mRNA_Ecto-sp13_S_contig10445.425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10445.425.1
Unique NamemRNA_Ecto-sp13_S_contig10445.425.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI)

HSP 1 Score: 428 bits (1101), Expect = 4.190e-149
Identity = 216/232 (93.10%), Postives = 222/232 (95.69%), Query Frame = 3
Query:   99 MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGGLP 794
            MSRADT LS S+AAPSQSGVRSMQT+HRTTLMLRAKVVVVGDACVGK+SVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALP+TSAPLPGVVIANKSDLREGGINARAVVETK     EG+LFALQNGLDYFETSAAGAK IDAPFHHMA+ FHETYEKTIEGAEGEGGLP
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK-----EGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGLP 227          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 4.970e-110
Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 3
Query:   99 MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKA 623
            MSRADT LS S+AAPSQSGVRSMQT+HRTTLMLRAKVVVVGDACVGK+SVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPS SAPLPGVVIANKSDLREGGINARAVV T+A
Sbjct:    1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTEA 175          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA)

HSP 1 Score: 254 bits (648), Expect = 2.800e-80
Identity = 123/214 (57.48%), Postives = 165/214 (77.10%), Query Frame = 3
Query:  147 QSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGG 788
            +S +RSM+++H+  LMLR KVV+VGDACVGKS++VQMF  GG  YPKNY+MT GV F VKQV +P+T+  VEL+LFDC GQ +FN+ EQ    +EN ++V VV+DV NRDSF+SC +WLQGVR+   S+   +PGV++ANKSDLREGGIN+RA V  +     EG+ FA +N L++FETSAA AK++DAPF+ +AS+FH+ YE+T++ AE   G
Sbjct:   26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRSTRQSSM--IPGVLVANKSDLREGGINSRAAVSDE-----EGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA)

HSP 1 Score: 250 bits (639), Expect = 2.360e-79
Identity = 123/209 (58.85%), Postives = 159/209 (76.08%), Query Frame = 3
Query:  165 MQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGGL 791
            M+  H+  LMLR+KVV+VGDA VGK+++ QM  S GH+YPKNY+MT  VDF VKQ+++PE +  VELFLFDC GQGVFNKL+  A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA  P T+AP+PGV+I +K+DLREG   +RAVV+ +     EG  FA +NGL YFE SAA +  ++APF HMA +FH  YE ++  AEG  G+
Sbjct:    1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRP-TAAPMPGVLIGSKADLREG---SRAVVDAQ-----EGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA)

HSP 1 Score: 221 bits (564), Expect = 6.110e-68
Identity = 121/218 (55.50%), Postives = 150/218 (68.81%), Query Frame = 3
Query:  123 SASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
            S S A   QS VRSM++ HR+ LMLR KVVVVGDA VGKS+++ MF SGG  +PK Y+MT  VDF VKQV +PE+ + VEL+LFDC GQ +FN++E   A+YENA+F+C+V+DVSN  SFESCG+WLQ V  + PS    LPGV+IANK DL  GG   R VV T+     +GQ FA  N L YFETSA    + D PF H+A  F + YE TI  A+
Sbjct:    4 SKSSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQ-----KGQEFASANNLAYFETSALEG-EFDEPFRHIAIEFAKKYEDTIAHAQ 209          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA)

HSP 1 Score: 219 bits (558), Expect = 4.580e-67
Identity = 105/213 (49.30%), Postives = 154/213 (72.30%), Query Frame = 3
Query:  147 QSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEG 785
            QSG+RSM+TSH+T ++LR K+++VGDACVGK+++ Q F SGG  YPKNY+MTIG +F VKQV +PET+ +VELF++DC GQ +FN+L+  + YYENA+ V VV++V+NRDS  SC +W+ GV+A + ++  PL G  + NK + R+G I++RA V+     + E +  A   G+ YFETSAA    +DAPF ++A  F+  YE+T++   G+G
Sbjct:    2 QSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVD-----ILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ-TTGQG 207          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA)

HSP 1 Score: 211 bits (537), Expect = 1.140e-63
Identity = 101/209 (48.33%), Postives = 151/209 (72.25%), Query Frame = 3
Query:  150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
            SG+RSM + H++  +LR K+V++GD+CVGKSS++Q+F+SGG  YPKNY+MTIG DF VKQV +P+T+ VVEL++FDC GQ +FN+LE  + YYENAA V VV+D+ N+++ +S  +WL G+++A+ S  + L GV++ NKSD R+G +++RA V  +     + Q F+   GL YFE SAA    +  PF H+A+ F++ YE T+  A+
Sbjct:   14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAV-SNPSDLIGVLVGNKSDYRDGSVDSRAEVVKE-----DAQRFSKDLGLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA)

HSP 1 Score: 206 bits (525), Expect = 6.780e-62
Identity = 110/215 (51.16%), Postives = 145/215 (67.44%), Query Frame = 3
Query:  132 IAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
            +  P +S +RSM+T+HRT LMLR KVVVVGDA VGKS+++ MF SGG  YPK Y+MT  VDF VKQV +P+T + VEL+LFDC G  VFN++E+ A+ Y+ A F+ VV+DV+  DSF SC +W+QGVR         LPGV++ANK DL E     R VV+ +      G+ FA +NGL YFETSA    + + PF H+A  F + YE+T+  AE
Sbjct:   21 VPEPMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQ-----RGRDFAKENGLVYFETSALQG-NYEGPFRHVAMEFAKKYEETVARAE 221          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S2RIT4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIT4_9STRA)

HSP 1 Score: 201 bits (512), Expect = 1.170e-59
Identity = 105/210 (50.00%), Postives = 141/210 (67.14%), Query Frame = 3
Query:  150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLRE-GGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
            SG+RSM+TSHR  LMLR KV VVGDACVGK+++V++F    + YPKNY MT    F VKQV + +T + VEL+LFDC GQ VF+  E   + +EN AFV  V+DVSN++SF+S   WL  VR+  P  + PLPG+++ANK DLRE     +RAVV T+     +G+  A   GL++ E SAA   D D PFH++A  FH+ Y++T+  AE
Sbjct:   35 SGLRSMETSHRPLLMLRCKVAVVGDACVGKTALVELFHK--NKYPKNYQMTSWTSFCVKQVNIKDTSAAVELYLFDCGGQSVFSATEANHSLFENTAFVMCVYDVSNKESFDSVRTWLSKVRSRRPPNTPPLPGIIVANKIDLREEDDFMSRAVVTTE-----QGEALAKAEGLEFCEVSAAQQLDHDKPFHYIAEEFHKKYQETVRRAE 237          
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL)

HSP 1 Score: 199 bits (507), Expect = 1.590e-59
Identity = 97/208 (46.63%), Postives = 146/208 (70.19%), Query Frame = 3
Query:  150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGA 773
            SG+RSM+T+H++T +LR KV +VG+A VGK++VVQ+ KS GH++PKNY+MT  V+   K + +P+T+ VVEL+LFDC GQ +FN+L+ G  +Y+ A+   VVFDV+N++SF+SC +W Q VR A P+ +  +PGV++ANK+DLR    N R  + TK     E + FA +N + +FE SA     ++APF ++A  FH+ Y+ T + A
Sbjct:    2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTK-----EAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJQ1_ECTSI4.190e-14993.10IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus s... [more]
A0A6H5KZL0_9PHAE4.970e-11094.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2XVJ0_9STRA2.800e-8057.48Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835ZCC9_9STRA2.360e-7958.85IFT27, ras superfamily GTPase n=1 Tax=Tribonema mi... [more]
A0A7S3JRK5_9STRA6.110e-6855.50Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3M1Q0_9STRA4.580e-6749.30Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S0SQ35_9STRA1.140e-6348.33Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A8J2SZ95_9STRA6.780e-6251.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2RIT4_9STRA1.170e-5950.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A0N7L680_PLAHL1.590e-5946.63Intraflagellar transport protein 27 homolog n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10445contigEcto-sp13_S_contig10445:1809..5796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score429.5
Seed ortholog evalue1e-117
Seed eggNOG ortholog2880.D7FJQ1
Preferred nameIFT27
Model size1077
KEGG koko:K07934
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006886,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007264,GO:0007275,GO:0007399,GO:0007423,GO:0008104,GO:0008150,GO:0009987,GO:0010970,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022008,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031175,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033043,GO:0034613,GO:0035556,GO:0035639,GO:0035720,GO:0035721,GO:0035735,GO:0036094,GO:0036126,GO:0042073,GO:0042490,GO:0042886,GO:0042995,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043583,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045184,GO:0046907,GO:0048468,GO:0048513,GO:0048666,GO:0048699,GO:0048731,GO:0048839,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060113,GO:0060119,GO:0060122,GO:0060271,GO:0060491,GO:0065007,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0090102,GO:0097159,GO:0097223,GO:0097225,GO:0097228,GO:0097367,GO:0097542,GO:0097708,GO:0097729,GO:0099111,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1901265,GO:1901363,GO:1902017,GO:1902115
Exons5
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0079@1,KOG0079@2759
Ec32 ortholog descriptionIFT27, Ras superfamily GTPase
Ec32 orthologEc-06_010640.1
Cds size699
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04031
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10445.425.1prot_Ecto-sp13_S_contig10445.425.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10445 2089..5698 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.2066424-UTR-Ecto-sp13_S_contig10445:1808..20881681462531.2066424-UTR-Ecto-sp13_S_contig10445:1808..2088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10445 1809..2088 -
1681462531.2749321-UTR-Ecto-sp13_S_contig10445:5698..57961681462531.2749321-UTR-Ecto-sp13_S_contig10445:5698..5796Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10445 5699..5796 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462531.217691-CDS-Ecto-sp13_S_contig10445:2088..21371681462531.217691-CDS-Ecto-sp13_S_contig10445:2088..2137Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 2089..2137 -
1681462531.227093-CDS-Ecto-sp13_S_contig10445:2678..27911681462531.227093-CDS-Ecto-sp13_S_contig10445:2678..2791Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 2679..2791 -
1681462531.2369418-CDS-Ecto-sp13_S_contig10445:3587..38091681462531.2369418-CDS-Ecto-sp13_S_contig10445:3587..3809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 3588..3809 -
1681462531.2468941-CDS-Ecto-sp13_S_contig10445:4843..49571681462531.2468941-CDS-Ecto-sp13_S_contig10445:4843..4957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 4844..4957 -
1681462531.264577-CDS-Ecto-sp13_S_contig10445:5497..56981681462531.264577-CDS-Ecto-sp13_S_contig10445:5497..5698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10445 5498..5698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10445.425.1

>prot_Ecto-sp13_S_contig10445.425.1 ID=prot_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp
MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSV
VQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVF
NKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLP
GVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGA
KDIDAPFHHMASRFHETYEKTIEGAEGEGGLP*
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mRNA from alignment at Ecto-sp13_S_contig10445:1809..5796-

Legend: UTRpolypeptideCDS
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>mRNA_Ecto-sp13_S_contig10445.425.1 ID=mRNA_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:1809..5796- (Ectocarpus species13 EcNAP12_S_4_19m)
GATCTTGCGTGGATTGTGTCGGTGCACGCCTTGTGACCCTTGTTGGGCAT CCGCAGTGAGAGTGTTGACTGCGATTCCTCCCTCGGACGGAGAAAGTCAT GTCTCGGGCTGACACAAGTTTGTCGGCGTCCATTGCGGCACCGTCCCAGA GCGGAGTCCGCAGCATGCAAACAAGTCACAGAACGACGTTGATGCTTCGA GCCAAGGTCGTTGTTGTCGGAGACGCGTGCGTGGGGAAATCGTCGGTGGT GCAGATGTTCAAAAGTGGCGGCCACGACTACCCAAAGAACTACATCATGG TGAGGTTCTGCTGTCCGAGATCTCGTCGGAAAACAGTTGTCTATCTACGT ATGGCCTACCAACATTTTTCACCACATTCATCGACTCACCGGAGGAGTGG GGATGCATACGCTTGGCTCGGTGCAACACATGCTGCGTGCGGTGTTGCGG TGTACGTACAACCGTGGTACGATTTCTTTGGAAGGGTTTGTTAGCATGCA GCAGGTCAACATGCGATATGTGCGGCAGGAGGGGAGATGACGGCCAACCT TTGGTTTGGGTTGGATCTGTCGGAGTATTGCCCACTATCGGAGTATGGTA CACGCAAGCAAATAAGGTTGTGTGCAAGGCAAACTGCAAGCGTTGTGTAT TTTTCCAGACAAACAAAGTTGATGCACTTCACATTTTTCGCTCATTGTTA AGCTGTAAAATCGACTCATCTACATAGAACTACAGCTGGTTTCGGATTGT CCCAATATCCACCAGTCCTCCATGCACTCTCGCATCCAATGCGATATTTA TCGTTGACGTCAACCCTGAACACCACACACACCCCGCAGACCATCGGGGT AGACTTTGGAGTGAAGCAAGTGAAAGTTCCCGAGACGGACAGCGTGGTAG AGCTGTTTCTGTTCGATTGCCCTGGACAAGGTGTTTTCAACAAGCTTGAA CAGGTTAGTGAGGGGATCGATAATGCGGTGGAACGTGCATGGCAAGGTGC AACGCTTTCTGACATATAGGTTGCAGTCCTTCTCGCCCGTCTCTACAGCA CGGTACACAGTTAGTTGGGTCGTGCCCGTTGAAGGGCACGGTGGGCATCT CAGTTTCCCTCTTCAAAAATCCAGGAAACGCCTGCACATCTCGGTTTTCC AAAGTCTTACTCCAGTACGAAACTTCAATCGCTGATTAATCGTCCGCGCA CCCACCCTCGTAGGCAATGTTGTTAGTGTCTGAGATTGTAGCCCTTGCGA TACAATGCAGACTACTAGCGGTCCGCGATTTTTCAAACGATCCTCCTATC ATCGAGATCGGTGAGCTACAAGCAGGGTTTTTGCACCTGCTGTGCGGTCC GACTTTAAAACGCTTGAAGCATACAGCAACGGCGAATCAACGCCTATGTG AGTCTGTGGGGCCGCGAACTTCAGGGCAGCTCTTCCCTCACATGCTCTCT TCTCATCGCCACGGTCGATTTGCATGCCTGCGGTATGTATAGGTAGGTCT AGCCAGAAACAAAGGTGCTTGAAGCGTTTCAAAATTGGACCATACAGCAG CCGCGAAAATCCTGCGTGTAGCTCACCGATCTCGATGATAGAAGGATCGT TTGGAAAATCACGGATTGCTTGTCTGCAGTGTATCGCAAGGGCTGCAATC TCAGACACTAACATTGTCTCAATTGTCTACGAGGGGGGGTGCGCGGACGA TTAATTTGCGATTGAAGTTTCGTTCTGGAGTTAGGCTTTGGAAAGCTGAG ATGTGCAGGCGTTTCCTGGATTTTTGAAGAGGAAAACTGCGATCCCCACC GCGCCCTTAAGCCCTCACTGCTGTTATGTAGAGAAAAGAGGGTTTATCGA CCTGAGAATTCCGAACTATCGAATGCACGCAACGAATTATCTGCGGCACA GCAGTTGGTTGCCAATGTTACTTGATGCTGAAGCCCGAATTAATGCTTGT TGGCAACTGTCTTCTTGTTATCGGTGGCCGCACAAAGGGGGCGGCATACT ACGAGAACGCAGCGTTTGTGTGTGTGGTATTCGACGTGAGCAACAGGGAT TCCTTTGAAAGCTGTGGGCGGTGGCTGCAGGGAGTACGAGCGGCCTTGCC ATCCACGTCGGCACCCCTCCCGGGGGTTGTAATCGCTAACAAGTCGGACT TGAGGGAAGGGGGTATCAATGCCAGGGCCGTCGTCGAAACCAAGGCAAGT ACCCTGTTTGTTACTTTTGAGAGTAAATTGGCATCTGCCCAACTCGCGCT CATGTAATGGCAATATTTGCGCAAAGCCTCAGGACATTTTCCGGCGTCCG ATCCGATGTGGTGCATGTTGAAATACAGAGCATTCCATCCATGTAGAAAT TTGTTTCCACCATGTGGTCTCGTACTTTGAAGTAATAATTTTTACCGCAG AATCTGTCACTACTAACTTCTCTTCAACCAAGTTCTTCACTTGGTTTTAG CTATACTTATTGCAGTTTGTTGCAATTCTTGTGCCACTTTTTCCAGGTAG TCAGACACCTTCTTGTTCACCTGCACTCGTTTGTTGCTGCAAATGATACG TACAGATGCGGTATGATAAACGGCGTTTGGTTGAACGTTACATCTAGCGA CGAGTTACAGCGAGGAGCTCGTGCATGAAATGATGTTGATCAGAGGATGA AAATTGTAGGTGTTGCGAGCCCCACTACAAGGCTCAGGCCCAAGTATCCC TCAACATCTGATCTTTGCAAGTTAGCTGTGAAGTGAAAAAAAAGACTGGG AAGTACAAGTCCAAGAAGCGGCATTTAGCAAAAACATCGACTTCGGTCGC TGCCTCAACAGACTCCGGTCTTCACAGATTTTGGTGTGAACATCACACAG AATTCTTTCTGGAACTGCACAGAGGCTAAACCGCCTGCAGATGACCCTTG GGTAAAGGCTTCCTCGACACTACACATTTCTACAGTGCATGCTCGTCTGT CTCTGGATTCCTTCCGAGTCTCCTCTGTTTGGCATTGCCACATGCTCGCT TGCAGGAGGGGCAACTGTTCGCCCTTCAGAATGGCCTAGACTACTTCGAA ACGTCTGCGGCGGGGGCGAAAGATATCGATGCGCCGTTCCACCATATGGC GTCAAGGTTCCACGAAACGTGAGTGATTTCCTTTACGATACATGAATTTG ATTACGTGCTCGCCACCACGCGCGATTCGTAACTCACACCAAGCGCTGGT CGCGGTTTCCGTCCAGTCAATTTTTTTGTAGCCAGGAATTTAGTGTGATC TTGTATCCTTCCATGCGTCGTGTCCATGTCAACTGGGTGACGTTTCGGAG ATGATGAGGGTTAGGGAGCGATAGAGTGTTTGGACAGGTGAACCCTCGTA CACTCGCCCGGTAGATACGCATGATTAGTTATTACAAATTAAACAAACGG AAAAACACCCGAGAGCGGCATCATACCTTTGGATACCACATCGAAGGTGA TCATTGGAAGATTCTTCGTATTTTGGGCATTTGCTTTCTTCTCGAGGTTG TCTATTCCCTTTCGGTTGTGACAGGTGCTCCTTATGCAGCCCGTTGAACC GACTGCATGTGACTGGTGGATGTTCGGCTAGAAGAGCTTCGCGCTACTTT TTTTACGTCTCCGTCTATGCTCTGTCTGCTTTTGTCGTAAATCACTACGG CACCTACAGCTACGAGAAGACCATCGAGGGGGCGGAGGGCGAGGGTGGGC TTCCTTGAAGAACCACCTCGCTTTTGAACTGGACTGAAGAAAGAGCTCCT GTGCTGGGTCAAACTATAGTGCACATCCCTAATTCGTTTGTTTGGCGGTT GAGTTATAACGAAAACCAAGTACTGCTAAGTCCTGAGGACTTCGGTACCA CGATTTGGGGCTTGAAATAATCAAGAACAGCACCTACTGTAGGACGACGC CGAAACTCATGCGAAGGGAGCAAGATTTTCTAGTTTTTATCAAGTGACTG GTGGTGGCGTATGTAGCGATCGATACCCGATACCTTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10445:1809..5796-

>mRNA_Ecto-sp13_S_contig10445.425.1 ID=mRNA_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:1809..5796- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCTCGGGCTGACACAAGTTTGTCGGCGTCCATTGCGGCACCGTCCCA
GAGCGGAGTCCGCAGCATGCAAACAAGTCACAGAACGACGTTGATGCTTC
GAGCCAAGGTCGTTGTTGTCGGAGACGCGTGCGTGGGGAAATCGTCGGTG
GTGCAGATGTTCAAAAGTGGCGGCCACGACTACCCAAAGAACTACATCAT
GACCATCGGGGTAGACTTTGGAGTGAAGCAAGTGAAAGTTCCCGAGACGG
ACAGCGTGGTAGAGCTGTTTCTGTTCGATTGCCCTGGACAAGGTGTTTTC
AACAAGCTTGAACAGGGGGCGGCATACTACGAGAACGCAGCGTTTGTGTG
TGTGGTATTCGACGTGAGCAACAGGGATTCCTTTGAAAGCTGTGGGCGGT
GGCTGCAGGGAGTACGAGCGGCCTTGCCATCCACGTCGGCACCCCTCCCG
GGGGTTGTAATCGCTAACAAGTCGGACTTGAGGGAAGGGGGTATCAATGC
CAGGGCCGTCGTCGAAACCAAGGCAAGTACCCTGTTTGAGGGGCAACTGT
TCGCCCTTCAGAATGGCCTAGACTACTTCGAAACGTCTGCGGCGGGGGCG
AAAGATATCGATGCGCCGTTCCACCATATGGCGTCAAGGTTCCACGAAAC
CTACGAGAAGACCATCGAGGGGGCGGAGGGCGAGGGTGGGCTTCCTTGA
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