mRNA_Ecto-sp13_S_contig10345.342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10345.342.1
Unique NamemRNA_Ecto-sp13_S_contig10345.342.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10345.342.1 vs. uniprot
Match: D7G2K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2K9_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 2.720e-67
Identity = 176/226 (77.88%), Postives = 178/226 (78.76%), Query Frame = 1 
Query:    1 EGKNKKNKNKRRLPQWAHEELKETAKRVREEHADPGGKGRQNEPQRAAMEGKREDESMRQFNKRVREGTAQLLKEEFKEHSSTNKRRKKYLDDKKRKNKLKKQGLWEEVQRRERLDEDHAAAGFDGADRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAAA 678
            EGK+KK KNKRRLPQWAHEELKETAKRVREEHADPGGKGRQ EPQRAAMEGKREDESMRQFNKRVREGTAQLLK+EFKEHSSTNK                   LW                         XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  WGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAAA
Sbjct:   56 EGKDKKKKNKRRLPQWAHEELKETAKRVREEHADPGGKGRQPEPQRAAMEGKREDESMRQFNKRVREGTAQLLKDEFKEHSSTNKXXXXXXXXXXXXXXXXXXXLWXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGVLGRADDDEGAAQLLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWARQAAAA 280
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BLAST of mRNA_Ecto-sp13_S_contig10345.342.1 vs. uniprot
Match: A0A835YUV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUV8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 7.580e-13
Identity = 71/225 (31.56%), Postives = 99/225 (44.00%), Query Frame = 1 
Query:   28 KRRLPQWAHEELKETAKRVREEHAD----------PGGKGRQNEPQRAAMEGKREDESMRQFNKRVREGTAQLLKEEFKEHSSTNKRRKKYLDDKKRKNKLKKQGLWEEVQRRERLDEDHAAAGFDGADRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNNWGVLGRADDDEGAAQ---LLQKERIRFGEVAHAPPDLAKIPKPRGFKDQGQAKPWAR 663
            K+RLP+WA EEL+ETAKR RE              PG    +N+  +  +  KR DES+R+FN+RVR+  A+ LK+  K  SST  RRKK+L +K +K KL++QGLWEE +                                                            +  A +++G A+     + E I+FGE  H PP    +PK +G K     KPW R
Sbjct:   54 KQRLPEWAKEELRETAKREREADKQLLAGAAATPLPG----ENDTPKVKITPKRTDESLREFNERVRKVAAEALKDNAKRASSTVARRKKHLAEKSQKKKLQRQGLWEEHK------------------------------------------------------------MQVAREEQGIAEERDFSKPEHIQFGETVHEPPRFQSMPKLKGLKPDLAEKPWLR 214
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10345.342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2K9_ECTSI2.720e-6777.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YUV8_9STRA7.580e-1331.56Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10345contigEcto-sp13_S_contig10345:2122..5522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1590
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002610.1
Cds size822
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10345.342.1prot_Ecto-sp13_S_contig10345.342.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10345 2746..4805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.9382198-UTR-Ecto-sp13_S_contig10345:2121..27451681462524.9382198-UTR-Ecto-sp13_S_contig10345:2121..2745Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10345 2122..2745 -
1681462524.9903898-UTR-Ecto-sp13_S_contig10345:4805..48141681462524.9903898-UTR-Ecto-sp13_S_contig10345:4805..4814Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10345 4806..4814 -
1681462525.002709-UTR-Ecto-sp13_S_contig10345:5387..55221681462525.002709-UTR-Ecto-sp13_S_contig10345:5387..5522Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10345 5388..5522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462524.9545567-CDS-Ecto-sp13_S_contig10345:2745..31421681462524.9545567-CDS-Ecto-sp13_S_contig10345:2745..3142Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10345 2746..3142 -
1681462524.965515-CDS-Ecto-sp13_S_contig10345:3732..40351681462524.965515-CDS-Ecto-sp13_S_contig10345:3732..4035Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10345 3733..4035 -
1681462524.9794798-CDS-Ecto-sp13_S_contig10345:4683..48051681462524.9794798-CDS-Ecto-sp13_S_contig10345:4683..4805Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10345 4684..4805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10345.342.1

>prot_Ecto-sp13_S_contig10345.342.1 ID=prot_Ecto-sp13_S_contig10345.342.1|Name=mRNA_Ecto-sp13_S_contig10345.342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MEGKREDESMRQFNKRVREGTAQLLKEEFKEHSSTNKRRKKYLDDKKRKN
KLKKQGLWEEVQRRERLDEDHAAAGFDGADRGGGGGGGGAGGSGGPAGPG
RHGGGGGGGGGGGGGGGNNWGVLGRADDDEGAAQLLQKERIRFGEVAHAP
PDLAKIPKPRGFKDQGQAKPWARQAAAAAVGGMGDTSSSSGASTGNQGES
QGQQKKAKRNRRNNAAGGRGDEKQRQEPRAMKAEAKKAQNRQMEEMRQRV
QEAYSGLKKKRRAGQTQFVGSDL*
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mRNA from alignment at Ecto-sp13_S_contig10345:2122..5522-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10345.342.1 ID=mRNA_Ecto-sp13_S_contig10345.342.1|Name=mRNA_Ecto-sp13_S_contig10345.342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3401bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10345:2122..5522- (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGCAAGAACAAGAAGAACAAGAATAAGCGCAGGCTGCCCCAGTGGGC
GCACGAGGAGCTCAAGGAGACCGCCAAGAGGGTCCGCGAAGAGCACGCCG
ACCCGGGGGGAAAGGGACGCCAGAACGAGCCTCAGGTCGGTAGTGTGTTG
TCACATGACTCTTCCTTTTCGACGTGCTTGTTTCGTTGGAATGTTCGGCA
GACGAGATACGGAAAAGTTCGGAACCGACCTGCATGAAGAATCCCCAGAG
GAGTTCGTCCATGCTTACGCCCTCGGTGCGTCGAAGGCAAGCACCGCCGG
AGGAAAGCTTGAGAATTCCTCATGTGTGACCCCGACTGGTCATTTGAAGC
GAAATTCGAAAGATGTAGACCGGCGCCCAGAATATGTTAAACGACTTGGG
GGCGAGAAAACAGGAAATAGCTTGCCCTCGACGCTTACTTGTACACGAGA
ACCGGCTCTACCGTGTTTTTCGTAACGCTGATCGACGAGTTGTGCCTTCC
ACACCACGGCATAGTAGGGGTACGAGCACCTGTGCACCGAGGACTGCGGT
GGTCATGCATTCCGCTATCCTGAGCAGTAGCCCACCCCCCCACACTCCCC
TCGCCCTGTAGCCCCCACTCCCACACGTAGAACATGACGGATTTCCCTGC
TCTTACTACCCTCTGCCTCCGTCTCCACCCAACCCTTGCGTCATTTTGAT
CGCTGTAGCGGGCGGCGATGGAGGGGAAGCGCGAGGACGAGAGCATGCGA
CAATTCAACAAGCGGGTTCGCGAGGGCACGGCCCAGCTGCTCAAGGAGGA
GTTCAAGGAGCACAGCTCCACCAACAAGCGCAGGAAAAAGTGAGACACGC
GAATGGCTTAAGGATAGTGTGCGTCGATGGCGGACGTTGCGCATGATGTT
GACTCCTTCACAGTTTCCCCAAAGGGGTTCCATTGTTTCTTCCGCGGGCT
CCGCGGTATCAGACATTCTGGTAGGACATTTCTAACGAGGTAGATTGAAT
GCTATTGTTCGTTGAGGCAGATCACTAGTGCTTTGGAACTGTTCCCGATG
CGGCTTTTTGTTTGTCGCTTGACGGGAAACGGTCTTATCGTAGTGTAGGA
GGCGATGTACCTCCGCAAGGGAGGGTTTGGCTGGTGGTTTATGCCCGGTT
GATAAGAAATGGTAGCTATGATACCCCGTTTGCTAGAAATGCTCTCCAAG
TTCGTGTGTTTCGACAGCTCTCGTCACGAAATGTATCGTAAGGTGGTTTT
GTAGCACTGCTCGGCAGATGATTTTCTGAAACGTTTGCATATGGGTACCC
GTTTTTCTTTTTTTTGGTATACTGCTGAACAAATTGTTCTCTGTCCCTCT
GTATGTCTCGTTATTGCTCTCTTGACCCGTCTTCCCTCTTCACACCTTGC
CTCTCATGCGCACGAAATCGGCACAGCTCGTCCTGATCGTCACCGAAAAA
CCAACAACCACCTGTCCCGGTCTGTCCGTCCATGCAGGTACCTCGATGAC
AAGAAACGCAAGAATAAGCTCAAGAAGCAGGGTCTGTGGGAAGAGGTGCA
GCGGCGCGAGCGCCTCGACGAAGACCACGCGGCAGCAGGTTTCGATGGGG
CGGATCGAGGCGGTGGCGGCGGCGGCGGCGGCGCTGGTGGCAGCGGTGGT
CCAGCTGGTCCTGGCAGGCATGGAGGTGGCGGCGGCGGCGGCGGTGGCGG
TGGCGGTGGCGGCGGAAACAACTGGGGGGTGTTGGGGCGGGCGGACGATG
ACGAAGGCGCGGCGCAGCTTCTTCAGAAGGAGCGCATCAGGTGCGGTTCG
TCCTTGACCGGCATGTCACAACGCCTGTTGTTTTTTACCGACATCACCAA
CCCGCCCCGTCCCCCTAGCATGAAAGTATGGCGGTCACAAATGCGCCTTG
GACAGTGTTCCAGCCTACCTCGAAGTCGTTGGCGGTGTCTTGTTGGGGGT
CTATTCATTACTTGTTGTGCCGCAAAAAGTTGGTCCCACGCGCCGGCGGC
TATGCTTTCGCACGGCGATGATGCCATTCATTCTCCTCGAAAGGTCGCAG
GCCTTTGGTGCCGCCACTGTACTGCCCCCGCCACCTCAACCAGAGCCTGT
TGCGTACGTCCGTTCCTTGGAAGGTGCGTACAGCTAGGACTCAAGCTCTT
GTGTTTTTTTTGACGAAAACATTTGGCTGGCTCGATTGCATCACACAAGC
TCGAAACTCACCTCTACAGACTGATGTAGGCTTTCGTATACACACCCACA
AACGCACGAGCAGGTAGTTTCGATCCTGCTTATTCACTCGCTCATCGCAA
TCTTAATATTTTTTCTCCTTGGCACTGCCGGCACGAACATAGCTACGACG
CCTACACCCCACCCTTTCGGCTTCCTTTAGGTTTGGAGAAGTGGCGCACG
CACCCCCAGACCTCGCCAAGATTCCCAAGCCGCGCGGCTTCAAGGACCAA
GGGCAGGCCAAGCCGTGGGCAAGGCAAGCCGCCGCCGCGGCCGTGGGCGG
GATGGGGGATACTTCTTCTTCCAGTGGTGCCAGTACGGGAAATCAGGGCG
AGAGCCAGGGGCAGCAGAAGAAGGCAAAGAGAAATAGGAGAAACAACGCG
GCCGGGGGTAGGGGGGATGAAAAGCAGAGGCAAGAGCCGAGGGCGATGAA
GGCGGAAGCGAAGAAAGCCCAGAATCGCCAGATGGAGGAGATGAGGCAGA
GGGTCCAGGAGGCGTACAGCGGGCTGAAGAAGAAGAGGCGCGCGGGGCAG
ACGCAGTTCGTCGGCAGCGACCTCTGAGTGCTGCTCGGCTCTTGCAAAGG
AGTTTCGGAGAAACTTGACCTGCGCCGCCTGCGCCACATTGCTGGTAGCG
CTTTATCCACCCGGCAACACTCGCGGGGAAACAGAGGAGGGGGGAGTTGG
GACACGTTGTCGGGTAGTAATCCCAGTGGTCGGTCTCGTCCAGACGCGGG
GTCGTCAGCCGTAACCCCTGCCGGTGTTCAGCATCATCACTGCTATGATG
CGCGCTGGTTGGACAGAAATCACTGTACCGATGTAAAGGGTAGGGGTCGA
GACGTAGGGTGCAGAGGTTGTCCACGGCATGCGGGGTATTGTGTATCGGG
GATTGATCAGGCGTCTCCCCCCTTCTCTTTGCGTGTCCGAAAGTGTCCGG
GACCAGGTTCCCCGGAAACATAAAACACCAGTTGCGCCAGAGGATAAAAG
CGAGGCAACAGCGGCGTTGGCTGATACTCAGTAGACATGATGGTACAACA
GTGGTTAACCTTGTGCAAGTGATGTTGGGAGATACCACGAGCTCGAGAGA
GAAAAAACTGTATGCGTAGATTACACGTGCGGTTTCTGCTGTTTTTTGCG
ATCTGCTGTTCATCCCGACACCCGCGCATTCATTCCCCGTGACGTTGCTA
T
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10345:2122..5522-

>mRNA_Ecto-sp13_S_contig10345.342.1 ID=mRNA_Ecto-sp13_S_contig10345.342.1|Name=mRNA_Ecto-sp13_S_contig10345.342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10345:2122..5522- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGGGAAGCGCGAGGACGAGAGCATGCGACAATTCAACAAGCGGGT
TCGCGAGGGCACGGCCCAGCTGCTCAAGGAGGAGTTCAAGGAGCACAGCT
CCACCAACAAGCGCAGGAAAAAGTACCTCGATGACAAGAAACGCAAGAAT
AAGCTCAAGAAGCAGGGTCTGTGGGAAGAGGTGCAGCGGCGCGAGCGCCT
CGACGAAGACCACGCGGCAGCAGGTTTCGATGGGGCGGATCGAGGCGGTG
GCGGCGGCGGCGGCGGCGCTGGTGGCAGCGGTGGTCCAGCTGGTCCTGGC
AGGCATGGAGGTGGCGGCGGCGGCGGCGGTGGCGGTGGCGGTGGCGGCGG
AAACAACTGGGGGGTGTTGGGGCGGGCGGACGATGACGAAGGCGCGGCGC
AGCTTCTTCAGAAGGAGCGCATCAGGTTTGGAGAAGTGGCGCACGCACCC
CCAGACCTCGCCAAGATTCCCAAGCCGCGCGGCTTCAAGGACCAAGGGCA
GGCCAAGCCGTGGGCAAGGCAAGCCGCCGCCGCGGCCGTGGGCGGGATGG
GGGATACTTCTTCTTCCAGTGGTGCCAGTACGGGAAATCAGGGCGAGAGC
CAGGGGCAGCAGAAGAAGGCAAAGAGAAATAGGAGAAACAACGCGGCCGG
GGGTAGGGGGGATGAAAAGCAGAGGCAAGAGCCGAGGGCGATGAAGGCGG
AAGCGAAGAAAGCCCAGAATCGCCAGATGGAGGAGATGAGGCAGAGGGTC
CAGGAGGCGTACAGCGGGCTGAAGAAGAAGAGGCGCGCGGGGCAGACGCA
GTTCGTCGGCAGCGACCTCTGA
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