mRNA_Ecto-sp13_S_contig10352.348.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10352.348.1
Unique NamemRNA_Ecto-sp13_S_contig10352.348.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A6H5JN56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN56_9PHAE)

HSP 1 Score: 554 bits (1427), Expect = 1.440e-180
Identity = 282/315 (89.52%), Postives = 292/315 (92.70%), Query Frame = 1 
Query:    1 AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKASKGIAPWRRKDKGGKKGGGTDHESSTTRINVKVKGKGGSAAKKRGTPAXXXXXXXXXXXXXXXXTVTTQINVRVKVSPKTKRA 945
            AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKA+CPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPG+LKVVIHHGAKRA+LAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKASKG+APWRRKDKGGKKGGGTD ++ TTRINVK+ G+GGSA KKRGT +                T TT+INVRVKVSPK KRA
Sbjct:  283 AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKAKCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGILKVVIHHGAKRASLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKASKGVAPWRRKDKGGKKGGGTDTDNGTTRINVKINGEGGSATKKRGTASGKKAAESSEVEEDE--TATTEINVRVKVSPKAKRA 595
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: D7FUS9_ECTSI (DNA repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS9_ECTSI)

HSP 1 Score: 511 bits (1317), Expect = 3.560e-173
Identity = 255/264 (96.59%), Postives = 260/264 (98.48%), Query Frame = 1 
Query:    1 AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKASKGIAPWRRKDKGGKKGGGTDHESSTTRINVK 792
            AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWT+KA CPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQW SELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKA+KG+APWRRKDKGGKKGGGTD ++ TTRINVK
Sbjct:   69 AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTEKANCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWHSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKAAKGVAPWRRKDKGGKKGGGTDADNGTTRINVK 332
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A836CRA2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRA2_9STRA)

HSP 1 Score: 246 bits (627), Expect = 4.600e-68
Identity = 128/233 (54.94%), Postives = 170/233 (72.96%), Query Frame = 1 
Query:    4 QTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQE-KLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMG---PGGA-SKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            Q +L+++V +S+G+VD++Y+PI PDDL+RK W  KA  P ++++ LLPYQ EGL W+L+QE + +++GGILADEMG  KT+QAI  ++ANR + KDK     W  +E  M     G A +   RGGTLV+CP IAL QW++E+ RFV+ G L VV +HGA RA     L  ADVVLTTYA+V+ ++R+  A  KV CPDCGK LYPDK+F+HRKYFCG+ A+RT AQAKTQRK
Sbjct:   31 QQVLQERVDESRGQVDELYQPINPDDLIRKAWDKKAPQPPELLSPLLPYQLEGLGWLLHQELEEEHRGGILADEMG--KTIQAISLMLANRPHAKDKQQCSAWTAAEAGMEFPTLGNADTAPRRGGTLVICPLIALTQWRAEIERFVEDGGLSVVTYHGADRAKGTRGLADADVVLTTYAVVQADYRRMVAKRKVKCPDCGKALYPDKLFLHRKYFCGEGAERTAAQAKTQRK 261
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A7S1XLE0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XLE0_9STRA)

HSP 1 Score: 226 bits (577), Expect = 9.750e-65
Identity = 119/231 (51.52%), Postives = 154/231 (66.67%), Query Frame = 1 
Query:    1 AQTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMG--PGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            +Q  +  ++ K+Q EV     P+ P++ VR  WT+KA  P DI   LLPYQ EGLAWML+QEK D++GGILADEMGMGKTLQ I T+VA+R   +       WA +E   G  P  A    R GTLV+CP IAL QW++E+ +F   G L VV++HGAKR     +L  ADVVLTTY++V  ++ K  A  K+ CPDCG+  YPDK  +H++YFCGD AQRTEAQ+ TQR+
Sbjct:  238 SQDAIADRLDKTQSEVAVDMRPVDPNECVRAAWTEKAATPVDIRLPLLPYQQEGLAWMLHQEKSDHRGGILADEMGMGKTLQTIATMVAHRPGPEHA---RAWAAAERTHGLTPDAAG---RCGTLVICPVIALLQWKAEIEKFTHEGALNVVVYHGAKRTKDLAELRRADVVLTTYSVVMADYNKVMAPTKITCPDCGRRFYPDKYRLHKQYFCGDDAQRTEAQSLTQRR 462
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A7R9U350_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U350_9STRA)

HSP 1 Score: 221 bits (563), Expect = 7.230e-62
Identity = 112/222 (50.45%), Postives = 150/222 (67.57%), Query Frame = 1 
Query:   22 KVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            ++ ++Q +V      + PD  VRK WT+K   P DI   LLPYQ EGLAWM++QE+ D++GGILADEMGMGKTLQ I TIV NR   + +     W ++E + G     +  R GTLV+CP IAL QW++E+ +F +   L V+I+HG KR +   +L +ADVVLTTY++V+ ++ K  A  K++CPDCGK  YPDK  +HRKYFCG  AQRT AQA TQR+
Sbjct:  271 RLEETQDKVPADMRAVEPDACVRKAWTEKRATPKDIKLPLLPYQQEGLAWMIHQEESDHRGGILADEMGMGKTLQTIATIVENRPGPEHEAA---WTEAERKHGLD-PDQRVRCGTLVICPVIALLQWRAEIEKFTRENCLNVMIYHGQKRTSDVRELQAADVVLTTYSVVQADYSKVLAPTKISCPDCGKRFYPDKFRLHRKYFCGAQAQRTSAQALTQRR 488
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: W7TXY3_9STRA (Snf2 super family n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TXY3_9STRA)

HSP 1 Score: 226 bits (575), Expect = 1.390e-60
Identity = 116/233 (49.79%), Postives = 160/233 (68.67%), Query Frame = 1 
Query:    4 QTLLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRKGKASK 702
            Q L++++V +S+ E D+  +PI   +LVRKEWT +   P+ ++  +LPYQ EGL WM  QE++++ GGILADEMGMGKT+QAI  ++ANR ++   +  E W + E   G        R GTLVVCP IAL QWQ+E+ARF + G L V+++HG+ R      L  ADVVLTTY+IVE E+RK  + +KV C DCGK  YPDK+ +H++YFCG+ A  T AQA+TQRKG++ K
Sbjct:  181 QALVKKRVAESREEEDEDSKPIDASELVRKEWTTQREPPETLVLPILPYQKEGLGWMYRQEQVEHHGGILADEMGMGKTIQAIAVMLANRPSE---LHSEAWTRQEASHGRA-PDPCMRAGTLVVCPLIALLQWQTEIARFTREGSLTVLVYHGSSREDAKALLQQADVVLTTYSIVEAEYRKMMSPEKVKCEDCGKRFYPDKLRLHKRYFCGEGAVLTAAQARTQRKGRSVK 409
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A7S3MHT9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MHT9_9STRA)

HSP 1 Score: 225 bits (573), Expect = 3.330e-60
Identity = 119/241 (49.38%), Postives = 153/241 (63.49%), Query Frame = 1 
Query:   10 LLEQKVVKSQGEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKES---------------RGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            L++++   S  E+D+  EPI PD+LVRK W        +++  LLPYQ EGL WM+NQE+ D  GGILADEMGMGKT+QAI  ++ NR +  D      WA S+        +  S               R GTL+V PT+A++QWQ+E+ARF K G L V ++HG+ R T A DLT  D+VLT+Y I+E E+RKA AG KV C  C K  YPDK+ VHRKYFCG+SAQRT AQA TQ+K
Sbjct:  106 LVKERFALSANEIDEDMEPIDPDELVRKAWEKPVEPSPNLLMPLLPYQKEGLGWMVNQEQNDVHGGILADEMGMGKTIQAIALMLQNRPDMSDFAQLREWAASDARHAAPAIADSSTSSTSSSSECPEPMVRCGTLIVLPTVAIRQWQTEIARFTKEGSLTVKVYHGSDRNTSALDLTKTDIVLTSYKILEIEYRKATAGTKVTCRVCQKKFYPDKLRVHRKYFCGESAQRTAAQALTQKK 346
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A3R7G843_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G843_9STRA)

HSP 1 Score: 191 bits (484), Expect = 9.820e-49
Identity = 103/212 (48.58%), Postives = 133/212 (62.74%), Query Frame = 1 
Query:   40 GEVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAK 675
            G +D+  E +  D   ++ W  + +    + A LLPYQ E LAWM+ QE+ DYKGGILADEMGMGKT+QAI  I+ N V +KD     + AK        G S   RGGTLVVCP +A+ QW+SE+ RFV+ G L V IHHG KR  +   + + D+VLTTY+I+E+E RK     KVAC  CGK   PDK+  H KYFCG +A++T  Q K
Sbjct:  260 GVIDERLE-LNDDHYNKRSWMPEKQPSKHLTAELLPYQREALAWMVGQEESDYKGGILADEMGMGKTIQAISLILEN-VRQKDTPASMKGAKR-------GKSSIIRGGTLVVCPLVAVMQWKSEIERFVEHGHLSVYIHHGPKRLDIVAKIAAYDIVLTTYSIIESEIRKTLGWSKVACKYCGKKYLPDKLISHNKYFCGPNARKTVLQDK 462
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BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A0P1AXV8_PLAHL (Nucleotide excision repair protein RAD16 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AXV8_PLAHL)

HSP 1 Score: 190 bits (483), Expect = 1.840e-48
Identity = 102/209 (48.80%), Postives = 126/209 (60.29%), Query Frame = 1 
Query:   64 PITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESR-GGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            P+T D  ++K    + +    + ATLLPYQ E LAWM+ QE  DYKGGILADEMGMGKTLQ I  ++ N                  E+G G     S  GGTLVVCP +A+ QW+SE+ RFV PG L V IHHG KR    + + S D+VLTTY+I+E+E RK     KVAC  CGK   PDK+  H KYFCG +A++T  Q K Q K
Sbjct:  396 PLTDDHFIKKGRMPEKQPSKYLTATLLPYQREALAWMVEQEASDYKGGILADEMGMGKTLQTISLLLENV----------------REVGSGSKKSSSMVGGTLVVCPLVAVMQWKSEIERFVAPGHLSVYIHHGGKRIDSVKSIASYDIVLTTYSIIESEIRKTLGWSKVACKYCGKKYLPDKLESHNKYFCGPNAKKTALQGKQQNK 588
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Match: A0A484DZW1_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DZW1_BRELC)

HSP 1 Score: 190 bits (483), Expect = 1.860e-48
Identity = 103/215 (47.91%), Postives = 137/215 (63.72%), Query Frame = 1 
Query:   43 EVDDMYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKGGILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKESRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSADVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQRTEAQAKTQRK 687
            E+ D   P+  D   +K    + +    + A LLPYQ E LAWM+ QE  DYKGGILADEMGMGKT+QAI  ++ N+  +K K++  + A S++         ++ GGTLVVCP +A+ QW+SE+ RFV+PG L + IHHG KR  L + + S DVVLTTY+I+E+E RK     KVAC  CGK   PDK+  H KYFCG +A++T  Q K Q K
Sbjct:  374 EIIDERLPLADDHFNKKCHMPEKQPSKRLTAILLPYQREALAWMVKQEASDYKGGILADEMGMGKTVQAISLLLENK--QKSKLIGNKSATSQK--------MQTVGGTLVVCPLVAVMQWKSEIERFVEPGHLSIYIHHGVKRFDLIKKIASHDVVLTTYSIIESEFRKTLGWSKVACKFCGKKYLPDKLVSHNKYFCGPNAKKTALQGKQQSK 578
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10352.348.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN56_9PHAE1.440e-18089.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUS9_ECTSI3.560e-17396.59DNA repair protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A836CRA2_9STRA4.600e-6854.94P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S1XLE0_9STRA9.750e-6551.52Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9U350_9STRA7.230e-6250.45Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TXY3_9STRA1.390e-6049.79Snf2 super family n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S3MHT9_9STRA3.330e-6049.38Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A3R7G843_9STRA9.820e-4948.58Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A0P1AXV8_PLAHL1.840e-4848.80Nucleotide excision repair protein RAD16 n=1 Tax=P... [more]
A0A484DZW1_BRELC1.860e-4847.91Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10352contigEcto-sp13_S_contig10352:2..5273 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score486.5
Seed ortholog evalue1.5e-134
Seed eggNOG ortholog2880.D7FUS9
Model size1535
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.pyrimidine dimer repair by nucleotide-excision repair
EggNOG OGsCOG0141@1,KOG1002@2759
Cds size1455
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10352.348.1prot_Ecto-sp13_S_contig10352.348.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10352 28..5219 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.5266154-UTR-Ecto-sp13_S_contig10352:1..271681462525.5266154-UTR-Ecto-sp13_S_contig10352:1..27Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10352 2..27 -
1681462525.6052158-UTR-Ecto-sp13_S_contig10352:5219..52731681462525.6052158-UTR-Ecto-sp13_S_contig10352:5219..5273Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10352 5220..5273 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462525.5359578-CDS-Ecto-sp13_S_contig10352:27..1931681462525.5359578-CDS-Ecto-sp13_S_contig10352:27..193Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 28..193 -
1681462525.544116-CDS-Ecto-sp13_S_contig10352:580..12081681462525.544116-CDS-Ecto-sp13_S_contig10352:580..1208Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 581..1208 -
1681462525.5523233-CDS-Ecto-sp13_S_contig10352:1718..18371681462525.5523233-CDS-Ecto-sp13_S_contig10352:1718..1837Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 1719..1837 -
1681462525.5603395-CDS-Ecto-sp13_S_contig10352:2969..30761681462525.5603395-CDS-Ecto-sp13_S_contig10352:2969..3076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 2970..3076 -
1681462525.5684788-CDS-Ecto-sp13_S_contig10352:3389..36321681462525.5684788-CDS-Ecto-sp13_S_contig10352:3389..3632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 3390..3632 -
1681462525.576576-CDS-Ecto-sp13_S_contig10352:4076..41211681462525.576576-CDS-Ecto-sp13_S_contig10352:4076..4121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 4077..4121 -
1681462525.5848913-CDS-Ecto-sp13_S_contig10352:4624..46641681462525.5848913-CDS-Ecto-sp13_S_contig10352:4624..4664Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 4625..4664 -
1681462525.5929163-CDS-Ecto-sp13_S_contig10352:5112..52191681462525.5929163-CDS-Ecto-sp13_S_contig10352:5112..5219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10352 5113..5219 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10352.348.1

>prot_Ecto-sp13_S_contig10352.348.1 ID=prot_Ecto-sp13_S_contig10352.348.1|Name=mRNA_Ecto-sp13_S_contig10352.348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=485bp
MYEPITPDDLVRKEWTDKARCPDDIMATLLPYQAEGLAWMLNQEKLDYKG
GILADEMGMGKTLQAICTIVANRVNKKDKVMQERWAKSEEEMGPGGASKE
SRGGTLVVCPTIALKQWQSELARFVKPGVLKVVIHHGAKRATLAEDLTSA
DVVLTTYAIVENEHRKAYAGDKVACPDCGKTLYPDKMFVHRKYFCGDSAQ
RTEAQAKTQRKGKASKGIAPWRRKDKGGKKGGGTDHESSTTRINVKVKGK
GGSAAKKRGTPASGKKAAESSEEEEEDETVTTQINVRVKVSPKTKRAAAA
AAKKKKTGPRGSSRDSSDDDEDDFEEPSANSKKRKSTAGGGRGGGVSAEG
GTTPMMEKEGRRPTSQRGSAAVRARRKGMAPRSRRGSPGVMGMTTAIGKG
LPISLRRRARGRTRRRREGRRRRRRAGGLRESEPPASRRASGASPARSRT
LTAAAAMTTRTPATAAAAVPKPRRKPRSPRSSRT*
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mRNA from alignment at Ecto-sp13_S_contig10352:2..5273-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10352.348.1 ID=mRNA_Ecto-sp13_S_contig10352.348.1|Name=mRNA_Ecto-sp13_S_contig10352.348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10352:2..5273- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAGACCCTTCTCGAGCAGAAGGTTGTCAAGAGCCAGGGCGAGGTGGA
TGACATGTACGAGCCGATCACGCCGGACGACTTGGTGCGCAAGGAGTGGA
CAGATAAGGCCAGGTGTCCGGATGACATCATGGCGACCCTGCTACCCTAC
CAGGCCGAAGGGTAAGCCGAGCCCCTACTTTCAGAACCAGCTCGCACACA
AGTACTTTCTTGCAAGAGTGGGTTGTGGTTTGAAGTAGTTGGCACTGAGT
AGGCGCGCAGACAAGTGTCCGATTGAGTTATGGATGACACCTTCCTGCTG
GTACCAGGCCTAACGATAGAGCCGGGGCTGTTGTTTCGCCCATGTTTTGT
GTGATTTGAGGGTGGGGTGAGAAAGAGTCTTTGACGAGGGCTTCCGGCCT
CAAGCCAGTTGAGCGTCGCCAAAGCCCGTACAGATGTATCGTACTGCCAG
AACGCACTTTTTTCACCCCGGAATCGTGCAAGCCTCTTGCGTTTTCGAGT
CGCCCCTTCGAAACACATGTGATTTGTTGCTTTATCGACACGCTTTTTTT
TCCGTTGTGCTCGCGATGCCGCTGTCACGCGATGATGCTCTCTTTCCCGC
ACCGAGCAGGCTAGCGTGGATGCTCAACCAAGAGAAGCTAGACTACAAGG
TACGAGTCAAGCTTCAAGCTTGTCGACAACACCACGCAATACAACCCTTG
ATTGAACGGGGTCTTGCGCATGTTATTAATAGTACATCACAACAAGACCT
GCTGTCTCTCCCGATCCCGCCGATGAACTGGAAGTTAGGGTCTGGGCTGC
GAAGTGGCTGTGTTCAGCGGGAGAGTAAATTACGCCACTTAGCTTGTAGT
GACTCGATCCACAACACGCTGGACACGCGAAAGGAACGGATTCCAATCCT
CGCACGCGGCTCGCCTGTTGTATGTTGGAGTGTCTTGGTGGGGTGTGGAA
TAGGGTTTCCGTCAGTTCAACAGGCGTTTTCGGGGGCAAGGGAGATGTCT
TGGTGAAGGACGATCTTGTCTGCTGTCATTGTTCCAAGTTCCCGTTGGTT
GCACTCTCTCCTAGTTTGAGCTGAACTTCCTTCCCCCTGTTTTGCGTTGC
TTCCTCTGCGTCCGGGATCCGCTGGACTGGACTACTGTCCCTGTCCGCAC
AGGGGGGTATCTTAGCCGACGAAATGGGCATGGGAAAAACGCTTCAGGTA
TGCATCACATCTGGTGGTTTGATGGAAGTGTGATAGGGGTTTTGTTTGTG
TACCCGTACACCTCTATGAAGCACTGTCAGTGGTATCGGCTTTGGCTACG
ATAGCACTGCTGTTCCACCATTTTAGTGTTGCCCTACAGCTGCTCCAATA
TCTGCGGTGCGCTGCGGTCGCTTGGTGCGTCGTTTGTGATTCGGATTCTT
GCACTCTCTTGCATACCATGTTTTCCCCTTGCATCCATCTCTCTCTTTAT
CGTCTCCTGTGTATAGATGTTTTGTAGAGAAGGTTCTCTCGTCATGTGAT
GAGCGCTGATTTGAAGTGAAGACAAAAAAAAAAATGGCCCCTATTCTGTC
AACCACAGGTGAGTTTCTGTTAGTCGTCGTCATCATCTCTCCATTTCTTA
TCTTGCTTTCTGTTCCGACTGTTGTTGTGCAAAACGCTCAGGCGATCTGC
ACGATTGTGGCCAACCGCGTCAACAAGAAGGACAAGGTGATGCAAGAACG
GTGGGCCAAGTCGGAGGAGGAGATGGGGCCCGGTGGCGCGTCGAAGGAAT
CCCGGGGTGGTACCCTTGTCGTTTGCCCCACTATCGCCCTGAAGCAGTGG
CAGAGCGAGCTCGCTCGCTTCGTGAAGCCGGGCGTCCTCAAGGTGGTGAT
TCATCACGGGGCTAAGAGAGCTACTCTCGCGGAGGTGGGAACTTGTAGAG
GTCGTGCTTGTTGTTGTTGTTGTTGTTGTTGTCGTCGTCCTTCATCGCTG
TGGTCGTTGTTGTTGTTTTTGTTGCTGTCATCCAAGCAGCGAAGAAACCC
TTCGGTCCGGCCCCATCCAGGAGATGAAGGCTGTGCTGAACCTGCAAGGA
ATTTTTTTTTCCAAGCATGTTTTTTTTCACTTGGTGTTTTGTGTGTAAGG
TCTGTATCGAACACTCGTTCCTCTTTGTTTGCCGTCCACCATGTTTAGTT
TTTATGACGCTTTCGGCATGTATGTATGTTTGACTGGCGTGCGACAGGAT
TTGACGTCGGCGGACGTGGTCCTAACGACCTACGCAATCGTGGAGAACGA
GCACCGCAAGGCCTATGCGGGCGACAAGGTCGCCTGTCCGGACTGCGGGA
AAACGTGAGAGATTGGTCTAGACGGAGAGAGGGAGCGAGGTGGAGAGACA
AGAGATAGAGAGACAGAAAGAAAACGGCAGAGCAAGATTTGATAAAAGTT
CGTGGTTGCTATGGGGGGGGGGTGTTGTACCTGGGTGGTATGCACCGCCT
CTCATTGTTGAACCCTTCTTGACGGGCCATCCTTTCGCCTTTGGTTCCAT
TATTTATTTTTCGTCTCAAGGTCGGATTTTGCTGCCAAGTTTGGACCGGG
GGCATGTTTTGACCAAACGGATTTCTCCAGGTCGACCTGGAGCTCCTCCG
TCTGTGATGAACCTATATCTACAGAATTGCTTAGGTTTTCCTGACGCTCC
GATGCTCTTTGCGCTTCGTAGCCTTTAGCGATGGGCGCCTCTTTATTTCG
GGCATTGAAAAAGGTTATTCCACCACAGGCGCCTAGAGGCGAAAATCTCA
ATAAACATTGCACATTTTGGTTTTCGATCGAGTTTTCGCCGAAGACTGGC
CTGAAAGATAGGTCGCCTGGCCTCGGGTCTCTCGCGCCCTCATGCTCGAC
GCGCCCCACGCCAGGAACAATTCAACACTTTGAGGTGTCTCCCTGTTGTA
TATGTTCCTGCAAGTGTCCAACGGGTACGTTCGGTTCTTCTTCTCCTTTC
GAGCGGAGACCGGAATGGTTTCTAATGCAACACAACAACAACAGCACAAC
TTCCGTTGAGCTACTACATGAGTTCGTTCGGCACCCGTCTACATTCGCCT
CTACCTGAACCACTTGGCATATTCTACTGCTACACCATCCTCACGCATAT
GTGCGAATTAAGCGCAGCCCGCCCCCCCCCCTCAGAGGGGTGCGGACGGA
GCCCCCTTGCGTTGAATCTGAATATCAATTTCTCTTTGTGGGTCATTGAG
GTCACAAGCTGGGGTCTTCGAGTCAAAAACACGTCAGCTGTGTGAGCTAT
TCAGGGTAAGGTAACATCACTGATTGCAACTGATTCACACCCACACGTGT
TTTACTTCATCACGCCTTCATGACACTTCTGCTATGCTCTACTATGCTCT
GATGAGCCCACTCCGGAGGTTCGCCTTGTGAGACATGTCTGGTCGTGCAT
GTCGACTCCCCGTGCATGGTTTTCCACGCCTGGCAGGCTGTACCCGGACA
AGATGTTCGTCCACCGTAAGTACTTCTGCGGCGACAGCGCGCAGAGGACA
GAGGCCCAGGCGAAGACGCAAAGAAAGGGGAAGGCGTCAAAGGGGATAGC
ACCTTGTGAGTTCTTGGCGGTGTAGGCTAAGAAACAGTGTTTGTTGTTGC
TCGGTGCAGGCGTTTTTTTTTTTCTCCATGTCTGGTTTTTTCGTGGCAGA
ACCGGGAACAAGCCTCTCCGACCCGCTCACGAGCGCACGTGTCTCCGAAG
AAGGTACTACTGCTGTGGGTTGGCGAAACGTTGGAGTCTTCTTTTTTCTA
CGGCACGATACCTCTCGCTGCAAACATGTACCGCTGCTGTCTCTCCACCT
GTGCTTGCGATTGTTTTCGGGGGCCCGCAATTGGTACGTTAAGGCGCACA
GGAAACCCTGTTTTAAGACGGGACATTTTTTTCCGGTGAAGGAGAACGGA
CGTGTCAACTCGGCTGAAGCTGGAAAGGGGACGTATGTGCCATGTGTGCG
CTGTCGCCGACCCTTCGGTCGCTTTCTGCTGTGTTTCACGGCACGTCGTC
GTCGTCTTCGTCACCTCTGTCCTCATTTTTGTCGGCATCGCTACTTTGGT
CGTTGTCGTACACAGGGAGACGCAAAGACAAGGGGGGGAAGAAGGGCGGC
GGCACTGACCACGAGAGCAGCACCACGCGAATCAACGTCAAAGTCAAGGG
TAAGGGGGGCAGCGCAGCCAAGAAGAGGGGCACCCCCGCCTCCGGCAAGA
AGGCAGCCGAGTCGTCGGAAGAGGAGGAGGAGGACGAAACCGTAACCACC
CAGATTAACGTCCGTGTCAAGGTCTCCCCAAAGACGAAGCGCGCGGCAGC
CGCTGCTGCGAAGAAGAAGAAGACAGGGCCTAGGGGCTCGAGTAGGGACA
GCTCTGACGATGACGAGGACGACTTCGAGGAACCGTCAGCCAACAGCAAG
AAGCGGAAGTCGACGGCGGGAGGCGGTAGGGGGGGGGGGGTAAGCGCGGA
AGGCGGGACAACGCCGATGATGGAGAAGGAGGGAAGACGACCGACATCTC
AGCGGGGAAGCGCGGCGGTAAGGGCAAGGCGAAAGGGAATGGCGCCGCGA
AGCAGAAGAGGAAGCCCGGGGGTGATGGGGATGACGACAGCGATCGGGAA
GGGACTACCGATATCTCTAAGGCGAAGGGCAAGGGGAAGAACACGAAGAA
GGAGGGAAGGAAGACGAAGAAGAAGAAGAGCGGGGGGTCTACGGTGAGGC
TAACATATCCCCGACGCGGTGGGAAAGTGGTTTTGGGGCTGAGGGTTTTG
TTTTGGTTGTTCAAAGTCAGGTTGTTTAGCGGTATAATCTAGCTTATGTT
GCCGACACAATGCTGTGAAACCAAGCTAGCTGACCAGCGGTTGCTGCTGT
GAATTCTGGTCATCGGACGGCATGCTGTGTAGTCGAGGTAAACAATATCA
ATATCGAGGAGACGGTTTCGTGTTGCATATTTTTTTGCCTTCGGAGTGGA
CCGACGAGGTTGCTGTTCATTCTCTTTCGGTTCCCGCACCCCACCATCGC
AAGTACCGTTCCAACACTCCCCCTTTTTCATGCACGATTTTCACCGATTT
GCTCTGCCCTGGCGACTCTTATCTTTGCAGAGAAAGCGAGCCGCCGGCGA
GTCGGAGAGCGAGTGGAGCGAGCCCAGCGAGGAGTCGGACTCTGACTGCA
GCAGCGGCGATGACGACTCGGACGCCGGCAACGGCCGCGGCGGCGGTGCC
CAAGCCAAGAAGGAAGCCGCGTTCGCCAAGGTCCTCAAGGACATGATGGA
CAAGCGGGACAGCGCCGAGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10352:2..5273-

>mRNA_Ecto-sp13_S_contig10352.348.1 ID=mRNA_Ecto-sp13_S_contig10352.348.1|Name=mRNA_Ecto-sp13_S_contig10352.348.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10352:2..5273- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGAGCCGATCACGCCGGACGACTTGGTGCGCAAGGAGTGGACAGA
TAAGGCCAGGTGTCCGGATGACATCATGGCGACCCTGCTACCCTACCAGG
CCGAAGGGCTAGCGTGGATGCTCAACCAAGAGAAGCTAGACTACAAGGGG
GGTATCTTAGCCGACGAAATGGGCATGGGAAAAACGCTTCAGGCGATCTG
CACGATTGTGGCCAACCGCGTCAACAAGAAGGACAAGGTGATGCAAGAAC
GGTGGGCCAAGTCGGAGGAGGAGATGGGGCCCGGTGGCGCGTCGAAGGAA
TCCCGGGGTGGTACCCTTGTCGTTTGCCCCACTATCGCCCTGAAGCAGTG
GCAGAGCGAGCTCGCTCGCTTCGTGAAGCCGGGCGTCCTCAAGGTGGTGA
TTCATCACGGGGCTAAGAGAGCTACTCTCGCGGAGGATTTGACGTCGGCG
GACGTGGTCCTAACGACCTACGCAATCGTGGAGAACGAGCACCGCAAGGC
CTATGCGGGCGACAAGGTCGCCTGTCCGGACTGCGGGAAAACGCTGTACC
CGGACAAGATGTTCGTCCACCGTAAGTACTTCTGCGGCGACAGCGCGCAG
AGGACAGAGGCCCAGGCGAAGACGCAAAGAAAGGGGAAGGCGTCAAAGGG
GATAGCACCTTGGAGACGCAAAGACAAGGGGGGGAAGAAGGGCGGCGGCA
CTGACCACGAGAGCAGCACCACGCGAATCAACGTCAAAGTCAAGGGTAAG
GGGGGCAGCGCAGCCAAGAAGAGGGGCACCCCCGCCTCCGGCAAGAAGGC
AGCCGAGTCGTCGGAAGAGGAGGAGGAGGACGAAACCGTAACCACCCAGA
TTAACGTCCGTGTCAAGGTCTCCCCAAAGACGAAGCGCGCGGCAGCCGCT
GCTGCGAAGAAGAAGAAGACAGGGCCTAGGGGCTCGAGTAGGGACAGCTC
TGACGATGACGAGGACGACTTCGAGGAACCGTCAGCCAACAGCAAGAAGC
GGAAGTCGACGGCGGGAGGCGGTAGGGGGGGGGGGGTAAGCGCGGAAGGC
GGGACAACGCCGATGATGGAGAAGGAGGGAAGACGACCGACATCTCAGCG
GGGAAGCGCGGCGGTAAGGGCAAGGCGAAAGGGAATGGCGCCGCGAAGCA
GAAGAGGAAGCCCGGGGGTGATGGGGATGACGACAGCGATCGGGAAGGGA
CTACCGATATCTCTAAGGCGAAGGGCAAGGGGAAGAACACGAAGAAGGAG
GGAAGGAAGACGAAGAAGAAGAAGAGCGGGGGGTCTACGAGAAAGCGAGC
CGCCGGCGAGTCGGAGAGCGAGTGGAGCGAGCCCAGCGAGGAGTCGGACT
CTGACTGCAGCAGCGGCGATGACGACTCGGACGCCGGCAACGGCCGCGGC
GGCGGTGCCCAAGCCAAGAAGGAAGCCGCGTTCGCCAAGGTCCTCAAGGA
CATGA
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