mRNA_Ecto-sp13_S_contig10253.274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE) HSP 1 Score: 114 bits (284), Expect = 6.430e-30 Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query: 1 AMASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
AM+STDREAL+ALFRSTGGAGWWRR NWDTDA +ATW GV V+ QGRVV L + NNL+G IP +LG L+AL L
Sbjct: 18 AMSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTAL 92
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI) HSP 1 Score: 117 bits (294), Expect = 5.740e-29 Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVL 231
MASTDREAL A+FR TGGAGW RRRNWDTDAA+ TW GV+V++QGRVV L + NNL+GTIP ELGKLTAL+ L+L
Sbjct: 1 MASTDREALSAVFRLTGGAGWRRRRNWDTDAALETWEGVKVNNQGRVVTLDLPGNNLQGTIPVELGKLTALEALIL 76
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE) HSP 1 Score: 109 bits (273), Expect = 1.540e-28 Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
M STDREALV+LFRSTGGAGW RR NWDTDA +ATW+GV V+ QGRVV L + NNL+G+IP ELGKL AL+ L
Sbjct: 1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI) HSP 1 Score: 115 bits (288), Expect = 3.780e-28 Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
MASTDREALVALFRSTGGAGW +R NWDTDAAIATWHGVEV+ QGRVV L + N+L G IP ELG L+ LQEL
Sbjct: 1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI) HSP 1 Score: 106 bits (265), Expect = 6.990e-27 Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKL 207
M+STDREAL+ALFRSTGGAGW RR NWDTDA + TWHGV+V+ QGRVV L + NNL+G IP++LG L
Sbjct: 1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE) HSP 1 Score: 107 bits (266), Expect = 1.710e-26 Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVLYD 237
MA DREALVAL+ +TGGA W +RNW+T AA++ W+GVEVD QGRVV L + NNL+GTIP ELG+LTALQ L LY+
Sbjct: 96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFLHLYE 173
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI) HSP 1 Score: 109 bits (273), Expect = 4.030e-26 Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
MASTDREAL+ALFRSTGGAGW RR WDTDA +ATW G EV+ QGRVV LH+++NNL+G IP E G L LQ L
Sbjct: 1 MASTDREALIALFRSTGGAGWKRRDKWDTDAVLATWDGAEVNDQGRVVGLHLSSNNLQGNIPPEPGDLRQLQRL 74
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.390e-25 Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVL 231
MAS DR+ALVALF STGGAGW RR NW+TDA ATW GV+V+ QGRVV + + +NNL+G IPKELG L L L L
Sbjct: 1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE) HSP 1 Score: 100 bits (250), Expect = 3.440e-25 Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQE 222
MA TDR+ALVAL+R+TGG W +NWDTDA + TWHGV+V+ QGRVVKL + +NNLEG IP LG+L LQ+
Sbjct: 1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI) HSP 1 Score: 106 bits (265), Expect = 4.800e-25 Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query: 4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVLYDNHL 246
MA TDR+ALV L+R+TGG W R+NWDTDA + TWHGV+V+ QGRVVKL + +NNLEG IP LGKL LQ+L L N L
Sbjct: 1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKL 81 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10253.274.1 >prot_Ecto-sp13_S_contig10253.274.1 ID=prot_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLback to top mRNA from alignment at Ecto-sp13_S_contig10253:470..1342+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10253.274.1 ID=mRNA_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10253:470..1342+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10253:470..1342+ >mRNA_Ecto-sp13_S_contig10253.274.1 ID=mRNA_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10253:470..1342+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |