mRNA_Ecto-sp13_S_contig10487.463.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10487.463.1
Unique NamemRNA_Ecto-sp13_S_contig10487.463.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10487.463.1 vs. uniprot
Match: A0A6H5L6A0_9PHAE (SAP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6A0_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.180e-17
Identity = 43/44 (97.73%), Postives = 44/44 (100.00%), Query Frame = 1 
Query:  379 GLSKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLDAGLVA 510
            GLSKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLD+GLVA
Sbjct:  149 GLSKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLDSGLVA 192
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BLAST of mRNA_Ecto-sp13_S_contig10487.463.1 vs. uniprot
Match: A0A6V8D0I6_9ARCH (SAP domain-containing protein n=2 Tax=Candidatus Poseidoniales TaxID=133814 RepID=A0A6V8D0I6_9ARCH)

HSP 1 Score: 52.8 bits (125), Expect = 1.980e-5
Identity = 23/41 (56.10%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  379 GLSKEGLMKLTVKDLRERCKAAGVPTSGRKADIVDRLLDAG 501
            G S E L  L+V DL+ERCKAAG+P  G+KAD+++RL  +G
Sbjct:   45 GSSDEDLSSLSVADLKERCKAAGLPVGGKKADLIERLSTSG 85
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10487.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6A0_9PHAE8.180e-1797.73SAP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6V8D0I6_9ARCH1.980e-556.10SAP domain-containing protein n=2 Tax=Candidatus P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10487contigEcto-sp13_S_contig10487:720..3090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1025
Hectar predicted targeting categoryother localisation
Exons2
Cds size516
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.9724503-UTR-Ecto-sp13_S_contig10487:719..12271681462533.9724503-UTR-Ecto-sp13_S_contig10487:719..1227Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10487 720..1227 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.9832387-CDS-Ecto-sp13_S_contig10487:1227..16471681462533.9832387-CDS-Ecto-sp13_S_contig10487:1227..1647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10487 1228..1647 -
1681462533.9945405-CDS-Ecto-sp13_S_contig10487:2994..30901681462533.9945405-CDS-Ecto-sp13_S_contig10487:2994..3090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10487 2995..3090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10487.463.1prot_Ecto-sp13_S_contig10487.463.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10487 1228..3090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10487.463.1

>prot_Ecto-sp13_S_contig10487.463.1 ID=prot_Ecto-sp13_S_contig10487.463.1|Name=mRNA_Ecto-sp13_S_contig10487.463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=172bp
GAGAGTGVKKRQPKKETARQAALEAKERKASEEAEAKKARAAAAAAEREA
QKVKDIEVKKKIATAGAAASAAKPPPPPPPPHEGHQAASAKKTTRARGRA
APPATSKAKPAAAAAAGAAAGEGEGRGLSKEGLMKLTVKDLRERCKAAGV
PTSGRKADIVDRLLDAGLVAP*
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mRNA from alignment at Ecto-sp13_S_contig10487:720..3090-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10487.463.1 ID=mRNA_Ecto-sp13_S_contig10487.463.1|Name=mRNA_Ecto-sp13_S_contig10487.463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2371bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10487:720..3090- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGGGAGCGGGCACCGGGGTTAAGAAGAGGCAGCCGAAGAAGGAGAC
GGCGCGGCAAGCGGCGCTGGAGGCAAAGGAGAGAAAGGCCAGCGAGGTGC
GTGGTGGTGTTTTGAGGCTCTCTCTCTGCCCTCTCTCGTCATTGGGTACG
AGCTTTCCGGTGTACTCATCTGTCAATGCCTCAACTCGTCGGTCTTGGTG
TATGCGCTTGTTGATGCTTGACTCACAGCCGTGTGACTCACAGCGGTTGG
TAGCGGTGCTTTGAGCCTCTCTCGTCCTGATGGTTACAAGTAACGAGCCT
TTCGGGGGGGGTGTCTGTCTGTATATCCCTCATCCTCGTCCCTCACACGC
ACCCTCCTCGTCATCCTGGGGGTGTGCTCTTCGATGTTTGATTTACAGTG
GCTGGTGGTGGTGCTTTTGGCCTCTCTCGTCACAATGGTTACCATCTTCC
GAGTGCTCTTTCGCACAGATCCCTCAGCTCAGCTCGCCGTTGCACCTTTG
CGGTCTAGAATTTGTCTGCGCTGGTGGTGGTGATAGAAATGTGCCTGTGG
GTGTTTTCTCGACTCCATTTCTTTCTTTGTGTGGTCGGGATGCTTCGTTT
TTCTGATTCCCTCAATCGATTGCTCGACAAACAAGGTGGGTGAGGAAAGA
GCCCATACATCTACGGAAAGCTCTCGACGAGAGGTTTTAAAGCCACTCTT
TCTTGGTATTGGTTGTGGAGCAATCGAGCTTTGCAATTTTTTGGTCTACA
AGAAGGGGGGGTGCCACCTCTCATCCTCTTACGGTGCCCCCGCAATCCTG
CATGAGCTTCCCACAAGCTGTAGCCAATGGCGTGCGGTCATACACATGCC
CTCGCACGCGGCCCAACAACAGGGCGCTCTGTGTCTTATTGGCCGCAAAT
TAGTCGAAAACGTGAACTGAATGAAGCAAGTTGTGACCCGCAAAAACTCG
AATCACCCTTTTTTTGCCACTGGGACAAAACTCTGTCTCGATGAGCCGCA
AGAATGTCCCTCGGATTTGAATTATGTTTCCCCGGCAGGCCACCCTCCCC
CAGTGAGAGGGGACAAGAAATCCCCGAAAAAGTGGTGCTTAAGAAACGGA
CTAAGACATCGTAGCTCTTCTCTGGTTTTGTTTTTCCTTGTTTGTCATTA
TATCGCACAATTACCCATCTCTATCCACAGACGTCTGTGATAACTTTTTT
TTGAGAATATACATAACAAACACATAAGACTACAACCCGTTCGAGATCAC
AGTCGAAGGTGCTTCATTCCATTCTAGTTCGTTTTTATTTTTTGAACTTC
TTTTTTCGTAAATGTACACAACAAACAGAGACTGCAACCCGTTCGAGATC
ACAGTCGAAGGTATACTTCATTTTATTTTATTTTATTTTATTCGTATGCT
TATTTCATTAACTTGCGTTGTTTTGTTTCTTTCGGCGCGGCAGGAGGCGG
AGGCGAAGAAGGCCCGGGCAGCCGCCGCGGCCGCCGAAAGAGAAGCGCAG
AAGGTGAAGGACATCGAAGTTAAGAAGAAGATTGCCACGGCGGGGGCGGC
GGCCTCTGCAGCGAAACCGCCGCCGCCGCCGCCGCCGCCGCACGAGGGTC
ACCAGGCGGCCTCCGCCAAGAAAACAACACGGGCGAGAGGTCGGGCAGCG
CCGCCGGCTACATCAAAGGCGAAGCCCGCCGCCGCCGCTGCTGCTGGTGC
TGCTGCCGGGGAGGGGGAGGGAAGGGGCTTGTCAAAGGAAGGGTTGATGA
AGTTGACGGTGAAGGATTTGAGGGAGCGTTGTAAGGCGGCCGGGGTGCCG
ACGTCGGGGAGGAAGGCGGACATCGTGGACCGACTTCTAGACGCGGGCCT
CGTTGCTCCGTAGACTTAGTAGTAGCTTGCATGCCATACAATACAGCACT
GATTTACTGTTAGAACGCGGGTTTCGGTGGTATCAGTACCTCGTGAAATG
GCGTACGTACCATACAGCGGGCTTTGCTGCTGTTGTTGTTGTTGCTGTGA
TGCGCTGAACGGCTGTCGTTCTTCGGCGCGTGTTGCCCTGCTTGGAACCA
ATGCCTAACTTGCCACTCTTGAGGAGACGCTGGCTGCCCTTGGCAAGCCG
CGAAACCGGCGCCGGACCGCTTACGGGACCTGCTCTTTTGATTCTACGGC
TGAGAATAACAAGTGGAGTGTGAATCTATCTCCACTTTTTCGCGTAGCGT
TTTTGGCAGTCCTAACAACAACGCCGGTGATTTCTCCCGGCTAGGAAGGA
CGATAGGCGGAAGGTTTGGGGTTCTTGCTCGGGGCTCTGGTTGGTTTCCC
TATCTGGGTTGGTGTTTTCGGGTAACGTCCGCAGGTAGCAGCTAGCCGAA
GAGGCACCTCGTGAGTTTACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10487:720..3090-

>mRNA_Ecto-sp13_S_contig10487.463.1 ID=mRNA_Ecto-sp13_S_contig10487.463.1|Name=mRNA_Ecto-sp13_S_contig10487.463.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=516bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10487:720..3090- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCGGGAGCGGGCACCGGGGTTAAGAAGAGGCAGCCGAAGAAGGAGAC
GGCGCGGCAAGCGGCGCTGGAGGCAAAGGAGAGAAAGGCCAGCGAGGAGG
CGGAGGCGAAGAAGGCCCGGGCAGCCGCCGCGGCCGCCGAAAGAGAAGCG
CAGAAGGTGAAGGACATCGAAGTTAAGAAGAAGATTGCCACGGCGGGGGC
GGCGGCCTCTGCAGCGAAACCGCCGCCGCCGCCGCCGCCGCCGCACGAGG
GTCACCAGGCGGCCTCCGCCAAGAAAACAACACGGGCGAGAGGTCGGGCA
GCGCCGCCGGCTACATCAAAGGCGAAGCCCGCCGCCGCCGCTGCTGCTGG
TGCTGCTGCCGGGGAGGGGGAGGGAAGGGGCTTGTCAAAGGAAGGGTTGA
TGAAGTTGACGGTGAAGGATTTGAGGGAGCGTTGTAAGGCGGCCGGGGTG
CCGACGTCGGGGAGGAAGGCGGACATCGTGGACCGACTTCTAGACGCGGG
CCTCGTTGCTCCGTAG
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