mRNA_Ecto-sp13_S_contig10398.378.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10398.378.1
Unique NamemRNA_Ecto-sp13_S_contig10398.378.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10398.378.1 vs. uniprot
Match: A0A6H5JMA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA3_9PHAE)

HSP 1 Score: 393 bits (1009), Expect = 7.210e-135
Identity = 214/282 (75.89%), Postives = 222/282 (78.72%), Query Frame = 1 
Query:    1 MTACVRGCRHPLWGGNGACSTLSGASTCLCDSGYASRYSMGSSSCVPRSVLVAAYATIAVTSLFTSIFLLWHANKFRQLSRLHQSTRSALMRFRVLLCG-----------------------------SFFAVGTACNFSLATAMGGSLSLPELYVLQTNYAVFIPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSIGLLVGISVIGSFSFSGAKWPFQAVDTIIVLGAVTT----------------------AGLTGVVAHQIVG 693
            MTACVRGCRHPLWGGNGAC+T+SG STCLCDSGYASR SMG SSCVPRSVLV AYATIAVTSL TSIFLLWHA+KFRQLSRLHQSTRSALMRFRVLLCG                             SFFA G ACNFSLATAMGGSLSLPELYVLQTNYAVF+PVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLAD+FKVFQALS+GLLVGISVIGSFSFSGA+WPFQAVDTIIVLGAVTT                       GLT VVAHQI+G
Sbjct:    1 MTACVRGCRHPLWGGNGACTTVSGTSTCLCDSGYASRDSMGRSSCVPRSVLVMAYATIAVTSLITSIFLLWHASKFRQLSRLHQSTRSALMRFRVLLCGREKPLKSTSIRPLPLLVHRSRLCCRRLYRSFFAAGMACNFSLATAMGGSLSLPELYVLQTNYAVFLPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADEFKVFQALSMGLLVGISVIGSFSFSGAQWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIG 282
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BLAST of mRNA_Ecto-sp13_S_contig10398.378.1 vs. uniprot
Match: D8LSN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN7_ECTSI)

HSP 1 Score: 228 bits (581), Expect = 1.550e-72
Identity = 114/125 (91.20%), Postives = 121/125 (96.80%), Query Frame = 1 
Query:  319 ACNFSLATAMGGSLSLPELYVLQTNYAVFIPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSIGLLVGISVIGSFSFSGAKWPFQAVDTIIVLGAVTTAGLTGVVAHQIVG 693
            ACNFSLATAMGGS SLPELYVLQTNYAVF+PVLMFGIPI+VDFWVQSLPMHLLP+HSFLAKAKVLADKF VFQALS+GLLV ISV+GSFSFSGAKWPFQAVDTIIVLGAVTT GLTGV+AHQI+G
Sbjct:    2 ACNFSLATAMGGSRSLPELYVLQTNYAVFLPVLMFGIPIIVDFWVQSLPMHLLPNHSFLAKAKVLADKFNVFQALSMGLLVSISVVGSFSFSGAKWPFQAVDTIIVLGAVTTVGLTGVLAHQIIG 126
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BLAST of mRNA_Ecto-sp13_S_contig10398.378.1 vs. uniprot
Match: D8LSN6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN6_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 8.120e-60
Identity = 103/141 (73.05%), Postives = 114/141 (80.85%), Query Frame = 1 
Query:  271 MRFRVLLCGSFFAVGTACNFSLATAMGGSLSLPELYVLQTNYAVFIPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSIGLLVGISVIGSFSFSGAKWPFQAVDTIIVLGAVTTAGLTGVVAHQIVG 693
            MRFRVLLCG            L  + G + SLPELYVLQT+Y+VF+PVLMFGIPIVVDFW QSLPMHLLPDHSFLAKAKVLA KFK  QALS+GLLVGIS+IGSFSF GA+WPF AVDTI V+GA +T GLT +VAHQIVG
Sbjct:    1 MRFRVLLCGR-----NGLQLLLGDSDGRNRSLPELYVLQTSYSVFLPVLMFGIPIVVDFWAQSLPMHLLPDHSFLAKAKVLAGKFKAVQALSMGLLVGISLIGSFSFGGAEWPFHAVDTIAVVGAASTVGLTDLVAHQIVG 136
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BLAST of mRNA_Ecto-sp13_S_contig10398.378.1 vs. uniprot
Match: A0A6H5JML4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML4_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 1.040e-44
Identity = 85/118 (72.03%), Postives = 92/118 (77.97%), Query Frame = 1 
Query:  406 IPVLMFGIPIVVDFWVQSLPMHLLPDHSFLAKAKVLADKFKVFQALSIGLLVGISVIGSFSFSGAKWPFQAVDTIIVLGAVTT----------------------AGLTGVVAHQIVG 693
            +PVLMFGIPIVVDFWVQSLPMHLLPDHS LAKAKVLAD+F VFQALS+GLLVGI++IGSFSFSGA+WPFQAVDTIIVLGAVTT                       GLT VVAHQI+G
Sbjct:    3 LPVLMFGIPIVVDFWVQSLPMHLLPDHSLLAKAKVLADEFNVFQALSMGLLVGIALIGSFSFSGARWPFQAVDTIIVLGAVTTRVSFAVRARFVCLLGGNFWNPKVGLTSVVAHQIIG 120
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10398.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JMA3_9PHAE7.210e-13575.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LSN7_ECTSI1.550e-7291.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LSN6_ECTSI8.120e-6073.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JML4_9PHAE1.040e-4472.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10398contigEcto-sp13_S_contig10398:2..3027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score68.9
Seed ortholog evalue3.4e-09
Seed eggNOG ortholog2880.D7FP23
Model size693
Hectar predicted targeting categorysignal anchor
Exons4
EggNOG free text desc.Domain of unknown function (DUF305)
EggNOG OGs2C8JY@1,2S34M@2759
Cds size693
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462528.1470146-CDS-Ecto-sp13_S_contig10398:1..401681462528.1470146-CDS-Ecto-sp13_S_contig10398:1..40Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10398 2..40 -
1681462528.157116-CDS-Ecto-sp13_S_contig10398:394..5771681462528.157116-CDS-Ecto-sp13_S_contig10398:394..577Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10398 395..577 -
1681462528.1665587-CDS-Ecto-sp13_S_contig10398:2132..23041681462528.1665587-CDS-Ecto-sp13_S_contig10398:2132..2304Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10398 2133..2304 -
1681462528.1776702-CDS-Ecto-sp13_S_contig10398:2728..30271681462528.1776702-CDS-Ecto-sp13_S_contig10398:2728..3027Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10398 2729..3027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10398.378.1prot_Ecto-sp13_S_contig10398.378.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10398 2..3027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10398.378.1

>prot_Ecto-sp13_S_contig10398.378.1 ID=prot_Ecto-sp13_S_contig10398.378.1|Name=mRNA_Ecto-sp13_S_contig10398.378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=231bp
MTACVRGCRHPLWGGNGACSTLSGASTCLCDSGYASRYSMGSSSCVPRSV
LVAAYATIAVTSLFTSIFLLWHANKFRQLSRLHQSTRSALMRFRVLLCGS
FFAVGTACNFSLATAMGGSLSLPELYVLQTNYAVFIPVLMFGIPIVVDFW
VQSLPMHLLPDHSFLAKAKVLADKFKVFQALSIGLLVGISVIGSFSFSGA
KWPFQAVDTIIVLGAVTTAGLTGVVAHQIVG
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mRNA from alignment at Ecto-sp13_S_contig10398:2..3027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10398.378.1 ID=mRNA_Ecto-sp13_S_contig10398.378.1|Name=mRNA_Ecto-sp13_S_contig10398.378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3026bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10398:2..3027- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTTGCGTCCGCGGGTGCCGACATCCTCTGTGGGGTGGAAACGG
GGCGTGCTCAACCCTCTCCGGGGCTAGCACGTGCTTGTGTGACTCGGGAT
ATGCATCGAGATACTCGATGGGCAGTTCGTCGTGTGTCCCAAGGTCTGTT
CTTGTCGCGGCGTACGCCACAATCGCCGTTACTTCTCTCTTCACCTCGAT
ATTTCTCCTGTGGCATGCGAACAAGTTTCGCCAGCTTTCGAGACTTCATC
AGAGCACTAGATCGGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGG
TACTCGCACATTTGTATTAGATTTAAAGCTTGACAAACCATAAAGTCTAC
GGGAGTTTTAAACACCTGTCGAGCCACGATCTCGGTTCGTTGCCGGTGTA
CGAAGTCGCTGCCCAGCCGCAGATAGAAATCCATCATTAGCTTCCATCAA
TAGTTTTGGCAAGGCTGGGGTGCTTCGGCCCATGGGTTAAGCTACCAGTG
GCAGCAAGCTTACGTAATTAGCTCCATTGTTAGGCTTGAGATCTTACATT
GTAGTCTGATAAAATTAAACTCTCTGAAAAATGTCGAGAATAACATTCTT
GGCTGCCAAGTTCTTGAGCGGGGGCGCAAACTGTAGAGAAAAACCTCTCG
AGAGCACATCCACCCGCCGGTTGCCCCTGCTCATCCATCGCCCCCGACTG
TGCTGTCGCCGTTTACACCGGAGCTTCTTTGCCGTAGGAACGGCGTGCAA
CTTCTCTCTGGCAACGGCAATGGGCGGTAGCCTTTCGCTGCCGGAGTTGT
ACGTTTTACAAACAAACTATGCGGTGTTCATCCCGGTTCTGATGTTCGGG
ATCCCGATTGTCGTGGACTTCTGGGTGCAGAGCCTGCCGATGCATGTGAG
CGACCAAGCCATTAGTCTACACTATACTTCTGGACATGAAACACAATGTA
TGTGCCAGTCGCTGCGTTGATGTATCCTGTTCGCCGCCATCATACTTCGT
TGCACCATTCACTGCCTTGCGTTGTGGGATAACTTGGGATAGCGCTCAGG
CAAGGCGGAAGGTGGGTATCTCGTCACTTAGGTGAGCAAAAGAGTCAAGA
CAACCCCGCGCTTGTGGGTTGCGCGTGTCGAAGCTGATGGATCTATTGAT
CCCCCCTTTCCCAGTGGAGCTGCGTAAGATGTGTCGATGGTGTCGGTACT
AGGCTTGCATACGCGACCTTCATGTTTCAGCTCATCGCCTGCTCATCATG
CACTTCCTGCGTGTACCACGCCCGTGGGATACCTGCGCCTACGGTGGCGA
CTCGTGTACCATCGTGATCGCTCATGATTTGCACGGTGCGCGATGTGTTC
CTGGGATGCACCGCCCACAGTGGTTGCTCATGATAGGCCGTAGGGTGCTC
ATGGGACGATGGTGTCTGTTGGGTTGCCAGGCGGGGGAGCGCCCAAGGCT
GTCATGGAGGCTCATAGGTCGGAGCTTGGTGTCGAAGGATCACCCGATGG
CCCATAAGTCACGAAAGGACGCCTCGTGGGTTCGGATTCGTCGCGATATT
CACCGGAACGACTCCCGATGTGATCGTTAAGATTCTGATAAACCGCTCAC
GTGTCGTCCGCTAGGAGACGTCGGTCCTCACTGGCAGCGCATAGGCCGCC
GTTGACAAGCTCACCACGACCCTAGAGTGGCCCGCTCAGGCACACACATG
CTGCCAACGACGGTTCACGGCAGCAGATCAGCCGTCACTGGTAGTCCATA
TGCAAGTTGTGGGGATCCATGGGATTCATCATTTGCGTGGTAAAGCGCCT
CATCAAAGTTAATGAGACCCGTAAGGCAGCCCATGAGCCGTCCGATGGCC
CATGGGCCGCTGGTGAGCGTATGAGCCGCCGCTCGTGGCCCAAGGTGGGC
TTCGATGACAGCCCACGAGCCGTCTCATGGGTTGGGAACTCAATACACCC
CGCCATGTCCTACGTCCGCCGCAGGCCACCTGCTCCTTGATGGTAGTCCA
TATGACGTCGCACGCACGCCCTATGGAAAGTGCCCATGCTGGCAAGCCTC
GCTGTAGCTCCCTTGGGGAGGGTGTGTACAAGGCTGACTACCTATTCTCA
CGCGGGGGGAGTGGCTATCAAGCGGCTACTTGACCTGTCCAGGCAGGCTT
TCTGTCGAATCACCTTTGACTGCCCGTGACCTCAATTTTTCTCAACAAAA
AAACCCATGCTGCTCCCCTTCCCGAGCCCGGCCCTCGAGAATGGTGCCAG
TCGCATCACACTTGGCGTACATTGTAGGAGTGACGCTCCGTTTTGCAAAG
ATGTCTTGTGGGCGAGACATCTTGCCACGTGGTCTGTTTGTCGCGAAAGG
AACAAGAAGTCGATTACCGGGAACGACAAAATGCCCGCTACAAAAAGCCT
AACCACCGCTGAGCCCCACTCTATCTTCCCCCCCCGCGCGCGGTCTGCAG
CTGCTTCCCGACCACAGCTTTCTGGCGAAGGCAAAGGTCCTGGCAGACAA
GTTCAAAGTCTTCCAAGCGCTCAGCATCGGGCTCCTGGTCGGCATCTCCG
TGATTGGCTCGTTCTCTTTCAGTGGCGCGAAGTGGCCGTTTCAAGCCGTT
GACACTATCATTGTCCTCGGTGCAGTCACAACGGTGAGAACCGTAGCCAA
CCAATCAGAGTCGCCGGAATGGTGTTTCGTTCACCACCCCGTCAACGAGC
TTTTGTCATCGTCACTGTCGTAAGGACTTGAAGATCACGACGGGAGCGAG
CGCGCCTAGGGAAGTAGGGGAGGGGCGTGCGATACGGAAGGATGGCCGGG
GTTCGGTCTCGAGGCGAGAAAGTCTCCGGTGTATCACAGCTCTACTCCGC
AGAGCGGCGGCATTGGACAGAAGCGGACGATACTGCACAGAAAGTACGCG
GGATGACGCATGAACAAGTAGCGCGTGTCGTTCGCCGTACGTGCCCGCTT
CGTTTGTTTGCTCGGTGGGATTTTCTGGAATCCAAAGGCTGGGCTCACAG
GCGTCGTGGCACACCAAATTGTTGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10398:2..3027-

>mRNA_Ecto-sp13_S_contig10398.378.1 ID=mRNA_Ecto-sp13_S_contig10398.378.1|Name=mRNA_Ecto-sp13_S_contig10398.378.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=693bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10398:2..3027- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACAGCTTGCGTCCGCGGGTGCCGACATCCTCTGTGGGGTGGAAACGG
GGCGTGCTCAACCCTCTCCGGGGCTAGCACGTGCTTGTGTGACTCGGGAT
ATGCATCGAGATACTCGATGGGCAGTTCGTCGTGTGTCCCAAGGTCTGTT
CTTGTCGCGGCGTACGCCACAATCGCCGTTACTTCTCTCTTCACCTCGAT
ATTTCTCCTGTGGCATGCGAACAAGTTTCGCCAGCTTTCGAGACTTCATC
AGAGCACTAGATCGGCCCTCATGCGCTTTCGGGTGCTGCTCTGTGGCAGC
TTCTTTGCCGTAGGAACGGCGTGCAACTTCTCTCTGGCAACGGCAATGGG
CGGTAGCCTTTCGCTGCCGGAGTTGTACGTTTTACAAACAAACTATGCGG
TGTTCATCCCGGTTCTGATGTTCGGGATCCCGATTGTCGTGGACTTCTGG
GTGCAGAGCCTGCCGATGCATCTGCTTCCCGACCACAGCTTTCTGGCGAA
GGCAAAGGTCCTGGCAGACAAGTTCAAAGTCTTCCAAGCGCTCAGCATCG
GGCTCCTGGTCGGCATCTCCGTGATTGGCTCGTTCTCTTTCAGTGGCGCG
AAGTGGCCGTTTCAAGCCGTTGACACTATCATTGTCCTCGGTGCAGTCAC
AACGGCTGGGCTCACAGGCGTCGTGGCACACCAAATTGTTGGC
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