mRNA_Ecto-sp13_S_contig10445.425.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: D7FJQ1_ECTSI (IFT27, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJQ1_ECTSI) HSP 1 Score: 428 bits (1101), Expect = 4.190e-149 Identity = 216/232 (93.10%), Postives = 222/232 (95.69%), Query Frame = 3
Query: 99 MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGGLP 794
MSRADT LS S+AAPSQSGVRSMQT+HRTTLMLRAKVVVVGDACVGK+SVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALP+TSAPLPGVVIANKSDLREGGINARAVVETK EG+LFALQNGLDYFETSAAGAK IDAPFHHMA+ FHETYEKTIEGAEGEGGLP
Sbjct: 1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPTTSAPLPGVVIANKSDLREGGINARAVVETK-----EGRLFALQNGLDYFETSAAGAKGIDAPFHHMATSFHETYEKTIEGAEGEGGLP 227
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A6H5KZL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZL0_9PHAE) HSP 1 Score: 329 bits (843), Expect = 4.970e-110 Identity = 166/175 (94.86%), Postives = 170/175 (97.14%), Query Frame = 3
Query: 99 MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKA 623
MSRADT LS S+AAPSQSGVRSMQT+HRTTLMLRAKVVVVGDACVGK+SVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETD VVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPS SAPLPGVVIANKSDLREGGINARAVV T+A
Sbjct: 1 MSRADTILSGSVAAPSQSGVRSMQTTHRTTLMLRAKVVVVGDACVGKTSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDCVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSKSAPLPGVVIANKSDLREGGINARAVVGTEA 175
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S2XVJ0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVJ0_9STRA) HSP 1 Score: 254 bits (648), Expect = 2.800e-80 Identity = 123/214 (57.48%), Postives = 165/214 (77.10%), Query Frame = 3
Query: 147 QSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGG 788
+S +RSM+++H+ LMLR KVV+VGDACVGKS++VQMF GG YPKNY+MT GV F VKQV +P+T+ VEL+LFDC GQ +FN+ EQ +EN ++V VV+DV NRDSF+SC +WLQGVR+ S+ +PGV++ANKSDLREGGIN+RA V + EG+ FA +N L++FETSAA AK++DAPF+ +AS+FH+ YE+T++ AE G
Sbjct: 26 KSALRSMESAHKPLLMLRCKVVLVGDACVGKSALVQMFHGGGQRYPKNYVMTTGVGFCVKQVNIPDTNCAVELYLFDCAGQSIFNQREQNLKSWENTSYVVVVYDVGNRDSFQSCAKWLQGVRSTRQSSM--IPGVLVANKSDLREGGINSRAAVSDE-----EGRNFAQENSLEFFETSAAEAKNVDAPFNFIASQFHQKYEQTVQRAEALSG 232
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A835ZCC9_9STRA (IFT27, ras superfamily GTPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC9_9STRA) HSP 1 Score: 250 bits (639), Expect = 2.360e-79 Identity = 123/209 (58.85%), Postives = 159/209 (76.08%), Query Frame = 3
Query: 165 MQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEGGL 791
M+ H+ LMLR+KVV+VGDA VGK+++ QM S GH+YPKNY+MT VDF VKQ+++PE + VELFLFDC GQGVFNKL+ A +++NA+FVCVVFDV NR+SF+SCGRWLQGVRA P T+AP+PGV+I +K+DLREG +RAVV+ + EG FA +NGL YFE SAA + ++APF HMA +FH YE ++ AEG G+
Sbjct: 1 MEAQHKPLLMLRSKVVIVGDAYVGKTAITQMLISSGHNYPKNYLMTTDVDFSVKQIRLPEVNCCVELFLFDCAGQGVFNKLDLNAVHWDNASFVCVVFDVCNRESFQSCGRWLQGVRATRP-TAAPMPGVLIGSKADLREG---SRAVVDAQ-----EGARFAQENGLAYFEVSAAMSSGVEAPFQHMAQQFHTMYEASMRKAEGLAGV 200
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S3JRK5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRK5_9STRA) HSP 1 Score: 221 bits (564), Expect = 6.110e-68 Identity = 121/218 (55.50%), Postives = 150/218 (68.81%), Query Frame = 3
Query: 123 SASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
S S A QS VRSM++ HR+ LMLR KVVVVGDA VGKS+++ MF SGG +PK Y+MT VDF VKQV +PE+ + VEL+LFDC GQ +FN++E A+YENA+F+C+V+DVSN SFESCG+WLQ V + PS LPGV+IANK DL GG R VV T+ +GQ FA N L YFETSA + D PF H+A F + YE TI A+
Sbjct: 4 SKSSAVEYQSAVRSMESGHRSILMLRCKVVVVGDAAVGKSALISMFHSGGSSFPKQYLMTAWVDFRVKQVSIPESSTAVELYLFDCGGQSIFNQIEANNAHYENASFLCLVYDVSNASSFESCGKWLQMVSKSRPS----LPGVLIANKKDL--GGELGRRVVSTQ-----KGQEFASANNLAYFETSALEG-EFDEPFRHIAIEFAKKYEDTIAHAQ 209
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S3M1Q0_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1Q0_9STRA) HSP 1 Score: 219 bits (558), Expect = 4.580e-67 Identity = 105/213 (49.30%), Postives = 154/213 (72.30%), Query Frame = 3
Query: 147 QSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAEGEG 785
QSG+RSM+TSH+T ++LR K+++VGDACVGK+++ Q F SGG YPKNY+MTIG +F VKQV +PET+ +VELF++DC GQ +FN+L+ + YYENA+ V VV++V+NRDS SC +W+ GV+A + ++ PL G + NK + R+G I++RA V+ + E + A G+ YFETSAA +DAPF ++A F+ YE+T++ G+G
Sbjct: 2 QSGLRSMETSHKTMVILRCKLILVGDACVGKTALTQSFVSGGTTYPKNYLMTIGAEFNVKQVTIPETNVIVELFIYDCAGQSIFNQLDLNSKYYENASAVMVVYNVANRDSLLSCNKWVSGVKA-IQNSGVPLVGAFVGNKCEFRDGSIDSRAEVD-----ILEAKETAESLGMTYFETSAANNIGVDAPFQYIAEEFYRRYEETVQ-TTGQG 207
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S0SQ35_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQ35_9STRA) HSP 1 Score: 211 bits (537), Expect = 1.140e-63 Identity = 101/209 (48.33%), Postives = 151/209 (72.25%), Query Frame = 3
Query: 150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
SG+RSM + H++ +LR K+V++GD+CVGKSS++Q+F+SGG YPKNY+MTIG DF VKQV +P+T+ VVEL++FDC GQ +FN+LE + YYENAA V VV+D+ N+++ +S +WL G+++A+ S + L GV++ NKSD R+G +++RA V + + Q F+ GL YFE SAA + PF H+A+ F++ YE T+ A+
Sbjct: 14 SGIRSMDSKHKSLTVLRCKLVIIGDSCVGKSSLLQVFQSGGTTYPKNYMMTIGADFNVKQVPIPDTNIVVELYIFDCAGQPIFNQLEMNSKYYENAAAVMVVYDIGNQETLQSTTKWLTGLKSAV-SNPSDLIGVLVGNKSDYRDGSVDSRAEVVKE-----DAQRFSKDLGLAYFEASAASNIGVTEPFLHVATEFYKKYEDTLRKAD 216
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A8J2SZ95_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZ95_9STRA) HSP 1 Score: 206 bits (525), Expect = 6.780e-62 Identity = 110/215 (51.16%), Postives = 145/215 (67.44%), Query Frame = 3
Query: 132 IAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
+ P +S +RSM+T+HRT LMLR KVVVVGDA VGKS+++ MF SGG YPK Y+MT VDF VKQV +P+T + VEL+LFDC G VFN++E+ A+ Y+ A F+ VV+DV+ DSF SC +W+QGVR LPGV++ANK DL E R VV+ + G+ FA +NGL YFETSA + + PF H+A F + YE+T+ AE
Sbjct: 21 VPEPMESCLRSMETTHRTILMLRCKVVVVGDATVGKSALISMFHSGGASYPKQYVMTSWVDFRVKQVDIPDTSTAVELYLFDCAGDPVFNQVEENASQYDQAGFLFVVYDVTKEDSFASCAKWIQGVRKGREDR---LPGVLVANKIDLEE-----RRVVDEQ-----RGRDFAKENGLVYFETSALQG-NYEGPFRHVAMEFAKKYEETVARAE 221
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A7S2RIT4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RIT4_9STRA) HSP 1 Score: 201 bits (512), Expect = 1.170e-59 Identity = 105/210 (50.00%), Postives = 141/210 (67.14%), Query Frame = 3
Query: 150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLRE-GGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGAE 776
SG+RSM+TSHR LMLR KV VVGDACVGK+++V++F + YPKNY MT F VKQV + +T + VEL+LFDC GQ VF+ E + +EN AFV V+DVSN++SF+S WL VR+ P + PLPG+++ANK DLRE +RAVV T+ +G+ A GL++ E SAA D D PFH++A FH+ Y++T+ AE
Sbjct: 35 SGLRSMETSHRPLLMLRCKVAVVGDACVGKTALVELFHK--NKYPKNYQMTSWTSFCVKQVNIKDTSAAVELYLFDCGGQSVFSATEANHSLFENTAFVMCVYDVSNKESFDSVRTWLSKVRSRRPPNTPPLPGIIVANKIDLREEDDFMSRAVVTTE-----QGEALAKAEGLEFCEVSAAQQLDHDKPFHYIAEEFHKKYQETVRRAE 237
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Match: A0A0N7L680_PLAHL (Intraflagellar transport protein 27 homolog n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L680_PLAHL) HSP 1 Score: 199 bits (507), Expect = 1.590e-59 Identity = 97/208 (46.63%), Postives = 146/208 (70.19%), Query Frame = 3
Query: 150 SGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVVQMFKSGGHDYPKNYIMTIGVDFGVKQVKVPETDSVVELFLFDCPGQGVFNKLEQGAAYYENAAFVCVVFDVSNRDSFESCGRWLQGVRAALPSTSAPLPGVVIANKSDLREGGINARAVVETKASTLFEGQLFALQNGLDYFETSAAGAKDIDAPFHHMASRFHETYEKTIEGA 773
SG+RSM+T+H++T +LR KV +VG+A VGK++VVQ+ KS GH++PKNY+MT V+ K + +P+T+ VVEL+LFDC GQ +FN+L+ G +Y+ A+ VVFDV+N++SF+SC +W Q VR A P+ + +PGV++ANK+DLR N R + TK E + FA +N + +FE SA ++APF ++A FH+ Y+ T + A
Sbjct: 2 SGLRSMETTHKSTTVLRCKVAIVGEATVGKTAVVQILKSNGHEFPKNYVMTSDVELSTKSISIPDTNVVVELYLFDCAGQSIFNQLDFGTVHYKGASIALVVFDVNNKESFKSCSKWYQDVRDASPNHN--IPGVLLANKTDLR---YNNRDAISTK-----EAEEFAKRNDMKFFECSAQQNAGVEAPFVYIADWFHKKYQATTQRA 199 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10445.425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10445.425.1 >prot_Ecto-sp13_S_contig10445.425.1 ID=prot_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp MSRADTSLSASIAAPSQSGVRSMQTSHRTTLMLRAKVVVVGDACVGKSSVback to top mRNA from alignment at Ecto-sp13_S_contig10445:1809..5796- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10445.425.1 ID=mRNA_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:1809..5796- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10445:1809..5796- >mRNA_Ecto-sp13_S_contig10445.425.1 ID=mRNA_Ecto-sp13_S_contig10445.425.1|Name=mRNA_Ecto-sp13_S_contig10445.425.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10445:1809..5796- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |