mRNA_Ecto-sp13_S_contig10253.274.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10253.274.1
Unique NamemRNA_Ecto-sp13_S_contig10253.274.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5L6T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T0_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 6.430e-30
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = 1
Query:    1 AMASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
            AM+STDREAL+ALFRSTGGAGWWRR NWDTDA +ATW GV V+ QGRVV L +  NNL+G IP +LG L+AL  L
Sbjct:   18 AMSSTDREALIALFRSTGGAGWWRRDNWDTDAVLATWDGVNVNDQGRVVGLSLIRNNLQGPIPSKLGNLSALTAL 92          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LHD4_ECTSI (Putative leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD4_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 5.740e-29
Identity = 56/76 (73.68%), Postives = 65/76 (85.53%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVL 231
            MASTDREAL A+FR TGGAGW RRRNWDTDAA+ TW GV+V++QGRVV L +  NNL+GTIP ELGKLTAL+ L+L
Sbjct:    1 MASTDREALSAVFRLTGGAGWRRRRNWDTDAALETWEGVKVNNQGRVVTLDLPGNNLQGTIPVELGKLTALEALIL 76          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KQP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP2_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.540e-28
Identity = 53/74 (71.62%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
            M STDREALV+LFRSTGGAGW RR NWDTDA +ATW+GV V+ QGRVV L +  NNL+G+IP ELGKL AL+ L
Sbjct:    1 MVSTDREALVSLFRSTGGAGWIRRDNWDTDADLATWNGVNVNVQGRVVNLDLQYNNLQGSIPPELGKLAALRAL 74          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 3.780e-28
Identity = 57/74 (77.03%), Postives = 62/74 (83.78%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
            MASTDREALVALFRSTGGAGW +R NWDTDAAIATWHGVEV+ QGRVV L +  N+L G IP ELG L+ LQEL
Sbjct:    1 MASTDREALVALFRSTGGAGWRQRGNWDTDAAIATWHGVEVNAQGRVVNLSLGGNSLRGHIPPELGALSELQEL 74          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D7FXI0_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXI0_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 6.990e-27
Identity = 48/68 (70.59%), Postives = 57/68 (83.82%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKL 207
            M+STDREAL+ALFRSTGGAGW RR NWDTDA + TWHGV+V+ QGRVV L +  NNL+G IP++LG L
Sbjct:    1 MSSTDREALIALFRSTGGAGWMRRDNWDTDAVLGTWHGVKVNDQGRVVMLSLDQNNLQGHIPRQLGDL 68          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KVC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVC7_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 1.710e-26
Identity = 51/78 (65.38%), Postives = 62/78 (79.49%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVLYD 237
            MA  DREALVAL+ +TGGA W  +RNW+T AA++ W+GVEVD QGRVV L +  NNL+GTIP ELG+LTALQ L LY+
Sbjct:   96 MAQPDREALVALYNATGGAKWENKRNWNTRAALSQWYGVEVDSQGRVVTLSLAGNNLQGTIPPELGQLTALQFLHLYE 173          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 109 bits (273), Expect = 4.030e-26
Identity = 52/74 (70.27%), Postives = 59/74 (79.73%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQEL 225
            MASTDREAL+ALFRSTGGAGW RR  WDTDA +ATW G EV+ QGRVV LH+++NNL+G IP E G L  LQ L
Sbjct:    1 MASTDREALIALFRSTGGAGWKRRDKWDTDAVLATWDGAEVNDQGRVVGLHLSSNNLQGNIPPEPGDLRQLQRL 74          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5KQQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.390e-25
Identity = 50/76 (65.79%), Postives = 58/76 (76.32%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVL 231
            MAS DR+ALVALF STGGAGW RR NW+TDA  ATW GV+V+ QGRVV + + +NNL+G IPKELG L  L  L L
Sbjct:    1 MASKDRDALVALFCSTGGAGWTRRDNWNTDADRATWFGVKVNDQGRVVDVDLGSNNLQGPIPKELGALAKLASLCL 76          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 100 bits (250), Expect = 3.440e-25
Identity = 46/73 (63.01%), Postives = 57/73 (78.08%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQE 222
            MA TDR+ALVAL+R+TGG  W   +NWDTDA + TWHGV+V+ QGRVVKL + +NNLEG IP  LG+L  LQ+
Sbjct:    1 MAQTDRDALVALYRATGGENWRESQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANLQQ 73          
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 4.800e-25
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 1
Query:    4 MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKLHMTNNNLEGTIPKELGKLTALQELVLYDNHL 246
            MA TDR+ALV L+R+TGG  W  R+NWDTDA + TWHGV+V+ QGRVVKL + +NNLEG IP  LGKL  LQ+L L  N L
Sbjct:    1 MAQTDRDALVVLYRATGGENWRERQNWDTDADLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKL 81          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10253.274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6T0_9PHAE6.430e-3070.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD4_ECTSI5.740e-2973.68Putative leucine rich repeat protein n=1 Tax=Ectoc... [more]
A0A6H5KQP2_9PHAE1.540e-2871.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI3.780e-2877.03LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FXI0_ECTSI6.990e-2770.59Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A6H5KVC7_9PHAE1.710e-2665.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF46_ECTSI4.030e-2670.27LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KQQ0_9PHAE1.390e-2565.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK91_9PHAE3.440e-2563.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBY3_ECTSI4.800e-2562.96Hypothetical leucine rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10253contigEcto-sp13_S_contig10253:470..1342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.4
Seed ortholog evalue7.8e-25
Seed eggNOG ortholog2880.D8LHD4
Model size246
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGs2R960@2759,COG4886@1
Cds size243
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.0632906-UTR-Ecto-sp13_S_contig10253:469..4721681462519.0632906-UTR-Ecto-sp13_S_contig10253:469..472Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10253 470..472 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462519.0816464-CDS-Ecto-sp13_S_contig10253:472..6471681462519.0816464-CDS-Ecto-sp13_S_contig10253:472..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10253 473..647 +
1681462519.090733-CDS-Ecto-sp13_S_contig10253:1274..13421681462519.090733-CDS-Ecto-sp13_S_contig10253:1274..1342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10253 1275..1342 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10253.274.1prot_Ecto-sp13_S_contig10253.274.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10253 473..1342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10253.274.1

>prot_Ecto-sp13_S_contig10253.274.1 ID=prot_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
MASTDREALVALFRSTGGAGWWRRRNWDTDAAIATWHGVEVDHQGRVVKL
HMTNNNLEGTIPKELGKLTALQELVLYDNHL
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mRNA from alignment at Ecto-sp13_S_contig10253:470..1342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10253.274.1 ID=mRNA_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10253:470..1342+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAATGGCTTCCACGGACCGTGAAGCACTGGTTGCCCTGTTTCGTTCGAC CGGCGGGGCTGGATGGTGGAGAAGACGCAACTGGGACACAGATGCTGCCA TAGCGACATGGCATGGAGTCGAAGTCGACCACCAGGGCCGGGTGGTCAAG CTTCATATGACCAATAACAACCTCGAAGGTGTACAAGAGTTCTTCGGCAT TTAGTCTACTGCTTGTACGTGCTTTCGTGTAGAGATAAATGTGCTTGACC ACATCGGCGAGATTCACACACCGGACTCATGCAAAATCGATCGGGAAAGA GCCATCAAATCACGTGTGGACTCACCGCTTATCTAGTTGTGCTCAACGTT GAGCTCCTGCAGTGCTGAAAGGTGCCCCAGCTCCGATGGGATGGGGCCTG CAAGCGGACGGGTCGAACGGAGTAGCGGAGCGGGACAAAAAAAATAATGC CCCGCTTTCTAGAACATCGGTCCCGCCTACGCATACGCGGGATTCATGTA TGTTAAGAACTCGAAGGAAAGTAAAACGCATTTTGAAATGTTCAACTCAC CATCTAACTTGTTATCGTCGAGGTAGAGGTTCTGGAGGGCGCCAAGATTT CCTAGCTGCGGCGGGATATGGCCTGTAGACGGGGAAGTCAACGCAGGGCA GTTGGGCAGGGTAGACAAAAAGTTATCCCGCAAGTTCTGAAATTTCGTAC CCGCCTACTAGTTGGCGTCCACTCACGCAGATTCGTCTAGAAGCCGGGAT GTTTCTATTTTCCCCGCTATATACTCATCCCACCACGCTGTTGTGAATCG CACAGGAACGATACCGAAGGAGCTAGGGAAGCTAACTGCGCTACAGGAGC TTGTTCTGTACGACAACCATCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10253:470..1342+

>mRNA_Ecto-sp13_S_contig10253.274.1 ID=mRNA_Ecto-sp13_S_contig10253.274.1|Name=mRNA_Ecto-sp13_S_contig10253.274.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10253:470..1342+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTTCCACGGACCGTGAAGCACTGGTTGCCCTGTTTCGTTCGACCGG
CGGGGCTGGATGGTGGAGAAGACGCAACTGGGACACAGATGCTGCCATAG
CGACATGGCATGGAGTCGAAGTCGACCACCAGGGCCGGGTGGTCAAGCTT
CATATGACCAATAACAACCTCGAAGGAACGATACCGAAGGAGCTAGGGAA
GCTAACTGCGCTACAGGAGCTTGTTCTGTACGACAACCATCTT
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