mRNA_Ecto-sp13_S_contig10472.451.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10472.451.1
Unique NamemRNA_Ecto-sp13_S_contig10472.451.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 395 bits (1015), Expect = 4.160e-133
Identity = 191/201 (95.02%), Postives = 193/201 (96.02%), Query Frame = 1 
Query:    4 THVLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVRFAVKISEILSHIEFFKCKFVEDPAEMVKHMTGRSKVSAGPVEFIKNLVRRGE 606
            THVLDL GPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVF VFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAE+PGLHPLAVGPGAVGLVEP VRFAVKISEILSHIEFFKCKFVEDP EMVKHMTG  KVS GPVEF+K LVRRGE
Sbjct:  412 THVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEVPGLHPLAVGPGAVGLVEPVVRFAVKISEILSHIEFFKCKFVEDPVEMVKHMTGHRKVSVGPVEFLKKLVRRGE 612
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BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 372 bits (954), Expect = 1.100e-126
Identity = 180/202 (89.11%), Postives = 188/202 (93.07%), Query Frame = 1 
Query:    1 QTHVLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVRFAVKISEILSHIEFFKCKFVEDPAEMVKHMTGRSKVSAGPVEFIKNLVRRGE 606
            +THVLDL GPIIDPIGYRLDLSPYFDEEDIPYMGKANAM GPRNMALNI CYSVVF VF+VHPSVALKLSMVYYG RVVTDYVVL TEPARRKLGQMTIVHTPWSAVIHAGLTILGY CHR+ LYTAEIPGLHPLAVGPGAVGLVEP VRFAVKISEILS IEFF+CKFV+DP +MVKHMTGR KVS GPVEF+KNL+ RGE
Sbjct:  204 KTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVALKLSMVYYGGRVVTDYVVLFTEPARRKLGQMTIVHTPWSAVIHAGLTILGYYCHRSALYTAEIPGLHPLAVGPGAVGLVEPVVRFAVKISEILSDIEFFRCKFVQDPVQMVKHMTGRRKVSVGPVEFLKNLLSRGE 405
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BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE)

HSP 1 Score: 251 bits (642), Expect = 1.590e-81
Identity = 113/170 (66.47%), Postives = 141/170 (82.94%), Query Frame = 1 
Query:    1 QTHVLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVRFAVKISEILSHIEFFKCKFV 510
            +TH+LDL GP++DPIGYRLDL+ Y+DEE+IPYMG ANAMDGP N+A+NIFCY++VF V + HP ++LK++M+Y+GARVVTDY+V+V EP RRKLG MT VHTPWS +I AGLT+LG+  HR+ L+TA + G HPL VGPGAVGLVEP VR AV +SE+L  IEFF   FV
Sbjct:   76 KTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLSLKMAMIYFGARVVTDYLVMVAEPIRRKLGLMTAVHTPWSGLIQAGLTVLGFSYHRHTLHTASVTGFHPLVVGPGAVGLVEPLVRVAVWVSEVLHRIEFFTVNFV 245
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BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.540e-76
Identity = 111/170 (65.29%), Postives = 136/170 (80.00%), Query Frame = 1 
Query:    1 QTHVLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIVHTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVRFAVKISEILSHIEFFKCKFV 510
            +TH+LDL GP++DPIGYRLDL+ Y+DE +IPYMG  NAMDGP N+A+NIFCY++VF V + HP +ALK +MVY+GARVVTDY+V+  EP RRKLG MT VHTPWS +I AGLT+LG+  HR+ L+TA + G HPL VGPG VGLVEP VR AV +SE+L  IEFF   FV
Sbjct:  211 KTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLALKTAMVYFGARVVTDYLVMTAEPIRRKLGLMTAVHTPWSGMIQAGLTVLGFYYHRHTLHTASVTGFHPLVVGPGVVGLVEPLVRVAVWVSEVLHRIEFFTVNFV 380
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BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.680e-15
Identity = 61/164 (37.20%), Postives = 85/164 (51.83%), Query Frame = 1 
Query:   10 VLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCY---SVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMT-IVHTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVRFAVKISEILSHIE 489
            + DLLGP+IDPIGY+++L  Y           AN M GP N+ + +  Y   + VFF F V P  AL ++ V  GARVVTDY+V    P R + G    + + P SAVI+  L  LG+  H N        GL    VG  A    +PF+ F   +++ L+H +
Sbjct:  288 LFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGYVSSASVFFHFFVDPQQALTITFVLLGARVVTDYIVAALNPVRWRFGMSKKLDNMPISAVIYLLLASLGFIFHGNA-------GL----VGDFA---CKPFIAFLGLLNKGLNHFQ 427
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10472.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JP85_9PHAE4.160e-13395.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP1_ECTSI1.100e-12689.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JS93_9PHAE1.590e-8166.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP3_ECTSI1.540e-7665.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ41_ECTSI2.680e-1537.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10472contigEcto-sp13_S_contig10472:2017..5464 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size609
Hectar predicted targeting categoryother localisation
Exons5
Cds size609
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462533.0107594-CDS-Ecto-sp13_S_contig10472:2016..21811681462533.0107594-CDS-Ecto-sp13_S_contig10472:2016..2181Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10472 2017..2181 -
1681462533.0231023-CDS-Ecto-sp13_S_contig10472:2963..31321681462533.0231023-CDS-Ecto-sp13_S_contig10472:2963..3132Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10472 2964..3132 -
1681462533.0313094-CDS-Ecto-sp13_S_contig10472:3796..38671681462533.0313094-CDS-Ecto-sp13_S_contig10472:3796..3867Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10472 3797..3867 -
1681462533.039285-CDS-Ecto-sp13_S_contig10472:4741..48521681462533.039285-CDS-Ecto-sp13_S_contig10472:4741..4852Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10472 4742..4852 -
1681462533.0471094-CDS-Ecto-sp13_S_contig10472:5371..54641681462533.0471094-CDS-Ecto-sp13_S_contig10472:5371..5464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10472 5372..5464 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10472.451.1prot_Ecto-sp13_S_contig10472.451.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10472 2017..5464 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10472.451.1

>prot_Ecto-sp13_S_contig10472.451.1 ID=prot_Ecto-sp13_S_contig10472.451.1|Name=mRNA_Ecto-sp13_S_contig10472.451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=203bp
QTHVLDLLGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIF
CYSVVFFVFQVHPSVALKLSMVYYGARVVTDYVVLVTEPARRKLGQMTIV
HTPWSAVIHAGLTILGYCCHRNVLYTAEIPGLHPLAVGPGAVGLVEPFVR
FAVKISEILSHIEFFKCKFVEDPAEMVKHMTGRSKVSAGPVEFIKNLVRR
GE*
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mRNA from alignment at Ecto-sp13_S_contig10472:2017..5464-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10472.451.1 ID=mRNA_Ecto-sp13_S_contig10472.451.1|Name=mRNA_Ecto-sp13_S_contig10472.451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3448bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10472:2017..5464- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTCATGTGCTGGACCTGCTCGGGCCCATCATTGATCCCATCGGCTA
CCGCCTGGATCTCAGCCCGTACTTCGATGAGGAGGACATCCCGGTAAGCT
TCTCGCACTTGTTGTTCTTGTTCTTGTTCTTGTTCTTGTTCTTGTTATGA
TTGTTGTAGTTCTTGTTCGTCGTCCTGTTGTTGCGAGTGCTGCCGTTGTT
CGCGCTGGTTGTCCCTATCGTGTATAGGGCTAGGCATAGCGAGATGTTTT
GCAGGGGGTTCGCTCCCGAGTCGTCGTTCGGCCTCGACTCGGTCGAAGTC
GTACAAGCGTCCTCTCTGTCATCGCTCATTTACGCTTGCGTCTTGGAATG
TTTGCAAGAAATGGCCTCGAAATTGGCACTACTCACAGGAACACGAGAAC
GCATCTCGGCCGCTCTCTTGTGCACCTTCATCGCTTGTTTTTTTTACGCT
TTGTGTTCGCATTTCCGTTGCTGCTGTGCTGTTCGTATGCCTTCGCTTGT
GCTCAACCTGGTGCTGATGGTAATTTCAGCAATGGATCCTTCCGCGTGGA
CTAGTGATGACAACACCCTGCCCATGCTCTTGTTGTTCTCGTCATTGCTG
GTGATGGTTCAGTACATGGGCAAGGCCAACGCGATGGACGGTCCGCGGAA
TATGGCTCTCAACATCTTTTGCTACAGCGTCGTCTTTTTCGTGTTCCAAG
TGCACCCTTCCGTGGCCCTCAAGGTAACGAGTGCCTTCCCCTGTTGTGAC
GACGCTCACACGGATGAAACGACTGCTACAGCATGACCGTCGTCCGCAAA
GCTGCGCACACCATGGCTCCCTGCGAGTAGTCGACCTCTCCCTCGTCGGG
GATTCGTTTATACGCGGCGTGGATTCTGCAGCGTTTGTGTTCGGTGTGAT
TCCCATGTGAACTGACTCCGCCTGTGAGTCGCCATGTACTTTGACGCGAC
TACCTACGGGGTGCGCATGGAGATGCTGCTTGGGTGGGATAGTATGCAGA
GTTTCTCTCTAGCTAACCTAAGCGTTGCATTAACAATTTATTCATCATAG
CGTGTTTTGGTTCGGATCCATACCTGCGCGGGCAGTCCCCCAGAGGATCT
ACGCGTTGCAGTAATGAGTGAATCACCATAACGTGTTGCGGTTGTGGTTC
GGATCCATATCTGTACGGGCGGTCCTCCAGAGGATTCTTGCCACGTTTGC
AGAACGACTATAATTCCCTTGCGTTTCAAGCCCAGACCGAGAAATGGTTT
TGAACGTGTTTTCATGTATCTGTTTGGTGTTTCTCAATGCCTGTCACGAC
TTGCGTAGGGAAGGAAATACCTAAAAAAATCGGTTTAGACTGGTCGTGCA
GGCTCGCCACAGCCCCCCTGCTAGTTTCGTGTTAGTAACTCACCTTCCTT
GTGACCCTAAGCTGGATTTTTTATTTTGGAAAGGAGGTTTGTGGACACGA
GACGATATCGTCGTCACCAACACAAACACCGCCGTCACAACCACCACACC
AATAGCAACGGCAAGCCAACAATGGCGATTGAGTTGAGCGCCTTTCGTGC
TTCGTGTTCGCCTCGTTTTTGTCCTGCTGGGCGCTACTACTGTGCAGCTC
TCCATGGTGTACTACGGTGCTCGAGTGGTGACGGACTACGTTGTCCTTGT
CACCGAGCCAGCACGCAGGTACTTGACCCTCCTCGAGAAACCTTTGCTAT
CATTGTTGCTTGCCACACCGGTAAGTTCTACCGTGGTTGCCTCCGTCGCT
TGTGGTCCCGAGAAAAGGGAGCCGATCATTTTCTTTCGTGCGTCAATCAT
CATGTGTTGGCCTCGGAGTTGTGGCCCGTTGTTTTGTCTACAGGAGTAGA
GAGCCCGTTTCGTGGGGACAAATGTCGGGTTCTGGGGGCGCATCACCAAG
TGGCACCAACCCTATATTTTCACACAAGTCCTGCTCTTGCTTCCGTGTTG
TTGTGTCTTGCTTCGGCGGACAGTGCGGGTTGACATGTTCGTTTGTGCTG
CCATTGCCGAAAAAAACGAGAGTTCGTGCGTCCGCCCTTCATTCCCTCTA
CTGTGCATGGCTAAGTGTCTTCCTTGCTTGTGCGCGTTGTCTCCAACGCT
GGTTGGTTTTCCCATGCATGCGTGATCCCCTCCTCCACTGGCCTTGACAA
AGCATTGACTAGTCTCGAAGATGAAGCGAGACAACACCCCTTGCTTCAGA
GAAGTCCCACACCAAAACCAAGCTAGAATGAATGATGTTTCGTCGCGAAA
ACGGTTGTGATGATGTCCTACGAGAAGTGAACGCAAGCACGACACATATC
TTCCCTCTCACTCCCTCTCCACGAAACCAAAGGAAACTTGGGCAAATGAC
GATAGTGCACACGCCTTGGAGTGCCGTCATCCACGCCGGACTCACGATCT
TGGGCTACTGCTGCCACAGAAATGTTCTGTACACAGCCGAAATCCCGGGA
TTGCACCCGCTCGCAGTGGGACCAGGAGCCGTGGGGCTAGTGGAGCCTTT
CGTGAGTGGAGGCGTTTTGCCTTTCTTTGTGAAACACCTGGTCGAGGTCA
TCAAGTTTGTTGGGCGTTGGTGTTCGTTTGGCTGCCTCGTACCGCCGAAA
GTGCTGCCAGCTGAAAGTGCTGCCACGTATTTTGTGAAGCGGGTCATTCC
TGGGATTCGCGCCTATAGGTCCCAGACTACACTCTGTATGTGCGCACGAT
TACGTCTCTGAGAAGGCCGTGACGAGTCCCGAGTACATTTCGTGGTGAAG
CACGTTTGTATGCGGTGGCCGTGCCATGGAATAGAGAAATTCATGCACGC
ATTGGCTAACTCGGGAAGTGGATGAGGCAAAGGGTGCAGACGTATTTATA
GCGACCTGCTTTGCCGCGTCGCTGCCACCTCTCCGTCTGTTTGTTGCAGC
TGCTGGTGCAGTTCTTAGCAGACGTTTGTCCGAATACGCACGTGTCGGGT
TGCAGCGTGTTGTTTTATGCGTCGCGACTTGGAACTAAAGTATAGGCCGG
CTGCCTGCTGGCCTATCGTCGTCCTCCCCGCCAGTTGAAGTCGACTACCG
CTTTCGAAAATATGTCGGCTGGGATTTCCCTCAAGTATCTAAGTTTGTGA
GTTTTGCGCCAGTCATCATTTTGCAGAGTCCGGGTTTCGCTTCACGGTGA
GCAGCTTCGAGTCCTTGCGTGATCTTGCTTTCAGACCCCAGTTTATCTCA
TCCATTGCTGCTTTCGACCAACAATGGTACCCCGCTTCTACCGCAAAATG
TGTTTGCTGTTGGTTCACCGTCTTTTTTTTCAGGTTCGGTTTGCCGTCAA
GATCAGCGAGATCCTGAGCCACATCGAGTTCTTCAAGTGCAAGTTCGTCG
AGGACCCTGCAGAGATGGTAAAACACATGACTGGCCGTAGCAAGGTTTCG
GCGGGCCCTGTGGAGTTTATCAAAAACCTCGTTCGCCGTGGAGAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10472:2017..5464-

>mRNA_Ecto-sp13_S_contig10472.451.1 ID=mRNA_Ecto-sp13_S_contig10472.451.1|Name=mRNA_Ecto-sp13_S_contig10472.451.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10472:2017..5464- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACTCATGTGCTGGACCTGCTCGGGCCCATCATTGATCCCATCGGCTA
CCGCCTGGATCTCAGCCCGTACTTCGATGAGGAGGACATCCCGTACATGG
GCAAGGCCAACGCGATGGACGGTCCGCGGAATATGGCTCTCAACATCTTT
TGCTACAGCGTCGTCTTTTTCGTGTTCCAAGTGCACCCTTCCGTGGCCCT
CAAGCTCTCCATGGTGTACTACGGTGCTCGAGTGGTGACGGACTACGTTG
TCCTTGTCACCGAGCCAGCACGCAGGAAACTTGGGCAAATGACGATAGTG
CACACGCCTTGGAGTGCCGTCATCCACGCCGGACTCACGATCTTGGGCTA
CTGCTGCCACAGAAATGTTCTGTACACAGCCGAAATCCCGGGATTGCACC
CGCTCGCAGTGGGACCAGGAGCCGTGGGGCTAGTGGAGCCTTTCGTTCGG
TTTGCCGTCAAGATCAGCGAGATCCTGAGCCACATCGAGTTCTTCAAGTG
CAAGTTCGTCGAGGACCCTGCAGAGATGGTAAAACACATGACTGGCCGTA
GCAAGGTTTCGGCGGGCCCTGTGGAGTTTATCAAAAACCTCGTTCGCCGT
GGAGAGTAG
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