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Homology
BLAST of mRNA_Ecto-sp13_S_contig10475.452.1 vs. uniprot
Match: D7FYZ4_ECTSI (Mago-bind domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYZ4_ECTSI) HSP 1 Score: 678 bits (1749), Expect = 2.190e-236 Identity = 452/564 (80.14%), Postives = 465/564 (82.45%), Query Frame = 1
Query: 1 GFNSRSGGATRYVPPAFRTPTGGGDGGGPAAGHTRSLGEIDAGEGRRGTPRFLSAALFLLTAASGSPELFPRQPGVLGGAAAAEXXXXXXXXXXXXXXXADDVASGRDKSRSGADRTGGSNESGNDDPRQEAGSRDVE-SDNDWWTRLRLSQRSSRLARESSESEDPATTTKKEEEKPTGEDGAWVGLELRLRPSDVSYDEGQAATVDFLKGRVGDQVVSGEGREGAPQPAEDSQGPSARAEVEPPRALAAAKSPTRGXXXXXXXXXXXXXSNPEPERRAPEGVAASVSLPQQPEDXXXXXXXXXXXXXXXTVLVAVLVFGAELSKRDRAGLHGQAEKAGGVASASHGVGEGRFLALACRLGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTAEAHPDLFELLEKKQQPRQXXXXXXXXXXXXXXXTDRLNNTAKKAAGDETGATGAFSRASSGGSSGKRGATATVTGEATRQXXXXXXXXXXXXDCGVKPAALPLQEGVNCASGEGGADSPPRGEGLEERELAEQGREVGNKPFLLVEKCPW 1689
GFNSRSGGATRYVPPAFRTPTGGGDGGGPAAGHTRSLGEI+A EGRRGTPRFL AALFLLTAASGSPEL PRQPG LG A AA DVASGRDKSRSGADRTGGS ESGNDD RQEAGSRD+ SD+DWWTRLRLSQRSSRLARESSESEDPATTTKKE+ KPTGEDGAWVGLELRLRPSDVSYDEGQAA VDFLKGRVGDQ V GEGREGAPQPAEDS+GPSARAEVEPP XXXXXXXXXXXXX XXXXXXXXXXXXXXXTVLVAVLVFGAELSKRDRAGLH QAEKAGGVA++SHGVGEGRFLALACRLGG AGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTAEAHPDLF+LLEKKQQPRQXXXXXXXX TDRL+NTAKKAAGDE AT AF RASS GS G+RGATATVT +AT+ XXXXXXXXXXXX KPAALPLQE NCA G ADSPPRGE LEERELAEQGRE GN+PFL VEKCPW
Sbjct: 21 GFNSRSGGATRYVPPAFRTPTGGGDGGGPAAGHTRSLGEINADEGRRGTPRFLGAALFLLTAASGSPELSPRQPGGLGDAEAAADPAAAGGGG--------DVASGRDKSRSGADRTGGSTESGNDDRRQEAGSRDIGMSDDDWWTRLRLSQRSSRLARESSESEDPATTTKKEKGKPTGEDGAWVGLELRLRPSDVSYDEGQAAIVDFLKGRVGDQAVPGEGREGAPQPAEDSRGPSARAEVEPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVLVAVLVFGAELSKRDRAGLHSQAEKAGGVANSSHGVGEGRFLALACRLGGNAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTAEAHPDLFKLLEKKQQPRQXXXXXXXXPDVGC--TDRLDNTAKKAAGDEPEATEAFFRASSQGSFGERGATATVTEDATQXXXXXXXXXXXXXXXXAKPAALPLQESENCAKG--AADSPPRGEDLEERELAEQGREGGNEPFLPVEKCPW 566
BLAST of mRNA_Ecto-sp13_S_contig10475.452.1 vs. uniprot
Match: A0A6H5K144_9PHAE (Mago-bind domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K144_9PHAE) HSP 1 Score: 560 bits (1443), Expect = 1.810e-190 Identity = 370/499 (74.15%), Postives = 377/499 (75.55%), Query Frame = 1
Query: 1 GFNSRSGGATRYVPPAFRTPTGGGDGGGPAAGHTRSLGEIDAGEGRRGTPRFLSAALFLLTAASGSPE----------------------------------------------------LFPRQPGVLGGAAAAEXXXXXXXXXXXXXXXADDVASGRDKSRSGADRTGGSNESGNDDPRQEAGSRDVE-SDNDWWTRLRLSQRSSRLARESSESEDPATTTKKEEE-KPTGEDGAWVGLELRLRPSDVSYDEGQAATVDFLKGRVGDQVVSGEGREGAPQPAEDSQGPSARAEVEPPRALAAAKSPT-RGXXXXXXXXXXXXXSNPEPERRAPEGVAAS-------------VSLPQQPEDXXXXXXXXXXXXXXXTVLVAVLVFGAELSKRDRAGLHGQAEKAGGVASASHGVGEGRFLALACRLGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTAEAHPDLFELLEKKQQPRQ 1293
GF+S SGGATRYVPPAFRTPTGGGDGG PAAGHTRSLGEIDAGEGRR TPRFLSAALFLLTAASGS E L PRQPG LG AAAAE XXX DVASGRDKSRSGADRTGGSNESGNDDPRQE GSRD+ SD+DWWTRLRL QRSSRLARESSESED A KP GEDGAWVGLELRLRPSDVS+DEGQAA VDFLKGRVGDQ V G GREGAPQPAEDS+GPSARAEVEPPRA AAAKSPT XXXXXXXXX SNPE ERRAPEG VSLPQQPE XXXXXXXXXXXXX TVLVAVLVFGAELSKRDRAGLHGQAEKAGGV SASHGVGEGRFLALACRLGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTA+AHPDLF+LLEKKQQPRQ
Sbjct: 21 GFSSTSGGATRYVPPAFRTPTGGGDGGHPAAGHTRSLGEIDAGEGRRSTPRFLSAALFLLTAASGSAETRRVGGGQGQEEETGGSGAFETDRRRVAVLSLPLRSAALAAQEHLECESFRQLSPRQPGGLGDAAAAEATPDPTAAAXXXA----DVASGRDKSRSGADRTGGSNESGNDDPRQEPGSRDIGMSDDDWWTRLRLFQRSSRLARESSESEDRAXXXXXXXXXKPIGEDGAWVGLELRLRPSDVSHDEGQAAIVDFLKGRVGDQAVPGGGREGAPQPAEDSRGPSARAEVEPPRAPAAAKSPTGXXXXXXXXXXXRELDSNPEHERRAPEGXXXXXXXXXXXXXXXXXVSLPQQPEXXXXXXXXXXXXXXASTVLVAVLVFGAELSKRDRAGLHGQAEKAGGVTSASHGVGEGRFLALACRLGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHREIREVVAEGGPTADAHPDLFKLLEKKQQPRQ 515
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Model size | 2172 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Cds size | 1692 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462533.074463-UTR-Ecto-sp13_S_contig10475:1496..1968 | 1681462533.074463-UTR-Ecto-sp13_S_contig10475:1496..1968 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10475 1497..1968 - |
| 1681462533.08439-UTR-Ecto-sp13_S_contig10475:2002..2010 | 1681462533.08439-UTR-Ecto-sp13_S_contig10475:2002..2010 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig10475 2003..2010 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462533.0935063-CDS-Ecto-sp13_S_contig10475:2010..2494 | 1681462533.0935063-CDS-Ecto-sp13_S_contig10475:2010..2494 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10475 2011..2494 - |
| 1681462533.1050415-CDS-Ecto-sp13_S_contig10475:2765..2848 | 1681462533.1050415-CDS-Ecto-sp13_S_contig10475:2765..2848 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10475 2766..2848 - |
| 1681462533.1127656-CDS-Ecto-sp13_S_contig10475:3557..3835 | 1681462533.1127656-CDS-Ecto-sp13_S_contig10475:3557..3835 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10475 3558..3835 - |
| 1681462533.1268644-CDS-Ecto-sp13_S_contig10475:3874..4517 | 1681462533.1268644-CDS-Ecto-sp13_S_contig10475:3874..4517 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10475 3875..4517 - |
| 1681462533.1430225-CDS-Ecto-sp13_S_contig10475:4676..4880 | 1681462533.1430225-CDS-Ecto-sp13_S_contig10475:4676..4880 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10475 4677..4880 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10475.452.1 >prot_Ecto-sp13_S_contig10475.452.1 ID=prot_Ecto-sp13_S_contig10475.452.1|Name=mRNA_Ecto-sp13_S_contig10475.452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=564bp
GFNSRSGGATRYVPPAFRTPTGGGDGGGPAAGHTRSLGEIDAGEGRRGTP RFLSAALFLLTAASGSPELFPRQPGVLGGAAAAEAAADPAGAGAGAGAGA DDVASGRDKSRSGADRTGGSNESGNDDPRQEAGSRDVESDNDWWTRLRLS QRSSRLARESSESEDPATTTKKEEEKPTGEDGAWVGLELRLRPSDVSYDE GQAATVDFLKGRVGDQVVSGEGREGAPQPAEDSQGPSARAEVEPPRALAA AKSPTRGEGEGGGGGPRELESNPEPERRAPEGVAASVSLPQQPEDDDHLR RAKGGGGGASTVLVAVLVFGAELSKRDRAGLHGQAEKAGGVASASHGVGE GRFLALACRLGGRAGAVELELSPEKAELARSLFRLAQQEYHSRFECLSHR EIREVVAEGGPTAEAHPDLFELLEKKQQPRQRQGQGQRQRQPDCDCTDRL NNTAKKAAGDETGATGAFSRASSGGSSGKRGATATVTGEATRQQEHHQCG GGGGGDCGVKPAALPLQEGVNCASGEGGADSPPRGEGLEERELAEQGREV GNKPFLLVEKCPW* back to topmRNA from alignment at Ecto-sp13_S_contig10475:1497..4880- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10475.452.1 ID=mRNA_Ecto-sp13_S_contig10475.452.1|Name=mRNA_Ecto-sp13_S_contig10475.452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10475:1497..4880- (Ectocarpus species13 EcNAP12_S_4_19m) GGGTTCAACTCGAGATCCGGAGGGGCTACCCGCTACGTTCCGCCAGCGTT
CCGAACCCCCACGGGTGGCGGTGACGGCGGCGGCCCAGCAGCAGGTCACA
CCCGATCACTGGGCGAAATCGACGCAGGCGAGGGCAGGCGCGGCACACCG
CGATTCCTGAGCGCAGCCCTCTTCCTGCTAACGGCAGCGTCCGGGTCCCC
TGAGGTGAGGCGGGCGGGAGGGGGGCAAGGACAAGAGGAGACAGAGACAG
GTGGGAGCGGCGCTTTCGAGACGGATCGCCGCCGCGTCGCGGCGCTCAGC
TTGCCGCTCCGCCCCGCCGCGCTAGCGGCCCGAGAACACCTCGGGTGCGA
GAGCTTCCGTCAGCTCTTTCCACGACAACCCGGTGTTCTTGGCGGTGCCG
CTGCTGCTGAGGCTGCCGCAGACCCTGCTGGTGCTGGTGCTGGTGCTGGT
GCTGGTGCTGATGACGTAGCGAGCGGTCGCGACAAGTCTAGAAGCGGTGC
CGACAGGACGGGTGGTAGCAACGAGAGCGGCAACGACGACCCACGGCAAG
AAGCGGGGAGTCGCGACGTCGAGAGCGACAATGATTGGTGGACCAGGCTA
CGGCTGTCCCAGCGGAGCAGCCGGCTCGCGAGGGAGAGCTCCGAGAGCGA
GGACCCGGCAACCACCACGAAGAAGGAAGAAGAAAAGCCTACCGGAGAAG
ATGGTGCTTGGGTCGGACTCGAGCTCCGACTGCGGCCGAGCGACGTCTCG
TACGACGAAGGCCAGGCCGCGACCGTCGACTTCTTGAAAGGGAGGGTCGG
GGACCAGGTTGTGTCGGGGGAGGGGAGGGAAGGCGCCCCGCAGCCTGCAG
AAGATTCGCAGGGACCCTCTGCGCGCGCGGAGGTAGAGCCGCCTCGCGCG
CTGGCAGCGGCGAAGAGCCCAACAAGAGGGGAAGGGGAAGGAGGAGGAGG
AGGACCGAGGGAACTCGAAAGCAATCCTGAGCCTGAGAGAAGGGCACCAG
AAGGCGGTGGCGATGGTGGAGCAGCTGGGGCGGCGGCAGCTGTAGTCGCC
GCCAGCGTGTCACTGCCGCAGCAGCCGGAGGACGACGACCATCTCCGCCG
AGCAAAAGGAGGAGGAGGAGGAGCGTCGACGGTCCTGGTGGCCGTGCTTG
TTTTCGGCGCCGAGCTCTCGAAGCGGGACCGCGCGGGTCTGCACGGCCAG
GCCGAGAAGGCCGGCGGGGTCGCGAGCGCCAGCCACGGGGTGGGGGAGGG
GAGATTCTTGGCCCTCGCTTGCCGGCTTGGGGGAAGGGCAGGGGCCGTCG
AGCTCGAGCTTTCTCCGGAAAAGGTGATGATGAGAATTATTGGGACGGTT
GGGAGTGCTGCCATGAGATCGTGGTGGTGGTGGTAGCGCAACATTGACGG
CAGCGACAGAGTTTTCGTTTTTTTCTGCTGACCGGCTGCTTGACGGGTGT
TGCTGCGACGCTTTGGTGCTTGCGGTCACACTGGAAGTGGCAGATCGGTG
CTTCCCACGTTCTTGAGCGGAGTGAGTTTTCGACCTTCAGCAGTATTCAT
AGCCATACCACGTTTTGTTCAGGGATCGACCACTTGGCATGCGAGGTGCT
CGCGCGTGATACAGAAGGTAGAGGCCACGTATGTTTAGGCTCCATGTTTT
TTTAAGCAGACCGCCCAACACTCCTTTGTCTACCTCAGTTGCAGGGAATA
GCCAACCACCGCAGGAGGTGGTTGGTTGGGTGCAGAATTCATTCTAAATG
AGGCTTGAATTGTGCACTACACAGGAGCCCTCTCGGACAATCCGGTTGAA
ACGGAGATTGATCACATTCCAGTTTTATCGTTATATGCTGCTTTGGGCGT
GTCTGGTTGCCGATCATACGCATACGCATACGATGGCCTTTTCCTAGTAA
GTGACGGTCTATCCATGAGTCTTGCTTGTCTGGAAAAAAATTCCCATTAA
ACAAATGGTCGACCAGAGTCTGAAGGTCTAGGGCGCATTTCTTTTCCTCC
GGCGCCATCTCCACGTCTTGTCACACCTTCAGGCGGAGTTGGCAAGGAGC
CTGTTTCGACTCGCTCAGCAGGAGTACCATTCTCGGTTCGAGTGCTTGAG
CCACCGGGAGATCAGGTCAGCAGATTGTTTTTTTACGTTTTCCGACGGTT
GTTTTTTTTTTCAATCGGGGAGAGATGGTGTTCCGCTTCCATATCTGGGC
CGTTCCCTCTAGCCACCCCTCCTCTGGCTTACTGCAGCAGGGTTGTGGGG
TTTCATGGCCCCAGAGGTGGCTGTTCACGGCCATGATTTCCGCCGCACTA
TACCTCCGCAACCCCGCGATGTTGCGCCCTCACCTTACTTGAATGCGTCT
GCCTTGTTTTGTTGCCGACGCCCCCCCGCGTGCCAGAGAGGTTGTCGCTG
AAGGAGGCCCTACCGCCGAAGCCCACCCCGATCTCTTCGAGCTCCTTGAA
AAGAAGCAGCAGCCGCGGCAGCGACAAGGACAAGGACAACGACAACGACA
ACCAGATTGCGATTGTACCGACCGACTGAACAACACCGCCAAGAAGGCAG
CAGGCGACGAGACCGGGGCGACGGGGGCGTTTTCCCGGGCGTCGTCGGGA
GGTTCTTCCGGGAAACGCGGTGCTACCGCTACCGTTACAGGAGAAGCAAC
CCGGCAACAAGAGCATCATCAATGTGGTGGTGGTGGTGGTGGTGATTGTG
GTGTAAAGCCGGCGGCGTTACCACTACAAGAGGGTGTGAATTGCGCAAGT
GGAGAAGGAGGGGCAGACTCTCCTCCGCGAGGGGAAGGCCTCGAGGAGCG
AGAGTTGGCGGAGCAAGGGAGGGAGGTGGGCAACAAGCCGTTTCTCCTTG
TCGAGAAATGTCCCTGGTAGATAAGCGAGCGGGGGCGGCGGGGTGCCTAC
TTATCTTGGAAGTTGCGTCTATGTTTTCACTCTGTCGATGTGTGCGTTGT
TTACGTTTGTTTCGGTTCGCGACAGTTTCGGCAGCTTGGGTGGGCTAGAA
ACAAACGGATTGCGCCTCTGCCATACACATAGCCGGCCGTGCGCATAGCC
GCCAGTACACGGTGCGGTTTGCTGACCGTTTGAGGGTAGTGGGTGCCCAT
GCGCTTGCTCCTTGCTGTAACCCGGAGGATGTGCTGCTCGGGGTTGCGGA
ACCAACTTTTTGTGCATTCGAGATTTCTATATGTTCACGAAAGAGAGTCG
CCTCTAGGTGCATGTGTGCGCGTTCCAGACTTTAGCCGTAGCATGCTGTC
TCAGAGGCTTCGGCGTTCTTCATCGGTTTGTCCTGAGCGTATATACTCTG
GTCAAGGTGACAACCGTTACAAAGCTTGTGCTATTCATGGACGGCAGTCC
CGAAAGGAGGAATGGAGCATTACATTAAACGAGC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10475:1497..4880- >mRNA_Ecto-sp13_S_contig10475.452.1 ID=mRNA_Ecto-sp13_S_contig10475.452.1|Name=mRNA_Ecto-sp13_S_contig10475.452.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10475:1497..4880- (Ectocarpus species13 EcNAP12_S_4_19m) GGGTTCAACTCGAGATCCGGAGGGGCTACCCGCTACGTTCCGCCAGCGTT CCGAACCCCCACGGGTGGCGGTGACGGCGGCGGCCCAGCAGCAGGTCACA CCCGATCACTGGGCGAAATCGACGCAGGCGAGGGCAGGCGCGGCACACCG CGATTCCTGAGCGCAGCCCTCTTCCTGCTAACGGCAGCGTCCGGGTCCCC TGAGCTCTTTCCACGACAACCCGGTGTTCTTGGCGGTGCCGCTGCTGCTG AGGCTGCCGCAGACCCTGCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCT GATGACGTAGCGAGCGGTCGCGACAAGTCTAGAAGCGGTGCCGACAGGAC GGGTGGTAGCAACGAGAGCGGCAACGACGACCCACGGCAAGAAGCGGGGA GTCGCGACGTCGAGAGCGACAATGATTGGTGGACCAGGCTACGGCTGTCC CAGCGGAGCAGCCGGCTCGCGAGGGAGAGCTCCGAGAGCGAGGACCCGGC AACCACCACGAAGAAGGAAGAAGAAAAGCCTACCGGAGAAGATGGTGCTT GGGTCGGACTCGAGCTCCGACTGCGGCCGAGCGACGTCTCGTACGACGAA GGCCAGGCCGCGACCGTCGACTTCTTGAAAGGGAGGGTCGGGGACCAGGT TGTGTCGGGGGAGGGGAGGGAAGGCGCCCCGCAGCCTGCAGAAGATTCGC AGGGACCCTCTGCGCGCGCGGAGGTAGAGCCGCCTCGCGCGCTGGCAGCG GCGAAGAGCCCAACAAGAGGGGAAGGGGAAGGAGGAGGAGGAGGACCGAG GGAACTCGAAAGCAATCCTGAGCCTGAGAGAAGGGCACCAGAAGGCGTCG CCGCCAGCGTGTCACTGCCGCAGCAGCCGGAGGACGACGACCATCTCCGC CGAGCAAAAGGAGGAGGAGGAGGAGCGTCGACGGTCCTGGTGGCCGTGCT TGTTTTCGGCGCCGAGCTCTCGAAGCGGGACCGCGCGGGTCTGCACGGCC AGGCCGAGAAGGCCGGCGGGGTCGCGAGCGCCAGCCACGGGGTGGGGGAG GGGAGATTCTTGGCCCTCGCTTGCCGGCTTGGGGGAAGGGCAGGGGCCGT CGAGCTCGAGCTTTCTCCGGAAAAGGCGGAGTTGGCAAGGAGCCTGTTTC GACTCGCTCAGCAGGAGTACCATTCTCGGTTCGAGTGCTTGAGCCACCGG GAGATCAGAGAGGTTGTCGCTGAAGGAGGCCCTACCGCCGAAGCCCACCC CGATCTCTTCGAGCTCCTTGAAAAGAAGCAGCAGCCGCGGCAGCGACAAG GACAAGGACAACGACAACGACAACCAGATTGCGATTGTACCGACCGACTG AACAACACCGCCAAGAAGGCAGCAGGCGACGAGACCGGGGCGACGGGGGC GTTTTCCCGGGCGTCGTCGGGAGGTTCTTCCGGGAAACGCGGTGCTACCG CTACCGTTACAGGAGAAGCAACCCGGCAACAAGAGCATCATCAATGTGGT GGTGGTGGTGGTGGTGATTGTGGTGTAAAGCCGGCGGCGTTACCACTACA AGAGGGTGTGAATTGCGCAAGTGGAGAAGGAGGGGCAGACTCTCCTCCGC GAGGGGAAGGCCTCGAGGAGCGAGAGTTGGCGGAGCAAGGGAGGGAGGTG GGCAACAAGCCGTTTCTCCTTGTCGAGAAATGTCCCTGGTAG back to top
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