mRNA_Ecto-sp13_S_contig1037.362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1037.362.1
Unique NamemRNA_Ecto-sp13_S_contig1037.362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1037.362.1 vs. uniprot
Match: A0A6H5KMS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMS2_9PHAE)

HSP 1 Score: 414 bits (1064), Expect = 1.030e-141
Identity = 260/299 (86.96%), Postives = 268/299 (89.63%), Query Frame = 1 
Query:    1 MVDRRRTPVRLIFGFLFLTRKEGCVGFVANLAAQQHPQQRHRSCSWGQEDHHHAHRGVAATVXXXXXXVTATRTAEHRAIASRTALHATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDDGEPFPRLEDSRKVEEPRGIGTLFESEDEVIRELSSEEYTDLLRDWAPIASFASVEAIDAKVKEDAAGILTVLRGMAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 897
            MV RRR PVRL+FGFL LTRKEGCVGFVANLAAQQHPQQ                       XXXXXX TATRTA HRAIASRTAL+ATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGD GEPFPRLED++KVEEPRGIGTLFESEDE+IRELSSEEYT+LLRDWAPIASFASVEAID KVKE+AA ILTVLRGMAEWQPKRN+DYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE
Sbjct:    1 MVRRRRIPVRLVFGFLLLTRKEGCVGFVANLAAQQHPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTATRTAAHRAIASRTALYATGFGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGDAGEPFPRLEDAKKVEEPRGIGTLFESEDELIRELSSEEYTNLLRDWAPIASFASVEAIDTKVKEEAACILTVLRGMAEWQPKRNADYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 299
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BLAST of mRNA_Ecto-sp13_S_contig1037.362.1 vs. uniprot
Match: D7FI60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI60_ECTSI)

HSP 1 Score: 200 bits (509), Expect = 9.320e-61
Identity = 93/95 (97.89%), Postives = 95/95 (100.00%), Query Frame = 1 
Query:  616 MAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 900
            MAEWQPKRNSDYTK+GSKWSFGAPIGAIKGGQVDALACL+VSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG
Sbjct:    1 MAEWQPKRNSDYTKVGSKWSFGAPIGAIKGGQVDALACLEVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG 95
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BLAST of mRNA_Ecto-sp13_S_contig1037.362.1 vs. uniprot
Match: A0A0G4F895_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F895_VITBC)

HSP 1 Score: 149 bits (376), Expect = 1.410e-39
Identity = 74/159 (46.54%), Postives = 104/159 (65.41%), Query Frame = 1 
Query:  415 EDSRKVEEPRGIGTLFESEDEVIRELSSEEYTDLLRDWAPIASFASVEAIDAKVKEDAAGILTVLRGMAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKAR 891
            E S      + +GTLF+SEDE IREL S+E+ D +R WAP+++F   E  +A  +E+      VL+ MAEW+P R+  Y      W FGAP+GA KGGQ+DA+ACL++SE DGVVV +I  NP+ +G+ GNA +WL KG+  +C +RL + + I P  R
Sbjct:   58 ESSADPSRAQALGTLFKSEDEEIRELGSDEFLDTMRLWAPMSNFVVNEG-NASSREEGNATRLVLQQMAEWKPPRSGSYLGKTPDWRFGAPVGAFKGGQLDAVACLEISESDGVVVRYIVLNPLNIGVEGNAADWLIKGMAFICRERLGMRLDIYPLMR 215
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BLAST of mRNA_Ecto-sp13_S_contig1037.362.1 vs. uniprot
Match: A0A835Z8Z3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Z3_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.900e-29
Identity = 49/94 (52.13%), Postives = 66/94 (70.21%), Query Frame = 1 
Query:  616 MAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDDGVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGE 897
            M +W P R  D+ + GS W+F AP+ A K G +DA+ACL+V+E+DG+ + W+C NP  LG+PGN++ WL KGI  L GKRLD+ V   P ARGE
Sbjct:    1 MQKWAPARKGDFRQEGSGWAFAAPVAAFKAGNLDAVACLEVTEEDGITIAWLCENPSYLGVPGNSIAWLVKGIETLVGKRLDMAVQELPTARGE 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1037.362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KMS2_9PHAE1.030e-14186.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI60_ECTSI9.320e-6197.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4F895_VITBC1.410e-3946.54Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A835Z8Z3_9STRA1.900e-2952.13Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1037contigEcto-sp13_S_contig1037:9858..12173 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1047
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_003670.1
Cds size1047
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462526.6192703-CDS-Ecto-sp13_S_contig1037:9857..101931681462526.6192703-CDS-Ecto-sp13_S_contig1037:9857..10193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1037 9858..10193 -
1681462526.6302462-CDS-Ecto-sp13_S_contig1037:10837..109271681462526.6302462-CDS-Ecto-sp13_S_contig1037:10837..10927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1037 10838..10927 -
1681462526.6420155-CDS-Ecto-sp13_S_contig1037:11552..121731681462526.6420155-CDS-Ecto-sp13_S_contig1037:11552..12173Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1037 11553..12173 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1037.362.1prot_Ecto-sp13_S_contig1037.362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1037 9858..12173 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1037.362.1

>prot_Ecto-sp13_S_contig1037.362.1 ID=prot_Ecto-sp13_S_contig1037.362.1|Name=mRNA_Ecto-sp13_S_contig1037.362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=349bp
MVDRRRTPVRLIFGFLFLTRKEGCVGFVANLAAQQHPQQRHRSCSWGQED
HHHAHRGVAATVTVAAAAVTATRTAEHRAIASRTALHATGFGPPPPPPRR
ASTPHPSTGAYYPSDDDEDSSSSEPPPDGDDGEPFPRLEDSRKVEEPRGI
GTLFESEDEVIRELSSEEYTDLLRDWAPIASFASVEAIDAKVKEDAAGIL
TVLRGMAEWQPKRNSDYTKLGSKWSFGAPIGAIKGGQVDALACLQVSEDD
GVVVEWICGNPVTLGIPGNAVEWLAKGIHALCGKRLDLPVTISPKARGEG
GGGGQGAAGGGGGGGGGGYGARGGGGGGKGKRSSGGGGKKKSGSKKRR*
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mRNA from alignment at Ecto-sp13_S_contig1037:9858..12173-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1037.362.1 ID=mRNA_Ecto-sp13_S_contig1037.362.1|Name=mRNA_Ecto-sp13_S_contig1037.362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2316bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1037:9858..12173- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGATCGACGGCGAACACCCGTCCGGCTAATCTTCGGCTTCTTGTT
TCTGACGCGAAAGGAAGGATGCGTCGGTTTCGTAGCCAACCTGGCGGCTC
AACAGCACCCGCAGCAGCGACACCGTTCCTGCTCGTGGGGCCAAGAGGAT
CATCATCATGCGCACCGTGGAGTAGCTGCGACTGTAACCGTAGCAGCAGC
AGCAGTGACAGCAACAAGAACAGCAGAGCACAGAGCAATTGCTTCAAGAA
CAGCACTACACGCAACGGGATTCGGCCCGCCGCCGCCTCCCCCAAGGAGA
GCCAGCACACCCCACCCCAGCACTGGCGCCTACTACCCCAGCGACGACGA
CGAGGACAGCAGCAGCAGCGAACCACCGCCCGACGGGGATGACGGAGAGC
CGTTTCCCAGGCTGGAAGACTCGAGGAAGGTGGAGGAGCCCCGGGGGATC
GGGACGCTGTTCGAGTCCGAGGACGAGGTGATCCGCGAGCTGTCGAGCGA
GGAGTACACGGACCTCCTGCGGGACTGGGCGCCGATCGCGTCATTCGCGT
CCGTCGAGGCCATCGACGCCAAGGTCAAGGAGGACGCGGCCGGCATCCTC
ACGGTGCTGAGAGGCATGGCGGTGAGTGTCGGTGCCCACCTTTTTCGAGC
AGCAACGGTGGAGAGTGATCGTACGCATAGAAACCCGAGTCGCATGTTGG
GGTGACGATACAAGCACCACACCGTTGCCGAGGAGGTGTTCCCGCACCTA
TCGCCGTGCCGAGAGGCATGGCGGTGAGTGGTGAGGTGAGGACACGATCT
ACGATTGCGTAGATCTGCAGTAGTGTCGGCCACCTCGGCTGCGGCTTGCT
GGGTGGCGGCTGCTGCTGTGCATCAGATGCATCTCTCTCTCCCTCCCTCG
CTCCTCTCTTTCTCTTGGTAGACAGAGCATCTGGGAGCTACTGCAGCAGT
ATAATCCAATATCTAACCCCATGTGGGTGACAACCCTTCGTAACTGGCAC
ACGGCAGCACGAAACGTTGCCGGAAGGAAGATGAACGGCTGCGTGCCAAC
TCTCGTTGACGCGACGTGGCAATTTCGCTGCCACACACTACTACTGTTAA
TACTGCTGTTCAGAGGGTGCACATGGCACAGGCTGCTCCTTGACCTGTTG
GTGCGTCCAGCCGTAGCAAGTATACTGACGGCGAGACAATAATGTACTTC
CAGCCAGTCGTTTTCCTTGTTTTGGTGTTGGCGTCTTTCCTCGCAGGAGT
GGCAACCAAAGCGTAACTCGGACTACACGAAGCTAGGATCGAAATGGTCC
TTCGGGGCACCGATCGGCGCTATCAAGGGTGGCCAGGTGAGGGCGAAGGC
GTTCTTCTACCTGCTGCTGCTGTTGTTCGTGTCACACAGACCAGCTGTCT
CTGCGAGTCGAGCGCTAAACTAGACAGCAGTAGTGATGTCTTGCTGTGCG
GTGCCACCTCACCCGACCGAGGAGCTGGCTAGATCAATATTTGCGCGGGC
GTTGTGTTTTTCACGTGTGCTCGATGGTTTGCCGGTGCACACTCGGTTGT
TGGGTGGACCTCTCGCGAGGTTAAGTTGTAAAGATATCGCAATCCCGGAC
AGCGGTCAAGAGTAAGTTGCAGACGCAACGCACGGGAAGCAACAAAATGT
AAATGATTTGTACCTGTTATTGGATGAGGATGAAGGGCGTTTTCCGTTGC
ATGGAATGCCGGCACGGCACCATTCGTACATGAAACCAGCCAACCATTGA
AGCAACAAACCTACCAAACCTCCACAACACTCTGCCAAATGCTAATCCAA
TGCAACCAAACCGCCTTCGCGAGGTTTCTACTTGTTCTTGAAATAGAGAG
GGGGGTGGTTTCATAACCCTACCCCGTACCCCCGTACATACCCGCTATTA
CAACCAATCTTAGTATCTTCGCGGACACTGCTGATGCAATTTGGTCGTTC
CCCGCTCCGGTTCGTGTGTTGCTCTTCTAGGTGGACGCCTTGGCGTGCCT
CCAGGTGAGCGAGGACGACGGGGTTGTCGTGGAGTGGATCTGCGGCAACC
CCGTCACCCTCGGCATCCCGGGCAACGCCGTTGAGTGGCTCGCCAAGGGC
ATCCACGCCCTCTGCGGGAAGAGGCTAGACCTCCCGGTGACGATATCGCC
GAAGGCGAGGGGAGAAGGGGGCGGAGGGGGGCAAGGAGCGGCTGGCGGCG
GCGGCGGTGGCGGCGGCGGCGGTTATGGTGCGAGAGGAGGCGGTGGTGGT
GGAAAGGGCAAGAGGAGTAGCGGCGGCGGCGGCAAGAAAAAGAGTGGCTC
AAAGAAACGTCGATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1037:9858..12173-

>mRNA_Ecto-sp13_S_contig1037.362.1 ID=mRNA_Ecto-sp13_S_contig1037.362.1|Name=mRNA_Ecto-sp13_S_contig1037.362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1047bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1037:9858..12173- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGATCGACGGCGAACACCCGTCCGGCTAATCTTCGGCTTCTTGTT
TCTGACGCGAAAGGAAGGATGCGTCGGTTTCGTAGCCAACCTGGCGGCTC
AACAGCACCCGCAGCAGCGACACCGTTCCTGCTCGTGGGGCCAAGAGGAT
CATCATCATGCGCACCGTGGAGTAGCTGCGACTGTAACCGTAGCAGCAGC
AGCAGTGACAGCAACAAGAACAGCAGAGCACAGAGCAATTGCTTCAAGAA
CAGCACTACACGCAACGGGATTCGGCCCGCCGCCGCCTCCCCCAAGGAGA
GCCAGCACACCCCACCCCAGCACTGGCGCCTACTACCCCAGCGACGACGA
CGAGGACAGCAGCAGCAGCGAACCACCGCCCGACGGGGATGACGGAGAGC
CGTTTCCCAGGCTGGAAGACTCGAGGAAGGTGGAGGAGCCCCGGGGGATC
GGGACGCTGTTCGAGTCCGAGGACGAGGTGATCCGCGAGCTGTCGAGCGA
GGAGTACACGGACCTCCTGCGGGACTGGGCGCCGATCGCGTCATTCGCGT
CCGTCGAGGCCATCGACGCCAAGGTCAAGGAGGACGCGGCCGGCATCCTC
ACGGTGCTGAGAGGCATGGCGGAGTGGCAACCAAAGCGTAACTCGGACTA
CACGAAGCTAGGATCGAAATGGTCCTTCGGGGCACCGATCGGCGCTATCA
AGGGTGGCCAGGTGGACGCCTTGGCGTGCCTCCAGGTGAGCGAGGACGAC
GGGGTTGTCGTGGAGTGGATCTGCGGCAACCCCGTCACCCTCGGCATCCC
GGGCAACGCCGTTGAGTGGCTCGCCAAGGGCATCCACGCCCTCTGCGGGA
AGAGGCTAGACCTCCCGGTGACGATATCGCCGAAGGCGAGGGGAGAAGGG
GGCGGAGGGGGGCAAGGAGCGGCTGGCGGCGGCGGCGGTGGCGGCGGCGG
CGGTTATGGTGCGAGAGGAGGCGGTGGTGGTGGAAAGGGCAAGAGGAGTA
GCGGCGGCGGCGGCAAGAAAAAGAGTGGCTCAAAGAAACGTCGATAG
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