mRNA_Ecto-sp13_S_contig10292.297.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: D7FHQ9_ECTSI (Translocation protein SEC62 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHQ9_ECTSI) HSP 1 Score: 207 bits (528), Expect = 1.100e-64 Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1 Query: 1 SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV
Sbjct: 104 SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 206
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A835ZAL0_9STRA (Translocation protein SEC62 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL0_9STRA) HSP 1 Score: 139 bits (351), Expect = 3.100e-38 Identity = 66/103 (64.08%), Postives = 78/103 (75.73%), Query Frame = 1 Query: 1 SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
S + F GY+TWI+ GSQ LSHL T II+GFL ITCFPIWP+ LK+W WY SVTLLV M+ FL+ R L++ W AGYEFW+LPRLFDE+L F ESFTPV
Sbjct: 103 SRDQTFISTGYYTWIYQGSQTLSHLMTTAIIVGFLTITCFPIWPQFLKIWAWYASVTLLVFMIVFLSARALIWLAMWTAGYEFWILPRLFDESLGFCESFTPV 205
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A6V1K7K4_HETAK (Translocation protein SEC62 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1K7K4_HETAK) HSP 1 Score: 131 bits (329), Expect = 3.550e-35 Identity = 58/95 (61.05%), Postives = 75/95 (78.95%), Query Frame = 1 Query: 22 PAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTP 306
P ++TWI+ G Q S+ TAL+IIGFLL+TCFPIWP LK+W+WY+SVTLL+ M+ F+TIR ++F WI G+EFW+LPRLFD+ L F ESFTP
Sbjct: 103 PKEFYTWIYDGDQTTSYFMTALLIIGFLLLTCFPIWPTFLKIWLWYISVTLLIFMLGFITIRAVIFLIFWIMGFEFWILPRLFDDNLGFTESFTP 197
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: I2CPB5_NANGC (Translocation protein SEC62 n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=I2CPB5_NANGC) HSP 1 Score: 126 bits (317), Expect = 5.500e-33 Identity = 59/98 (60.20%), Postives = 73/98 (74.49%), Query Frame = 1 Query: 16 FDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
++ GY+ WI+ GSQ LS+ T LII GFL ITCFPIWP LKVW+WY+SVTLL M+ FL +R L F F W+ GYEFW LP LFDE+L+F +SF P+
Sbjct: 135 YEELGYYAWIYEGSQTLSNFMTFLIIAGFLAITCFPIWPHFLKVWLWYVSVTLLSFMLGFLLLRFLAFLFVWVTGYEFWFLPNLFDESLSFVDSFKPL 232
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: K0TGD9_THAOC (Translocation protein SEC62 n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TGD9_THAOC) HSP 1 Score: 124 bits (312), Expect = 1.350e-32 Identity = 57/98 (58.16%), Postives = 73/98 (74.49%), Query Frame = 1 Query: 16 FDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
FD + YFTWI+ G+++ SHL T +IIGFL TCFPIWP LKV++WY+SV++L+ + +T R LLF F W+ GYEFW LP LFDE+L F ESF PV
Sbjct: 107 FDESAYFTWIYEGNKKFSHLMTTGLIIGFLCCTCFPIWPNFLKVFVWYMSVSMLIFIFFLITARALLFLFVWVMGYEFWFLPNLFDESLGFVESFIPV 204
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: B7G2F8_PHATC (Translocation protein SEC62 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G2F8_PHATC) HSP 1 Score: 124 bits (311), Expect = 1.930e-32 Identity = 57/98 (58.16%), Postives = 74/98 (75.51%), Query Frame = 1 Query: 16 FDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
FD AGYFTW++ G + +SHL +A +I+GFL CFPIWP+ L+V++WYLSVTLL+ + +T R L F F WI G+EFW LP LFDETL+F +SF PV
Sbjct: 107 FDEAGYFTWVYEGDKTMSHLMSAGLIVGFLFCVCFPIWPQFLRVFVWYLSVTLLLFIFILVTFRALAFLFIWIIGFEFWFLPNLFDETLSFVDSFKPV 204
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A7S2UHV6_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UHV6_9STRA) HSP 1 Score: 120 bits (301), Expect = 5.020e-32 Identity = 55/98 (56.12%), Postives = 72/98 (73.47%), Query Frame = 1 Query: 16 FDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
FD AGYFTW++ G + SH+ T ++I GFL TCFPIWP LK+++WY+SV+LL+ M +T R +LF F WI GY+FW LP LFDE+L F +SF PV
Sbjct: 115 FDEAGYFTWMYEGDKTFSHMMTTVLIGGFLFCTCFPIWPNFLKIFVWYMSVSLLIFMFFLVTTRGVLFLFVWILGYDFWFLPNLFDESLNFTDSFKPV 212
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A6U4IPD0_9STRA (Translocation protein SEC62 n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U4IPD0_9STRA) HSP 1 Score: 121 bits (304), Expect = 1.980e-31 Identity = 56/102 (54.90%), Postives = 74/102 (72.55%), Query Frame = 1 Query: 1 SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTP 306
S N FD +GYFTWI+ G + S++ T L+++GFL TCFPIWP+ LKV++WY+SVTLL+ + +T+R +F WI G+E WVLP LFDETL F ESF P
Sbjct: 100 SRNRDFDESGYFTWIYEGDKSFSNMMTTLLVVGFLCCTCFPIWPQFLKVFVWYMSVTLLIFIFFLITVRGAVFLCIWILGFECWVLPNLFDETLGFVESFKP 201
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A7R9YBG5_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBG5_9STRA) HSP 1 Score: 120 bits (300), Expect = 7.730e-31 Identity = 52/101 (51.49%), Postives = 73/101 (72.28%), Query Frame = 1 Query: 7 NNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
+ F G++TWI+ GSQ +S+L T +I+GFL TCFPIWP+ +KVWMWYLSVT ++++ + IR F W+ GY+FW+LPR++DETL ESFTP+
Sbjct: 98 STSFTEDGFYTWIYQGSQTMSNLATVALIVGFLFFTCFPIWPQFMKVWMWYLSVTFILLIFGIIIIRLFFFLLLWLVGYDFWILPRMWDETLGVLESFTPL 198
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Match: A0A7S1E7X0_9STRA (Translocation protein SEC62 (Fragment) n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E7X0_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.040e-30 Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1 Query: 16 FDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWMWYLSVTLLVIMVTFLTIRCLLFFFAWIAGYEFWVLPRLFDETLAFAESFTPV 309
FD AGYFTW++ G + SHL T +I GFL TCFPIWP LKV++WYLSV+LL+ + +T+R WI GYEFW LP LFDETL+F +SF P+
Sbjct: 12 FDEAGYFTWMYEGDKTFSHLMTTGLIAGFLFCTCFPIWPNFLKVFVWYLSVSLLIFIFLLVTVRXXXXXXXWILGYEFWFLPNLFDETLSFVDSFKPL 109 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10292.297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10292.297.1 >prot_Ecto-sp13_S_contig10292.297.1 ID=prot_Ecto-sp13_S_contig10292.297.1|Name=mRNA_Ecto-sp13_S_contig10292.297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp SGNNQFDPAGYFTWIFLGSQRLSHLFTALIIIGFLLITCFPIWPRILKVWback to top mRNA from alignment at Ecto-sp13_S_contig10292:4729..5437+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10292.297.1 ID=mRNA_Ecto-sp13_S_contig10292.297.1|Name=mRNA_Ecto-sp13_S_contig10292.297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=709bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10292:4729..5437+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10292:4729..5437+ >mRNA_Ecto-sp13_S_contig10292.297.1 ID=mRNA_Ecto-sp13_S_contig10292.297.1|Name=mRNA_Ecto-sp13_S_contig10292.297.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10292:4729..5437+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |