mRNA_Ecto-sp13_S_contig10407.390.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10407.390.1
Unique NamemRNA_Ecto-sp13_S_contig10407.390.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A6H5JCG3_9PHAE (Ribosomal_L18_c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCG3_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 8.060e-37
Identity = 69/90 (76.67%), Postives = 77/90 (85.56%), Query Frame = 1 
Query:   10 HRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            H ++ +  +  +  +Y   EDE KYKEHFASYIENELTFED+EDMYKETHKAIREDPSPA KTA+TPDKSFKNAVKLTYAQRKERVAAKK
Sbjct:  218 HNEKRFPGYDRDTKQYDVSEDEAKYKEHFASYIENELTFEDIEDMYKETHKAIREDPSPAPKTAFTPDKSFKNAVKLTYAQRKERVAAKK 307
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S2S5W4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2S5W4_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.180e-29
Identity = 57/93 (61.29%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            AE+HR+RI+G HV EYMEYL EED TKYK+ FASYIE E+  + +E++Y+  H+A+REDPS + K A+TPDKSFK   KL+Y +RK RV AKK
Sbjct:  201 AEMHRERIFGGHVGEYMEYLEEEDNTKYKQQFASYIEEEIDADGLEELYEGVHEAVREDPSASEKVAFTPDKSFKRPSKLSYDERKARVQAKK 293
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S0BVS7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BVS7_9STRA)

HSP 1 Score: 115 bits (287), Expect = 5.000e-29
Identity = 56/93 (60.22%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            AE+H++RI+G HV EYMEYL EED TKY+EHF  YI+ ++  + +E++Y+  H+ IREDPS A K AY+PDK+FK   KLT AQRKERV AKK
Sbjct:  220 AEMHKERIFGGHVGEYMEYLEEEDNTKYQEHFKGYIDEDIEADGLEELYEGVHEKIREDPSAAEKKAYSPDKTFKRKAKLTLAQRKERVQAKK 312
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A448Z3Q5_9STRA (Ribosomal_L18_c domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z3Q5_9STRA)

HSP 1 Score: 114 bits (285), Expect = 6.460e-29
Identity = 55/93 (59.14%), Postives = 73/93 (78.49%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            +++HR+RI+G HV+EYMEYL EED  KYKEHFA YIE ++  + +E++Y+  H+AIREDPSP+ K  ++PDKSFK   KLTY +RK  VAAKK
Sbjct:  201 SDMHRERIFGGHVSEYMEYLEEEDNQKYKEHFAKYIEADVEGDSLEELYESVHEAIREDPSPSEKKDFSPDKSFKRPAKLTYDERKAAVAAKK 293
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S1UYV0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYV0_9STRA)

HSP 1 Score: 109 bits (272), Expect = 6.620e-29
Identity = 53/93 (56.99%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            A++HR+RI+G HV EYMEYL EED  KY+EHFA+YIE+++  + +E++Y+  H+AIREDPSPA K  ++ DKS+K   KLT  +RK RV AKK
Sbjct:   19 ADMHRERIFGGHVGEYMEYLDEEDNQKYQEHFAAYIEDDIEPDGLEELYESVHEAIREDPSPAEKKDFSADKSYKRKAKLTLEERKARVEAKK 111
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S2JWI3_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JWI3_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.800e-28
Identity = 56/93 (60.22%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            AE+H++RI+G HV EYMEYL EED  KY+E F  YIEN++  + +E++Y+E H+ IREDPS A K A+ PDKS+K   KLT  QRKERVAAKK
Sbjct:  166 AEMHKERIFGGHVGEYMEYLEEEDNQKYQEQFKIYIENDVEADGLEELYEEVHEKIREDPSAAEKKAFEPDKSYKRKAKLTLEQRKERVAAKK 258
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S4I3S1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3S1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 1.070e-27
Identity = 51/93 (54.84%), Postives = 71/93 (76.34%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            A++HR+RI+G HV EYMEYL EED  KY+EHFA++I N++  + +E++Y+  H+ IREDPS + K A++PDKSFK   KL+Y +RK RV  KK
Sbjct:   59 ADMHRERIFGGHVGEYMEYLEEEDNQKYQEHFAAFIANDVEADGLEELYESVHEKIREDPSASEKKAFSPDKSFKRKAKLSYDERKARVQEKK 151
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A1Z5J7J4_FISSO (Large subunit ribosomal protein L5e n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7J4_FISSO)

HSP 1 Score: 108 bits (271), Expect = 7.420e-27
Identity = 51/93 (54.84%), Postives = 72/93 (77.42%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            A++HR+RI+G HV+EYMEYL EED  KY+ HF S++EN++  + +E++Y+  H+ IREDPSP+ K  +TPDKS+K   KLT+ +RK RV AKK
Sbjct:  201 ADMHRERIFGGHVSEYMEYLEEEDNAKYQSHFKSFLENDIAGDGLEELYEGVHEKIREDPSPSEKKEFTPDKSYKRKSKLTHDERKARVQAKK 293
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: B5YLN7_THAPS (RL5, ribosomal protein 5, 60S large ribosomal subunit n=2 Tax=Ochrophyta TaxID=2696291 RepID=B5YLN7_THAPS)

HSP 1 Score: 108 bits (270), Expect = 1.060e-26
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            A++HR+RI+G HV EYMEYL EED TKY+  FA Y+ENE+  + +E++Y+  H+ IREDPSP+ K A++PDKSFK   KLT  +RK  V +KK
Sbjct:  201 ADMHRERIFGGHVGEYMEYLEEEDNTKYQAQFAGYLENEVEADGLEELYESVHEKIREDPSPSEKKAFSPDKSFKRKAKLTLEERKAAVQSKK 293
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BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Match: A0A7S2TBJ4_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TBJ4_PROMC)

HSP 1 Score: 105 bits (261), Expect = 1.230e-26
Identity = 52/93 (55.91%), Postives = 70/93 (75.27%), Query Frame = 1 
Query:    1 AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYKETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK 279
            A++HR+RI+G HV EYMEYL EED TK+KE FASY+  E+  +D+E++Y+  H+ IREDPS A K  ++PDKSFK   K++  +RK RV AKK
Sbjct:   69 ADMHRERIFGGHVGEYMEYLEEEDNTKFKEQFASYVAAEVEPDDLEELYEGVHEKIREDPSAADKEDFSPDKSFKRKAKISLQERKARVQAKK 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10407.390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCG3_9PHAE8.060e-3776.67Ribosomal_L18_c domain-containing protein n=2 Tax=... [more]
A0A7S2S5W4_9STRA1.180e-2961.29Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0BVS7_9STRA5.000e-2960.22Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A448Z3Q5_9STRA6.460e-2959.14Ribosomal_L18_c domain-containing protein n=1 Tax=... [more]
A0A7S1UYV0_9STRA6.620e-2956.99Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2JWI3_9STRA1.800e-2860.22Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S4I3S1_9STRA1.070e-2754.84Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A1Z5J7J4_FISSO7.420e-2754.84Large subunit ribosomal protein L5e n=2 Tax=Fistul... [more]
B5YLN7_THAPS1.060e-2655.91RL5, ribosomal protein 5, 60S large ribosomal subu... [more]
A0A7S2TBJ4_PROMC1.230e-2655.91Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10407contigEcto-sp13_S_contig10407:4907..5754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score177.9
Seed ortholog evalue2.1e-42
Seed eggNOG ortholog2880.D8LR22
Preferred nameRPL5
Model size279
KEGG koko:K02932
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0003735,GO:0004857,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009987,GO:0010035,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010646,GO:0010921,GO:0010922,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017101,GO:0019220,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0023051,GO:0030162,GO:0030234,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033036,GO:0033365,GO:0034248,GO:0034250,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035303,GO:0035306,GO:0042176,GO:0042177,GO:0042221,GO:0042254,GO:0042255,GO:0042273,GO:0042886,GO:0043043,GO:0043085,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045727,GO:0045861,GO:0045937,GO:0046483,GO:0046700,GO:0046907,GO:0048027,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051248,GO:0051336,GO:0051338,GO:0051340,GO:0051345,GO:0051348,GO:0051351,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0051716,GO:0055105,GO:0055106,GO:0060255,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071241,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098772,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1902531,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903630,GO:1903632,GO:1904666,GO:1904667,GO:1905015,GO:1905017,GO:1905018,GO:1905020,GO:1905021,GO:1905023,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435
Exons2
EggNOG free text desc.5S rRNA binding
EggNOG OGsCOG0256@1,KOG0875@2759
Ec32 ortholog description60S ribosomal protein L5
Ec32 orthologEc-06_004660.1
Cds size279
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01009,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462529.0444334-CDS-Ecto-sp13_S_contig10407:4906..49541681462529.0444334-CDS-Ecto-sp13_S_contig10407:4906..4954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10407 4907..4954 -
1681462529.0575733-CDS-Ecto-sp13_S_contig10407:5523..57541681462529.0575733-CDS-Ecto-sp13_S_contig10407:5523..5754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10407 5524..5754 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10407.390.1prot_Ecto-sp13_S_contig10407.390.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10407 4907..5754 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10407.390.1

>prot_Ecto-sp13_S_contig10407.390.1 ID=prot_Ecto-sp13_S_contig10407.390.1|Name=mRNA_Ecto-sp13_S_contig10407.390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
AELHRDRIYGAHVAEYMEYLTEEDETKYKEHFASYIENELTFEDVEDMYK
ETHKAIREDPSPAVKTAYTPDKSFKNAVKLTYAQRKERVAAKK
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mRNA from alignment at Ecto-sp13_S_contig10407:4907..5754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10407.390.1 ID=mRNA_Ecto-sp13_S_contig10407.390.1|Name=mRNA_Ecto-sp13_S_contig10407.390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=848bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10407:4907..5754- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAGCTGCACCGCGACCGCATCTACGGCGCTCACGTGGCGGAGTACAT
GGAGTACCTGACGGAGGAAGATGAGACCAAGTACAAGGAGCACTTCGCGT
CGTACATCGAGAACGAGCTCACGTTCGAAGACGTCGAGGACATGTACAAG
GAGACCCACAAGGCCATCCGCGAGGACCCCTCCCCGGCGGTAAAGACGGC
CTACACGCCGGACAAGTCCTTCAAGAACGCGGTAAGTGCTTTGTTTGTTT
CTTCATGGCGTCCTTTCCTTTGTCGCATCCCTTGACGCTTTGAGTGTCCC
TTGTGAGGCCCGTTGCCCTGTGGCGGGAAGTACAGAGTTGTGCCGAAGAA
AATGAGGGAATGTAGTCGATGTACAAGTTGGCCATGGACAGTTCGGGCTG
ATTGCCATCGGCTGGTGGAAACAGCTACCAGTATTGAGGTTGTATTACCA
CAGTTGGTGGTGAAGACGCCCACCACACGTCACTGACAAACGAGTATAGT
TGTACCGCCCCATACACACGTGCGGAGTTGTGATGTGTTATACGACATAC
GCTTGTTGATTCTGAAAAGCACTTGACTGCTTGGCATTTTCCACGAAAAT
CCGCGTCGCTACGCGACGGGACCTATGCTATCACCGTTGGCGTCCCCCTC
TCTCTCACAGACTCGTCCGCCGCTCCCTATACTCGCACTTGCTGTTGTCC
CCCCCCCCATTGTTTTTTGTTTTTGGGATTTGGTTGTGGTTTTTTTCGTG
CTGTTCTTCGCCCCCGATCCATCGATCGACCACCACCACCACCACCGCAG
GTCAAGCTCACCTACGCCCAGCGCAAGGAGAGGGTCGCCGCCAAGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10407:4907..5754-

>mRNA_Ecto-sp13_S_contig10407.390.1 ID=mRNA_Ecto-sp13_S_contig10407.390.1|Name=mRNA_Ecto-sp13_S_contig10407.390.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10407:4907..5754- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGAGCTGCACCGCGACCGCATCTACGGCGCTCACGTGGCGGAGTACAT
GGAGTACCTGACGGAGGAAGATGAGACCAAGTACAAGGAGCACTTCGCGT
CGTACATCGAGAACGAGCTCACGTTCGAAGACGTCGAGGACATGTACAAG
GAGACCCACAAGGCCATCCGCGAGGACCCCTCCCCGGCGGTAAAGACGGC
CTACACGCCGGACAAGTCCTTCAAGAACGCGGTCAAGCTCACCTACGCCC
AGCGCAAGGAGAGGGTCGCCGCCAAGAAG
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