Homology
BLAST of mRNA_Ecto-sp13_S_contig1032.317.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI) HSP 1 Score: 315 bits (807), Expect = 7.900e-102 Identity = 170/189 (89.95%), Postives = 175/189 (92.59%), Query Frame = 1 Query: 1 MMHPAPVLMVVLAATRFSGAICFTMVTPRSSPSRHVRHV-SSVTTNRLAASSPPLSSSYSTTHTDGSMFAPMEARAVPSLARWQSRLGASGETLGEEGIANPPEESEVTSSGGATTSEPGAGGSGVDLSKGIAFEAPKPKALEPENAEDESESKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 564
MMHPAPV M VLAATRFSG+ICFTMVTPRSS SRHVRH+ SS TT RLAA+SPP SSSYSTTHTD SMFAPMEARAVPSL RWQSRLGASGETLGEEGIANP EESE TSSGGAT SEPG GGSGVDLSKGIAFEAPKPKALEPE AE+ES+SKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM
Sbjct: 1 MMHPAPVFMAVLAATRFSGSICFTMVTPRSSSSRHVRHMASSATTERLAATSPPSSSSYSTTHTDSSMFAPMEARAVPSLDRWQSRLGASGETLGEEGIANPSEESEATSSGGATNSEPGGGGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1032.317.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D7FVZ2_ECTSI | 7.900e-102 | 89.95 | Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... | [more] |
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 1 |
| Model size | 1765 |
| Hectar predicted targeting category | signal peptide |
| Exons | 2 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-01_002700.1 |
| Cds size | 567 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462522.8917687-UTR-Ecto-sp13_S_contig1032:3106..4304 | 1681462522.8917687-UTR-Ecto-sp13_S_contig1032:3106..4304 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig1032 3107..4304 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462522.904907-CDS-Ecto-sp13_S_contig1032:4304..4409 | 1681462522.904907-CDS-Ecto-sp13_S_contig1032:4304..4409 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1032 4305..4409 - |
| 1681462522.9216697-CDS-Ecto-sp13_S_contig1032:6817..7279 | 1681462522.9216697-CDS-Ecto-sp13_S_contig1032:6817..7279 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig1032 6818..7279 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1032.317.1 >prot_Ecto-sp13_S_contig1032.317.1 ID=prot_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MMHPAPVLMVVLAATRFSGAICFTMVTPRSSPSRHVRHVSSVTTNRLAAS
SPPLSSSYSTTHTDGSMFAPMEARAVPSLARWQSRLGASGETLGEEGIAN
PPEESEVTSSGGATTSEPGAGGSGVDLSKGIAFEAPKPKALEPENAEDES
ESKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM* back to topmRNA from alignment at Ecto-sp13_S_contig1032:3107..7279- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig1032.317.1 ID=mRNA_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1032:3107..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACCCTGCGCCTGTGTTAATGGTGGTCCTCGCGGCCACCCGCTT
CTCGGGAGCCATCTGCTTCACAATGGTGACGCCCCGTTCTTCTCCGTCGC
GTCATGTTCGTCATGTTTCCTCAGTGACGACCAACAGGTTAGCTGCCTCC
TCACCACCTTTATCATCATCGTACTCGACAACGCACACCGACGGCAGCAT
GTTCGCGCCGATGGAAGCACGAGCGGTGCCGTCACTCGCCCGGTGGCAAT
CGCGACTCGGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTGAGGAATCAGAAGTGACCAGCAGCGGCGGCGCAACTACCAGCGA
GCCAGGCGCCGGCGGAAGCGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCAGAGAACGCCGAGGATGAGTCT
GAGTCGAAAAAGGTAGGTCTGTGGTCTTTGGATAGCGGCGTCGGCATCGG
CGGCGGCGGCGGCGGCGGCGGTGGGTCGCTCGCCGCCGCTGCCGCCCTGT
GCGGTAATGATGACAGTCCCGCGTTCCTGACTTGCCCATGGTGCAGCAGG
GATGATGTCCCATATGCGTCGATTGCCTGGCATGGTGGGGGTGCCGGGGG
CTCGACGCCGCGATCGGCAGGCTCGAGGCTGTCGTCAAGTGGCGTCTCGA
GGCAAGCCAATCGTGATTCTTCTGTGGCACGGAGAGAAAGATAAAGATGT
ACCCGCTGCCGTTTGTTTCATGTCCCCAAGCTCCACTCGCCCGCTGTTGT
TGATCCCTGCTGGTCCTGACTGGACAGAAACTTTGATCCTTGCTCCTGAC
TCGACAGCCAGAAGTAGTAAATACCATGATATTCTCTCGAAAGCTAGAAA
TGTGGGATGTTCGACCTCCTAGCGGTTTGTGCGTTCCTACCAAAGCGGCA
AACACGATACATTCGTTCCTACCATCTGGAACAGATTGTACCCAGAGCGA
TTGTTACATCGCCAGGTATATTTACGGTCTGTTGGTGACTCTTTAGGTCT
GATCGGTGGTGAAGGCTAGGACACACCGTGGCCGACCCAACCCAACTCAA
CCCTAACCCAAACCGTAACCGTAACCGTAACCCTCACCCACGGCCAACGC
ACGGCCTAGCGGCCGCGAACTGGGCGAGAACACGGCGCAGCCACGTTCTC
GGAATGCGTAACGGTGAGGGAGCGCTGGAGAGGGTCATCGGAACCAACGC
CTGGCCAATCAGACGGCGTGAAACAGCTTAGATAGGAAGAGTCACTTACA
GCGTGTAACAACTGCTGCTACAACACACATATACGCATGCTTTATTTTGT
TGTACTTGTAGTTGCCGTTGGCCAATTACCGAAGATGAATTGCGGTTCGG
ATCCTCGGCTAAATACTGCGCACCGCCCCCCCAGTTTCTGGAATTCAAGA
ACAACTTGAGATTTCCTCACGGAATATCTTTGGAAACCGGGCCAGCCGTT
ATCCTAGAATCTCGGTTGGTTTGATCCAAGTTTCCGGTGTCGCAGGGCAC
GGGTGCGGGCGAACCCTTCGCAAAGCAAAAATTGAATGTTCGACATTCGA
CGTACAACCGCCGTGAGGGTAGGTCTTCACGAAGAAATCAGATCTCGAAA
TCACACTTCGATATAAGACTAAAAGAGTCGGATCTACCCAAATCGGGACA
GAAAGGGCCTGTGTGTCTTAACGGGAGATCTGCCACATGGAAATGAATCT
CTGCAGTCCACCGCGAACAGCTCGAGAGGTCCGCCGCTTGCCGACTGCCA
GATTGCTGTTGTGACGTACTCTTATGGTGTGGCCACACCACATGAGGAGC
TATCGCTCCCGAGACGCACACACCAAACGCGTCCATGGCCTGTGTGCGGT
ACAAATACGATGTCTATGCATGTGCGACTTTGAATCGAGCCTCGTCCAAC
AGAAAGCCACCGATTCGTCTGAGCATTTGAGGTTCGACAACCCACGGGAG
ATTGCCCCACAGACCAACTCATCCCACGCACGTTTTTTTTCGGCGCCAGT
CACGTGCAACAACGATGCGCAGTCACCCTCCCTTTGGGTTGGCTTTTTGT
GCACTCTCTCCTCCGTGCTCGGCGGTGGAAGGAGTTCGTGTGGATGGGGG
TAGGTGGGCACGCGCCGTGCCGTCGACTGGACCGCTAGTGTTCGAAGTTG
GTTTCGTTTCACCCACATCGGGATCCGATTAAATCATTTTACCTTTATTT
TGATTCCCGATTTGGTGTTGGGCGATCCGATGATAAGTCCCAAAGATTCC
ACGGGTTCAAGAACTTTTATCCAATCAACAAGAGAGTTCTTTGGATCTTG
TGGTCTTATAACCAAATCGTGAAGTGCAATCGGGAACCGATTCCTTCGTT
AAGACCGACTTTAAGCAGCACCCGGACGTGTGCACCCTGTGGAGCTAAGC
TCGTCGGTTCGACATTCAACATCGAACTGCGGTCGCCATCACGCATTCAT
GCAGCGTACCAGTTAGTGGAGACGGGCGCCCTACCGCATCGCCTAACAAG
GACCACACGCGGCAGTTTCTAAACGCATCGCACAATCCTCTTCAAGAAAT
CCCTGCACCGCTGTCGCTTGAAGCGAAACAGCTCTTTCCCCCCTTGGCTT
CGCATGCGTTGAATCGTATTCGTTCTGCAGCCCCTCCGCCTCCTTCCTCA
TCGTTTGCTACGCCTGCTGTCTGCTGTTCGAAACAGCTCTTTCCCCCCTT
CGCTTCGCATGCGTTGAATCGTCGTCGTTCTGCAGCCCCGCCTCCTCCTT
CCTCATCGTTTGCTACGCCTGCTGTCTGCTGTTCGCTTGTTTTCGTACGC
GTCTTTTTGCTTGCCCGCAGGTTCGCGTGATCATCTACACGGTGCTATCC
CTCGTACCGTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTCAT
GCCCTTAGATCCCAGCCAGATGTAGCATGGTGGAAGTGCCCCTCCCCCCC
CCGGCCCGCCTCCCTCGGTACCCACGTACTACAACGGCCTAGCTGTGCTT
GGTGATAGATTGGAGGCAGGTTGTTCGAGTTTGATCGTGGCGGTGATGGA
AGTCTGGTCGTGAACAGCTGTTGGTGTGTTTTGCTGTGTGAAGGGGAAGA
TTTTATTGCTCTAGTAGAGCATGGTCAACGGGTGGTTGATTGCCGACTGC
TTGGCTTTGCAAAGAATATATATACTATAGCTACACACGCCGCGCAGTTG
GTGATGCTGCTGTTATTTTGATGGGATTGAGAAGCACCCTCTACAAGCCG
CCATGTCCACCGCCGGGCCTTACCCGACATCACGTGTGCGCCGTGGATTG
CTGAATAAAGTGAATCCTCTATCTGCAGCCAGAATTATTATTTTTGGACA
CAATTTGTTCAGCATGTGCAGCAATCAAGGTCGTTTTTGCTGCCATCTTA
AAGAGGTGCGGATGGAACGGTAAGGGTGGTTTGGTTGAGGAACACAGCAA
GTAGCGACGGTAGGTGCAGCATGCAAGCGTGACCCGGCATGCAATCTTGT
GTGGCAGCGCTTTTCGCAACAGCCTCGCCGTGGATGCAGTGAAAGGCGGC
TAGGTAGGTCTGCGGGCGAGAAGGCGTTGAAACGAAGCGGGGTCGTGGTT
GTTGCCGATTTTTTCCGCGTGCAGTTGTTGACCAAATGTTTTGCGGGGCC
ACGCGCAACAACCGAGAACATTCGGTGTTATTCCAAGGGCGAGAGAGAGC
CGTCAAGTAGACAGGTGTTGAAAAACTGGCAAGAAGCTTGAGCAAAAACA
TGAAGTAGAAAATTGCTTGTTCTCACGGCACGGCCAGAGAGCGTCAACAC
AGATTCCGGTTGACGACCAGCACCAGCAACTCAACATGTGCAACGTATCT
CCCCAGGTGAAAGCGCTCATGACCTCGTCGGAGCCCGTCGCGGAGCTCCG
GCTGCAGCCGCGGAAATGCCGTGTACGGTATGTGGGTGCTGCTGTTATCG
ATCGTCCCTGTTGCTTTCATAATGCGGACCAATTTGGGTGTATGTAGTGA
ATTACTCCCATCCTCCGAAGCATGTGAGCGCTTGAATTTGGAGTCCTCAT
GAGCTTGCTTGCTGCGCTGGCTTCCGGTTTGGCAGAACGGGGCGCACGAT
TGCCACCCACACAGAAGCCACAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig1032:3107..7279- >mRNA_Ecto-sp13_S_contig1032.317.1 ID=mRNA_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1032:3107..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACCCTGCGCCTGTGTTAATGGTGGTCCTCGCGGCCACCCGCTT
CTCGGGAGCCATCTGCTTCACAATGGTGACGCCCCGTTCTTCTCCGTCGC
GTCATGTTCGTCATGTTTCCTCAGTGACGACCAACAGGTTAGCTGCCTCC
TCACCACCTTTATCATCATCGTACTCGACAACGCACACCGACGGCAGCAT
GTTCGCGCCGATGGAAGCACGAGCGGTGCCGTCACTCGCCCGGTGGCAAT
CGCGACTCGGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTGAGGAATCAGAAGTGACCAGCAGCGGCGGCGCAACTACCAGCGA
GCCAGGCGCCGGCGGAAGCGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCAGAGAACGCCGAGGATGAGTCT
GAGTCGAAAAAGGTTCGCGTGATCATCTACACGGTGCTATCCCTCGTACC
GTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTCATGCCCTTAG
ATCCCAGCCAGATGTAG back to top
|