mRNA_Ecto-sp13_S_contig1023.256.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A6H5KKT3_9PHAE (U1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKT3_9PHAE) HSP 1 Score: 385 bits (988), Expect = 3.300e-131 Identity = 229/232 (98.71%), Postives = 229/232 (98.71%), Query Frame = 1 Query: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGRSKK 696 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEG PARRSQKEEFQPAA GAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGG SKK Sbjct: 1 MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGAPARRSQKEEFQPAAPGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGGSKK 232
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A835ZCC8_9STRA (U1-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCC8_9STRA) HSP 1 Score: 181 bits (460), Expect = 1.570e-51 Identity = 107/181 (59.12%), Postives = 130/181 (71.82%), Query Frame = 1 Query: 4 SKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED--RISGALKKPSAEDEFDTRVRE 540 S DLG KQV NV RR+WD + YE KAKER+E+GD+ +E KEEFQPA GA GPAGS RAYLK R KVDL S+L KTQV+T+A+ S QGG++CE+CKC LKDSI YLDHINGKKHQR LG+SMRVERS+V VK++L + R ED + SGA +K SA E++ R+ E Sbjct: 7 SDDLGDKQVSNV-VRRSWDVELYEKKAKERLERGDEVEEARPASSKAALNKEEFQPAPDGAQGPAGSRRAYLKARTEKVDLESRLHKTQVITSAAASSSQGGYWCEVCKCLLKDSIAYLDHINGKKHQRALGFSMRVERSSVGSVKEKLDKLRARAEDAAKASGAPRK-SAVQEYEERLAE 185
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A7S2WR40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WR40_9STRA) HSP 1 Score: 163 bits (412), Expect = 1.600e-44 Identity = 122/218 (55.96%), Postives = 156/218 (71.56%), Query Frame = 1 Query: 46 RRTWDRDYYEAKAKERI--EQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQDPEMAAMMGFGGFGGRSK 693 RRTWD YE KA+ER+ E+G + + P R ++EF+ A AAGPAGSARA+L R R + L GKTQ++ + GGWYC++C+C LKDS NYLDHINGKKHQR+LG+SMRVERSTV QV +R K+ K+R+ED +S A + P+A + ++ R+ A++ EXXXXXXXXXXXXXXXXXXXXXX ME DP++ A MGFGGFGG +K Sbjct: 13 RRTWDVKEYEKKAQERLAREEGGIVEGDVDDRPVR--DRDEFRRAEDQAAGPAGSARAFLNNRNRALGLEKAAGKTQIIADNGLRQKGGGWYCDVCECLLKDSSNYLDHINGKKHQRKLGFSMRVERSTVGQVSERFKLAKKRKEDEMSVATR-PTAIEAYEQRIAAAQEEEXXXXXXXXXXXXXXXXXXXXXX--MEGMDPDLMAAMGFGGFGGGAK 225
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: W7U2Z2_9STRA (Zinc finger matrin-type protein 2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U2Z2_9STRA) HSP 1 Score: 157 bits (397), Expect = 3.100e-42 Identity = 105/225 (46.67%), Postives = 134/225 (59.56%), Query Frame = 1 Query: 34 NVESRRTWDRDYYEAKAKERIEQ---GDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-------DPEMAAMMGFGGF 678 NVE RRTWD +++E AKER+E+ GD ++K P ++EEFQ A AGAAGP GS RAYLK RE + L K+GK QVVT +S P QQGG++C+IC+C LKDS+ YLDHINGKKHQ+ LGYSMRVER V +VK+RL K+RE+++ + E D ++ E +E E DPEMAA+MGFGGF Sbjct: 17 NVE-RRTWDLEHFEKIAKERLEKEASGDVEKKK----PGFVRKREEFQAAEAGAAGPEGSKRAYLKHREADLGLEEKVGKIQVVTGSSAPHQQGGYWCDICQCLLKDSMAYLDHINGKKHQKALGYSMRVERVGVDRVKERLNALKRREDEKKKAGPR----ESAIDAYQKKLEKDEAIKAQWKEARKEARINVIQRATKEEESTVEEEGGVDPEMAALMGFGGF 232
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: W2PLF3_PHYPN (U1-type domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PLF3_PHYPN) HSP 1 Score: 153 bits (386), Expect = 1.650e-40 Identity = 124/236 (52.54%), Postives = 154/236 (65.25%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ--------------DPEMAAMMGFGGFGGRSK 693 V NV +R+TWDR +YE A+ R E EK+E +S KEEFQ A GAAGPAGSARA+LK R K+ L S +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ +R+ D + KK A ++++ +++ AE+ XXXXXXXXXXXXXXXXXXX D EM AMMGFGGFGG K Sbjct: 13 VANV-TRQTWDRAHYEKLAQLRAE---GKLEKEETKKVIKSTKEEFQAANEGAAGPAGSARAFLKARTNKMSLESSVGTVKVVKSDDV-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQSASKRKWDPLMA--KKLDAMEDYEKKLKAAEEEXXXXXXXXXXXXXXXXXXXXALEQDKSDDADKKPEAADEALDADAEMMAMMGFGGFGGSKK 241
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A8J5JCN4_9STRA (zf-C2H2_jaz domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCN4_9STRA) HSP 1 Score: 150 bits (380), Expect = 7.800e-40 Identity = 112/226 (49.56%), Postives = 138/226 (61.06%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----DPEMAAMMGFGGFGGRSK 693 V NV +R+TWDR +YE A+ R E EK+E A +S KEEFQ A GAAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK+RL+ ++ KK A +E + RV+ XXXXXXXX + D EM AMMGFGGFGG K Sbjct: 16 VANV-ARQTWDRAHYEKLAQLRAE---GQLEKEETKKAIKSSKEEFQSANEGAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSEDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKNRLQNYE-----------KKLKAAEEEEARVKXXXXXXXXXXXXXXDTLDQDKNDDADKKPEAADEVPDADAEMMAMMGFGGFGGSKK 225
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A3R7GK79_9STRA (U1-type domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GK79_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.330e-39 Identity = 112/238 (47.06%), Postives = 143/238 (60.08%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ----------------DPEMAAMMGFGGFGGRSK 693 V NV +R+TWDR++YE AK R E E++E +S KEEFQ A AAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+ +R+ D + KK +++ +V+EAE+ E XXXXXXXX + D EM +MMGFGGFGG K Sbjct: 13 VANV-ARQTWDREHYEKLAKLRAE---GQLEQEETKKVIKSSKEEFQAADDRAAGPAGSARAFLKARTSKMSLENSVGTVKVVKSDDL-SKNGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWDPLM--TKKLDTMADYEKKVKEAEEEEARIKRQKXXXXXXXXLGDQQTSEVKSEKATDKKPEAEDEAVPDADTEMMSMMGFGGFGGSKK 243
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A0P1ATE8_PLAHL (Zinc finger matrin-type protein 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATE8_PLAHL) HSP 1 Score: 150 bits (378), Expect = 8.990e-39 Identity = 104/232 (44.83%), Postives = 132/232 (56.90%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXX----------MEFQDPEMAAMMGFGGFGGRSK 693 V NV R+TWDR +YE A+ R E G EK+ S KEEFQ A AAGPAGSARA+LK R K+ L + +G +VV + S+ G+YCE+C+C LKDS+ YLDHINGKKH R+LGYSMRVERSTV QVKDRL+ +R+ D + KK A +E++ +++ AE+ E + D EM AMMGFGGFGG K Sbjct: 66 VSNV-VRQTWDRAHYEKLAQLRAEGG---VEKETTKKVIHSSKEEFQTADESAAGPAGSARAFLKARTAKMSLETSVGTVKVVKSDEL-SKNSGYYCEVCECSLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKDRLQSAAKRKWDPLM--TKKLDAMEEYEKKLKAAEEAEICLKRQKKEQRKAKKCESEDLSQDRVTAEETVDVVSESDAEMMAMMGFGGFGGSKK 290
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A3M6VG09_9STRA (U1-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VG09_9STRA) HSP 1 Score: 144 bits (364), Expect = 3.070e-37 Identity = 112/240 (46.67%), Postives = 147/240 (61.25%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIE-QGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREEDRISGALKKPSAEDEFDTRVREAEDNEXXXXXXXXXXXXXXXXXXXXXXXXMEFQ-----------------DPEMAAMMGFGGFGGRSK 693 V NV +R+TWDR++YE A+ R Q + Q K S KEEFQ A GAAGPAGSARA+LK R K+ L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LG+SMRVERSTV QVK+RL+ +R+ D I+ KK ++++ +++ ++ E XXXXXXXXXXX M+ + EM AMMGFGGFGG K Sbjct: 14 VANV-ARQTWDREHYEKLAELRANGQFETTQTKK----VIASSKEEFQTANEGAAGPAGSARAFLKARSAKIALENSVGTIKVVKSDEI-SKHGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGFSMRVERSTVDQVKNRLQSASKRKYDFIT--TKKLDTMEDYEKKLKAIKEEEAQAXXXXXXXXXXXKLGKQVSDLVMKHHNVVETISDADDKVPDDTEAEMMAMMGFGGFGGSKK 245
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Match: A0A6A3XVT7_9STRA (U1-type domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3XVT7_9STRA) HSP 1 Score: 143 bits (361), Expect = 8.880e-37 Identity = 84/150 (56.00%), Postives = 107/150 (71.33%), Query Frame = 1 Query: 28 VKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSQKEEFQPAAAGAAGPAGSARAYLKTRERKVDLSSKLGKTQVVTAASTPSQQGGWYCEICKCGLKDSINYLDHINGKKHQRELGYSMRVERSTVSQVKDRLKMHKQREED 477 V NV +R+TWDR++YE A+ R D EK+E S K+EFQ A GAAGPAGSARA+LK R K++L + +G +VV + S+ GG+YCE+C+CGLKDS+ YLDHINGKKH R+LGYSMRVERSTV QVK RL+ +R+ D Sbjct: 13 VANV-TRQTWDREHYEKLAQLRA---DGQLEKEEAKKVINSSKQEFQAANEGAAGPAGSARAFLKARTSKMELETSVGTIKVVKSDDA-SKSGGYYCEVCECGLKDSVAYLDHINGKKHLRKLGYSMRVERSTVDQVKSRLQSASKRKWD 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1023.256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1023.256.1 >prot_Ecto-sp13_S_contig1023.256.1 ID=prot_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=233bp MSKDLGYKQVKNVESRRTWDRDYYEAKAKERIEQGDDYQEKDEGGPARRSback to top mRNA from alignment at Ecto-sp13_S_contig1023:7050..10505+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1023.256.1 ID=mRNA_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3456bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1023:7050..10505+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1023:7050..10505+ >mRNA_Ecto-sp13_S_contig1023.256.1 ID=mRNA_Ecto-sp13_S_contig1023.256.1|Name=mRNA_Ecto-sp13_S_contig1023.256.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1023:7050..10505+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |