mRNA_Ecto-sp13_S_contig10344.341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: D7FLN1_ECTSI (Asparagine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN1_ECTSI) HSP 1 Score: 345 bits (885), Expect = 4.910e-108 Identity = 226/247 (91.50%), Postives = 228/247 (92.31%), Query Frame = 1
Query: 1 STFLVGERTTIADVGLACAARDLLEGSVAGGATSLGARDLAGLPHVLRWYRTVTHHPAFYATAAPXXXXXXXXXXRGLPGVKGQGKQXXXXXXXXXXKXXXXXXXXXXXSAGDEPLPVVGEGGDLMSSASVVQGSRRLEVAPARFRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
STFLVGERTTIADVGLACAARDL+EGSVAGGA SLGARDLAGLPHVLRWYRTVTHHPAF ATA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXXX AGDEPLPVVGE GDLMSSASVVQGSRRLEVAPARFRRKRVRVRELLASGTS+VGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV
Sbjct: 165 STFLVGERTTIADVGLACAARDLIEGSVAGGAASLGARDLAGLPHVLRWYRTVTHHPAFSATAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGDEPLPVVGESGDLMSSASVVQGSRRLEVAPARFRRKRVRVRELLASGTSVVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 411
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A835YW11_9STRA (Asparagine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW11_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.280e-35 Identity = 124/248 (50.00%), Postives = 155/248 (62.50%), Query Frame = 1
Query: 4 TFLVGERTTIADVGLACAARDLLEGSVAGGATSLGARDLAGLPHVLRWYRTVTHHPAFYATAAPXXXXXXXXXXRGLPGVKGQGKQXXXXXXXXXXKXXXXXXXXXXXSAGDEPLPVVGEGGDLMSSASVVQGSRRLE-VAPARFRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSK-GAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
T+LVG R T AD+ LACAA+ +L + A+ L +DLA LPH RWY TVTHH AF AT G XXXXXXXXXX XXXXXXXXXXX + + AS V + L VAPA++RR+RVRV+ELLA G + G+ VV+GWL+TAR+ +K LLFLVV+DGSC ++QVV S+ G GF AAASCGGVGA V+V G ++ S KGQ +E++A +VEV
Sbjct: 160 TYLVGNRLTAADIALACAAQPILGAA----ASVLSGKDLATLPHAARWYMTVTHHAAF-AT----------------------GTSXXXXXXXXXXXXXXXXXXXXXXXXANSTVDAA------FYQASAVHTDKPLSMVAPAKYRRRRVRVKELLARGAAAAGETVVVRGWLKTARSGAKDTLLFLVVNDGSCHSSLQVVASRDGTEGFAAAASCGGVGACVAVEGPIIESPAKGQVIEMQAKKVEV 374
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A7S2WSY6_9STRA (Asparagine--tRNA ligase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WSY6_9STRA) HSP 1 Score: 106 bits (264), Expect = 2.870e-21 Identity = 60/110 (54.55%), Postives = 79/110 (71.82%), Query Frame = 1
Query: 421 APA-RFRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAAS--CGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
APA RF+RKR+R+ EL+ GT+LVG+ VV+GW +T R A KG++LF+ + DGS SG VQVVV G GF+AA CGG AS S+ G VV S+G GQ +E++A +VEV
Sbjct: 24 APAMRFKRKRIRIAELMQLGTTLVGKTVVVQGWAKTIREAGKGSILFIQLSDGSSSGDVQVVVDAGVEGFEAARPNVCGGTDASFSISGKVVESQGAGQSIELQAVKVEV 133
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A485KAR3_9STRA (Asparagine--tRNA ligase n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A485KAR3_9STRA) HSP 1 Score: 104 bits (260), Expect = 9.270e-21 Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 433 FRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
F+R+RVRV+ELL +G SLVGQ +KGW +T R A GA FL ++DGSC VQVVV+K PGF+ + GG GAS +++G VV S KGQ +EIKA V V
Sbjct: 33 FKRRRVRVKELLGAGLSLVGQSVTIKGWAKTLREAGAGAFCFLEINDGSCFTGVQVVVNKDIPGFEDVINSGGTGASFAIVGDVVESPAKGQLIEIKATHVTV 135
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: T0QBP1_SAPDV (Asparagine--tRNA ligase n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0QBP1_SAPDV) HSP 1 Score: 104 bits (260), Expect = 9.270e-21 Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1
Query: 433 FRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEV 735
F+R+RVRV+ELLA+G S VG VKGW +T R A GA FL ++DGSC +Q+VV+K PGF+A + GG GAS V+GTVV S KGQ +E+KA EV
Sbjct: 33 FKRRRVRVKELLAAGLSTVGHTVTVKGWAKTLREAGAGAFAFLELNDGSCFTGLQIVVAKDVPGFEALINSGGTGASFCVVGTVVESPAKGQLIEVKATEV 133
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A662YCZ1_9STRA (Asparagine--tRNA ligase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YCZ1_9STRA) HSP 1 Score: 103 bits (256), Expect = 2.820e-20 Identity = 60/104 (57.69%), Postives = 71/104 (68.27%), Query Frame = 1
Query: 433 FRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKG-APGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
FRR RVRV+ELLA G +L GQ VKGW +T R A GA FL + DGSC VQ+V+SK GF A + GGVGAS SV+GTVV S KGQ+VE+KA +V V
Sbjct: 17 FRRNRVRVKELLAGGLALEGQTVTVKGWAKTLREAGAGAFAFLELSDGSCFAGVQIVISKEETEGFADAMASGGVGASFSVVGTVVKSPAKGQEVEVKATKVTV 120
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: W7TB32_9STRA (Asparagine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TB32_9STRA) HSP 1 Score: 100 bits (250), Expect = 3.070e-19 Identity = 89/278 (32.01%), Postives = 129/278 (46.40%), Query Frame = 1
Query: 1 STFLVGERTTIADVGLACAARDLLEGSVAGGATSLGARDLA--GLPHVLRWYRTVTHHPAFYATAAPXXXXXXXXXXRGLPGVKGQGKQXXXXXXXXXXKXXXXXXXXXXXSAGDEPLPVVGEGGDLMSSASVVQGSRRLEVAPAR-------------------------FRRKRVRVRELLAS-GTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKG-APGFDAA--ASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
STFL G + T+ADVG+ CA DL+ G + G+ +A P VLRW+ T+ H P F + P LP V ++ + PL E G+ S + + G+R + + A+ F R+R +++LL G + VG+ +KGW+RT RA +KGALLF+ ++DGS + ++Q V+ GF A ASCGGVGAS S+ GT+V S +GQ VE+ A VEV
Sbjct: 148 STFLAGHKVTLADVGVFCALYDLV------GVENAGSMSIALENFPGVLRWFLTLLHQPCFQHVS-PGEADKMKRLQAKLPSVGSTRRKLA-----------------------EGPLA---ENGNRRPSKAGIAGARATQASAAKSGPAGGGRSSTKPPLLPKDGPDSSLFDRRRTVIKQLLVERGEAAVGETVTIKGWVRTIRAGNKGALLFIELNDGSTALSMQAVLEADKTQGFAEATPASCGGVGASFSITGTLVRSPAEGQAVELHATVVEV 392
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A024G7W7_9STRA (Asparagine--tRNA ligase n=2 Tax=Albugo TaxID=65356 RepID=A0A024G7W7_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.340e-18 Identity = 55/109 (50.46%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 418 VAPARFRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKG-APGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
V A FRR R+RV++L AS + + + VKGW +T R A G+ FL ++DGSC ++QVV++KG GF AA + GGVGAS SV+G VV S KGQ++EIKA +V+V
Sbjct: 5 VTSALFRRDRIRVKDLFASSLTSLNEVVTVKGWSKTLREAGAGSFAFLQLNDGSCFRSIQVVITKGETEGFAAALASGGVGASFSVVGKVVESPAKGQEIEIKASKVDV 113
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A6A5A6A1_9STRA (AA_TRNA_LIGASE_II domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A6A1_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 1.140e-17 Identity = 51/100 (51.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query: 442 KRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAPGFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEVEV 741
+RVRV+ELL +G SLVGQ +KGW +T R A GA +FL ++DGS VQV+V + PGF+ + GG GAS S++G VV S KGQ +E+KA V V
Sbjct: 1 RRVRVKELLGAGLSLVGQSVTIKGWAKTLREAGAGAFVFLEINDGSSFTGVQVLVKQDIPGFEDVINSGGTGASFSIVGDVVESPAKGQLIEVKATHVTV 100
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Match: A0A1Z8UZH7_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Candidatus Puniceispirillum sp. TMED52 TaxID=1986639 RepID=A0A1Z8UZH7_9PROT) HSP 1 Score: 77.8 bits (190), Expect = 1.530e-13 Identity = 42/103 (40.78%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 430 RFRRKRVRVRELLASGTSLVGQKAVVKGWLRTARAASKGALLFLVVDDGSCSGTVQVVVSKGAP-GFDAAASCGGVGASVSVLGTVVASKGKGQDVEIKADEV 735
++RR R+R++ELL G S + + +VKGW+RT+R+A KGA++F+ + DGS +Q+V + G A+CGGVGAS+S +G VV G +E++ +V
Sbjct: 4 KWRRGRIRIKELLQQGVSAIDSEVIVKGWIRTSRSAEKGAIMFVELTDGSTVKGLQLVATMATTIGSQELANCGGVGASLSAVGKVVKCDGGKTPIEVQVYKV 106 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10344.341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10344.341.1 >prot_Ecto-sp13_S_contig10344.341.1 ID=prot_Ecto-sp13_S_contig10344.341.1|Name=mRNA_Ecto-sp13_S_contig10344.341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=137bp MSSASVVQGSRRLEVAPARFRRKRVRVRELLASGTSLVGQKAVVKGWLRTback to top mRNA from alignment at Ecto-sp13_S_contig10344:61..2308+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10344.341.1 ID=mRNA_Ecto-sp13_S_contig10344.341.1|Name=mRNA_Ecto-sp13_S_contig10344.341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10344:61..2308+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10344:61..2308+ >mRNA_Ecto-sp13_S_contig10344.341.1 ID=mRNA_Ecto-sp13_S_contig10344.341.1|Name=mRNA_Ecto-sp13_S_contig10344.341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=411bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10344:61..2308+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |