL+LP
Sbjct:  364 FFEIVPSILITGRGFPDLATRVFVSLLRNALEIPVLGLCDCNPFGLSIMLTYKLGSARMPLESLQYAV-DIKWVGVRPSQIADLDLP 449          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: A0A7S2JQ12_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JQ12_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 8.250e-23
Identity = 45/92 (48.91%), Postives = 66/92 (71.74%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLN--LPEEA 309
            F  ++P +L+TG+GFP LA RACV+ L   L++PV GL DCNPFG+SV + +  GSS+ G  +  + VP +KW+GLRPS +++L+  LP+E 
Sbjct:  203 FFDKVPCILITGKGFPDLASRACVFALHNMLNIPVYGLCDCNPFGVSVLMTYWRGSSKLGNDADSYSVP-VKWLGLRPSHIEELSPELPQEV 293          
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Match: A0A8K1C609_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C609_PYTOL)

HSP 1 Score: 99.8 bits (247), Expect = 8.840e-23
Identity = 47/90 (52.22%), Postives = 66/90 (73.33%), Query Frame = 1
Query:   40 FLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLGLVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLPEEA 309
            F+ ++PS++VTG+GFP LA R  V  L+  L+LPV+GL DCNPFGLS+ L +K GS+R    +  F V ++KWVGLRPS+++ L+LP  A
Sbjct:  211 FVDQLPSIIVTGRGFPDLATREFVSLLSRTLELPVIGLSDCNPFGLSIMLTYKLGSARMPLDTRPFGV-DIKWVGLRPSRIEQLDLPPTA 299          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1052.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G356_ECTSI9.060e-5789.90Sporulation-specific protein 11 homologue n=1 Tax=... [more]
A0A6H5KRW2_9PHAE5.000e-4995.06TP6A_N domain-containing protein (Fragment) n=1 Ta... [more]
A0A836CJS5_9STRA2.150e-2653.61Spo11/DNA topoisomerase VI subunit A n=1 Tax=Tribo... [more]
D0MT30_PHYIT9.410e-2453.33TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
W2KQB5_PHYPR2.310e-2355.17TP6A_N domain-containing protein n=2 Tax=Phytophth... [more]
A0A2P4X7X3_9STRA3.570e-2352.22Topoisomerase acting in meiosis n=2 Tax=Phytophtho... [more]
G4ZQQ3_PHYSP4.940e-2352.22TP6A_N domain-containing protein n=1 Tax=Phytophth... [more]
W2PU68_PHYPN5.050e-2355.17Apple domain-containing protein n=6 Tax=Phytophtho... [more]
A0A7S2JQ12_9STRA8.250e-2348.91Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A8K1C609_PYTOL8.840e-2352.22Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1052contigEcto-sp13_S_contig1052:10438..11131 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score189.9
Seed ortholog evalue6e-46
Seed eggNOG ortholog2880.D7G356
Model size310
KEGG koko:K10878
KEGG Pathwayko04113,map04113
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.DNA topoisomerase VI subunit A
EggNOG OGsCOG1697@1,KOG2795@2759
Cds size309
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462536.1449125-CDS-Ecto-sp13_S_contig1052:10437..105741681462536.1449125-CDS-Ecto-sp13_S_contig1052:10437..10574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1052 10438..10574 -
1681462536.1557972-CDS-Ecto-sp13_S_contig1052:10959..111311681462536.1557972-CDS-Ecto-sp13_S_contig1052:10959..11131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1052 10960..11131 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1052.494.1prot_Ecto-sp13_S_contig1052.494.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1052 10438..11131 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1052.494.1

>prot_Ecto-sp13_S_contig1052.494.1 ID=prot_Ecto-sp13_S_contig1052.494.1|Name=mRNA_Ecto-sp13_S_contig1052.494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
MFLPNKAHVSPLHFLRRIPSVLVTGQGFPPLAVRACVYRLAEALDLPVLG
LVDCNPFGLSVFLQFKEGSSRQGRGSAKFRVPEMKWVGLRPSQLDDLNLP
EEA
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mRNA from alignment at Ecto-sp13_S_contig1052:10438..11131-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1052.494.1 ID=mRNA_Ecto-sp13_S_contig1052.494.1|Name=mRNA_Ecto-sp13_S_contig1052.494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=694bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1052:10438..11131- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGCCGAACAAGGCGCACGTTTCCCCACTCCATTTTCTTCGCAG GATTCCGAGTGTCCTAGTCACTGGGCAAGGGTTCCCGCCTTTGGCGGTTC GAGCGTGCGTCTACAGGCTGGCCGAGGCCTTGGACTTGCCGGTGCTCGGT CTGGTCGACTGCAACCCGTTTGGTGAGATCAACGAAGGGTTCACAAACAA CCCTCGCGTAGTAATGTGCGTCAAGCGAAAAGTATCCTGTCGACATCTTC TAGATTCGGTGAGGAACCCGGCCAAAAACTCCCAATGGGGTCGTCACTCC GGTTCTATGTGGTAGTTCCTTAAACGACTACATTTTTGCGTCCCCTTCGC TTTGATGTGGACTCTTGCCACGATACGTCAACAAATTGCCATGTTGGTGT ATGTCTAAGCGGCGTGTTTCGATACTTGAAGCCACGCGCGATGAATGCTG TGCAAGTGTTTCATTCCGAAGCTCGAAGCATTAGCACATAATATCGTATG CCGACTGCCTTTTACCAACTACCATGCATTGCGATGACGGTTCCCGCACT TTTCTAGGGCTCAGCGTCTTTCTCCAGTTCAAGGAGGGCTCGTCGAGGCA GGGACGGGGCTCCGCCAAATTCAGGGTGCCCGAAATGAAGTGGGTGGGTC TGCGCCCTTCCCAGCTTGACGATCTGAACCTTCCCGAGGAGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1052:10438..11131-

>mRNA_Ecto-sp13_S_contig1052.494.1 ID=mRNA_Ecto-sp13_S_contig1052.494.1|Name=mRNA_Ecto-sp13_S_contig1052.494.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1052:10438..11131- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGCCGAACAAGGCGCACGTTTCCCCACTCCATTTTCTTCGCAG
GATTCCGAGTGTCCTAGTCACTGGGCAAGGGTTCCCGCCTTTGGCGGTTC
GAGCGTGCGTCTACAGGCTGGCCGAGGCCTTGGACTTGCCGGTGCTCGGT
CTGGTCGACTGCAACCCGTTTGGGCTCAGCGTCTTTCTCCAGTTCAAGGA
GGGCTCGTCGAGGCAGGGACGGGGCTCCGCCAAATTCAGGGTGCCCGAAA
TGAAGTGGGTGGGTCTGCGCCCTTCCCAGCTTGACGATCTGAACCTTCCC
GAGGAGGCG
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