Homology
BLAST of mRNA_Ecto-sp13_S_contig10208.229.1 vs. uniprot
Match: D8LT37_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT37_ECTSI) HSP 1 Score: 598 bits (1541), Expect = 5.070e-211 Identity = 318/340 (93.53%), Postives = 326/340 (95.88%), Query Frame = 1 Query: 1 VSELLRLISEANLDAFSRHSLEDRANAARNLQAAEVRRMLDLKLSHAAAVNGGACKDEGLKTLNEREATAWAAKLRLKAALNMDRHYASLEPGGLPASLRRRNPTSSHPSDFLDDGTPATPQGAMQTFGRACPPEDNETGAIRHWKRGATETEEVLDLRRDVREWQSSCGRRARFSYLCERWVGVASDIEEKQRQKRMIEAAEGEKRMKERHAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEGAQLAGGDRYWGLIRELHRLRAIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQRQIDRLLEM 1020
VSELLRLISEANLDAFSRHSLEDRA AA+NLQ +VRRMLDLKLSH+AAVN GACKDEGLK LNEREATAWAAKL+LKAALNMDRHYASLEPGGLPASLRRRNPTSS PSDFLDDGTPATPQGAMQTFGRACPPEDNE+GAIR WKRGA ETEEVLDLRRDVREWQSSCGRRARFS LCERWVGVASDIEEKQRQKRMIEAAE EKRM+ER AAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREE AQLAGGDRYWGLIREL RLR IEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQ+QIDRLLE+
Sbjct: 230 VSELLRLISEANLDAFSRHSLEDRAMAAQNLQVVDVRRMLDLKLSHSAAVNSGACKDEGLKRLNEREATAWAAKLKLKAALNMDRHYASLEPGGLPASLRRRNPTSSQPSDFLDDGTPATPQGAMQTFGRACPPEDNESGAIRLWKRGAKETEEVLDLRRDVREWQSSCGRRARFSDLCERWVGVASDIEEKQRQKRMIEAAEREKRMRERQAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEERKRLEGEELERMSREEAAQLAGGDRYWGLIRELQRLRVIEEERRRAWEVRIRATKEKMVAVRCISELSDFTHATPPIDPELQQQIDRLLEI 569
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10208.229.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
| Match Name | E-value | Identity | Description | |
|---|
| D8LT37_ECTSI | 5.070e-211 | 93.53 | C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 1 |
| Start | 0 |
| Model size | 1023 |
| Hectar predicted targeting category | other localisation |
| Exons | 7 |
| Cds size | 1023 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1681462515.1281955-CDS-Ecto-sp13_S_contig10208:17..113 | 1681462515.1281955-CDS-Ecto-sp13_S_contig10208:17..113 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 18..113 + |
| 1681462515.1393592-CDS-Ecto-sp13_S_contig10208:603..734 | 1681462515.1393592-CDS-Ecto-sp13_S_contig10208:603..734 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 604..734 + |
| 1681462515.14908-CDS-Ecto-sp13_S_contig10208:929..1144 | 1681462515.14908-CDS-Ecto-sp13_S_contig10208:929..1144 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 930..1144 + |
| 1681462515.1579926-CDS-Ecto-sp13_S_contig10208:1841..1992 | 1681462515.1579926-CDS-Ecto-sp13_S_contig10208:1841..1992 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 1842..1992 + |
| 1681462515.1722019-CDS-Ecto-sp13_S_contig10208:2209..2437 | 1681462515.1722019-CDS-Ecto-sp13_S_contig10208:2209..2437 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 2210..2437 + |
| 1681462515.1829283-CDS-Ecto-sp13_S_contig10208:2921..3032 | 1681462515.1829283-CDS-Ecto-sp13_S_contig10208:2921..3032 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 2922..3032 + |
| 1681462515.190713-CDS-Ecto-sp13_S_contig10208:3551..3642 | 1681462515.190713-CDS-Ecto-sp13_S_contig10208:3551..3642 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig10208 3552..3642 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10208.229.1 >prot_Ecto-sp13_S_contig10208.229.1 ID=prot_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=341bp
VSELLRLISEANLDAFSRHSLEDRANAARNLQAAEVRRMLDLKLSHAAAV
NGGACKDEGLKTLNEREATAWAAKLRLKAALNMDRHYASLEPGGLPASLR
RRNPTSSHPSDFLDDGTPATPQGAMQTFGRACPPEDNETGAIRHWKRGAT
ETEEVLDLRRDVREWQSSCGRRARFSYLCERWVGVASDIEEKQRQKRMIE
AAEGEKRMKERHAAKLLRKRQLAELRANAGSRATGEERRKVERDKEAEER
KRLEGEELERMSREEGAQLAGGDRYWGLIRELHRLRAIEEERRRAWEVRI
RATKEKMVAVRCISELSDFTHATPPIDPELQRQIDRLLEM* back to topmRNA from alignment at Ecto-sp13_S_contig10208:18..3642+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig10208.229.1 ID=mRNA_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3625bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10208:18..3642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTGAGCTACTTCGTCTCATTTCCGAAGCCAACCTTGACGCCTTTAG
CCGACACTCTCTCGAGGATCGTGCTAATGCCGCCCGAAATCTTCAGGTGC
GACTTAGTAGTAGTTTCTGCCGCTGCTCCGTTTGTTTTTAGGGAGTTTCG
TGCACCTCATCCGTGCAAATTCGATGTTCAGAGTCTGAAGCTGGGACGCC
TGTTTCGACGGAGCATTGGAAAAACTTGGATGCTCCTGGTGAAATGCACG
CCTCCCTTGGCCCTTTTGCGAGAAACAATGTCATCTGGGAAGGTCAAGCC
CATGAAAGTCACCGGTACGACGTGGAAGGACTGAGAGAAACCGATGTTGG
TGCCCCCGTATGGATCAGGAGTGAATCCTCTACAAAATAGGTTTGGAGAG
CGTTTCCGTCCACCTGATGCATTAGATTTTATCCAGAATATTTTCAGCGG
CAATCTCTTCTGGCGCTCTCATGTCCTGCGCACTTTGCGCACAAGACGCG
AAGCACGACAGGTGTGCACGCCAATTTTTCTCAGATCGCTTCCCGTCCTC
GTTGTGCCACGGCTCATGTCTAACCGTATTGTCCAGGCGGCGGAGGTCAG
ACGGATGCTAGATCTGAAGCTATCCCACGCTGCCGCGGTCAATGGTGGAG
CGTGCAAGGACGAAGGATTGAAGACCTTGAACGAGCGGGAGGCTACCGCA
TGGGCAGCGAAACTAAGGTCAGACTCCACTGCTGCGCTTGTCACAGCCTA
CCCGTTTTCCACATCTTCTTCACACATAAGATGTTCTGCAAAATGACGGT
CGGAGTGAATAGTATTCGACCGCATTAGTTCAGATGATAAGTGCGGTTCC
TCCATTAAGTTAATCTTCCGCTTGCGCACGTACCCGTGCTTGCTCGTCGG
GCCCTTGAATAGGTTGAAAGCAGCCTTGAACATGGACAGGCACTACGCCT
CGTTGGAGCCCGGGGGGCTGCCGGCGTCCCTGCGGCGGAGGAACCCAACC
TCGAGCCATCCTTCGGATTTTCTAGACGACGGCACCCCGGCGACGCCCCA
GGGGGCAATGCAGACGTTTGGGCGTGCCTGCCCGCCGGAGGACAATGAGA
CTGGTGCTATCCGACATTGGAAACGAGGTGAGAGCTATGGAACGCTACCA
TTCACATAAATATCATCGCTGACCGTTTCTCGTTTACTCTTGCACCTCGG
GCCAGTGCAGAATCTGAAAGCGACAAGAAATTTAAGAGTTCCCGCTGTCG
TTTGAGTAGCGCATTGTTCCAGTTCTTTGAAACGGAAGTCGAACAGTATT
GTAGGGCGGGCTTGACAAGCGAGAGATATCACGTACCTGCCGTTTTTTGG
TCAGTTTCCGTTTCCCCTTAACGACATTGTGGGTGGGCCAAAATATTGGT
ATCTTGACGCTTTCGCTCAAGAACTATTTCGTATCCCCAGGATCCTCAGG
ATCCTCAGGAACAAGTAAGTATACTAATTTCCTGCCGATGCAATTTAAAC
CTCTGTCTGACTACATTTTCACACAGCAACTTGAGACTCCATTAGTGCTT
CACTCCTACATGCTACGGGGACAAGGAGTATTTGGAGATGTTGGGCGCTC
GGCGTATTGGTGGCCGTGAAGTCGCCGTCGTGCCGCTTGGAGGGCGCTTT
CCCACAATCCCTAGAGAGACCGCTGCTGTACGCGTCTTGATGATCTACAC
GCGAGCAACGCGGTTGTTTCGTCGGCCCAGTACGCCGACCTGATATTTTT
CAACCACACAATCAACCTGACGTCGGTACCCCGATGCATCGACGACGTGC
TGTTTTCGGTCTTGGAACCCAAAGGGGCCACGGAAACCGAGGAAGTACTC
GACTTACGACGAGACGTGCGAGAGTGGCAGTCTTCTTGCGGGAGACGGGC
ACGCTTCTCCTACCTGTGCGAGCGATGGGTCGGTGTAGCCTCTGACATCG
AAGAAAAGCAGAGGCAGAAGCGGATGTGAGTTGAGATATTTGGGGAGAAC
GGTCTTCCATTGGATTGACTTGTGGAAATACTTTGTTTGTACAGTTGGAT
CACACCCGATGACAGCACGCTTCGAAGCTACTGGCAAAGACCCGTCCCCA
ATGAAGATGATCGAACAACCGACTACAGCAGTCGGATACGATATCCATAG
ACCGCACCCGGCACTCACTACACAAAGTGCACATGATACCAGGATTGAAG
CCGCGGAAGGCGAAAAACGCATGAAGGAGCGGCATGCAGCGAAACTGCTG
CGCAAGCGTCAGCTCGCTGAGCTTCGCGCCAACGCTGGCTCCAGGGCAAC
CGGGGAAGAACGGAGGAAGGTCGAGAGGGACAAGGAGGCGGAAGAGAGAA
AGCGGTTGGAAGGGGAGGAGCTGGAGCGTATGAGCCGGGAGGAAGGCGCA
CAGCTCGCGGGGGGAGACAGGTGCGGCTCGAGGTTGACACTGTTTTGCTT
CAAATCCTGTCGTGGCTTTGATTTTGTGTACGGAGTTGCCACCATCCCCG
TGTTACTGTACGCACAACTTTACTTTTCACTTATATCCATGGATTTTGCC
TTCCTGTCGTCGAATGTTGAACGCGATGGTGCCTGAGCTTGGTGGGACAC
ACTGCAAACGTGGGCTCGCTGTGCCCGTCTGCCGATCGTACGAGAAGCAC
ATATAATAGTGGAGTATTGGAGAATGTATCGGATGCTGTCGTCCAAAGGA
CGTCTTGTGTCGCTGACCGGGCGTATTCTAGAGGTCACGAGCTTGAGTTG
TTCGGTCTACTCTCAGTCAAAATCTTGCAAGTTCCAATACTTTCAAAATG
AGAAGTGTCTACCACTACACGAGCGAACGGTCTATAATTGATGACCGCGA
CATGAACGTTTCGGGTGTGTACCTACAACTTTTTGGTGGTGGTGCTCTAC
CCAGATATTGGGGGCTCATTCGCGAGTTGCACCGGCTCCGCGCTATTGAA
GAGGAACGGCGGCGTGCTTGGGAAGTGAGAATCAGAGCAACCAAGGAGAA
GATGGTAGCAGTCCGGTGAGTCAAGTGGGTACTGACTCAAGCCCATACCC
GGGTCCCTGTTCATCTCGCCCCCCGCCAGGTCTAACGTGTTCCAATATCT
TCATTGAGATAGAAACCATGCGTTGTTTCACAATTTTTTTCCCCATTACC
GTGGGATTGAACTTAGACAGGGTCCGAAACGATGTAGTCGTCACTGGGTC
ACATGCTTGCCTTTCTTTCGCCCCCTTCTCCTCCTCCTCATCTCTCTGTC
TTTCCCTTTCTCGTCCGGTTCTCTTTATTCAATCCGTATGGTTAGTCTGG
ATCCCCTTAGCCATATTGTGCGTGGGTCTTTGATGGGAAACGCTCGCCAT
CATTCTGACCGATCGCATGAGCGCCAACTTCCCCAGTTGACCGGCGCATA
CATGGTTTGCTCTTCGAGAGACATACGTCCAAATTCTGGCCTACGTTTCT
TGAAGCGCGGTCATGACAATCTTGTTTACCATCGGGTGAACGGTTCGCGA
CAGCAACTCTTGTGTGTGCTTCTCTTGCCCCCAGGTGCATATCGGAGCTG
AGCGACTTCACCCACGCGACACCGCCGATCGACCCGGAGCTCCAGCGGCA
GATTGACCGGTTGTTGGAGATGTAG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig10208:18..3642+ >mRNA_Ecto-sp13_S_contig10208.229.1 ID=mRNA_Ecto-sp13_S_contig10208.229.1|Name=mRNA_Ecto-sp13_S_contig10208.229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10208:18..3642+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCTGAGCTACTTCGTCTCATTTCCGAAGCCAACCTTGACGCCTTTAG
CCGACACTCTCTCGAGGATCGTGCTAATGCCGCCCGAAATCTTCAGGCGG
CGGAGGTCAGACGGATGCTAGATCTGAAGCTATCCCACGCTGCCGCGGTC
AATGGTGGAGCGTGCAAGGACGAAGGATTGAAGACCTTGAACGAGCGGGA
GGCTACCGCATGGGCAGCGAAACTAAGGTTGAAAGCAGCCTTGAACATGG
ACAGGCACTACGCCTCGTTGGAGCCCGGGGGGCTGCCGGCGTCCCTGCGG
CGGAGGAACCCAACCTCGAGCCATCCTTCGGATTTTCTAGACGACGGCAC
CCCGGCGACGCCCCAGGGGGCAATGCAGACGTTTGGGCGTGCCTGCCCGC
CGGAGGACAATGAGACTGGTGCTATCCGACATTGGAAACGAGGGGCCACG
GAAACCGAGGAAGTACTCGACTTACGACGAGACGTGCGAGAGTGGCAGTC
TTCTTGCGGGAGACGGGCACGCTTCTCCTACCTGTGCGAGCGATGGGTCG
GTGTAGCCTCTGACATCGAAGAAAAGCAGAGGCAGAAGCGGATGATTGAA
GCCGCGGAAGGCGAAAAACGCATGAAGGAGCGGCATGCAGCGAAACTGCT
GCGCAAGCGTCAGCTCGCTGAGCTTCGCGCCAACGCTGGCTCCAGGGCAA
CCGGGGAAGAACGGAGGAAGGTCGAGAGGGACAAGGAGGCGGAAGAGAGA
AAGCGGTTGGAAGGGGAGGAGCTGGAGCGTATGAGCCGGGAGGAAGGCGC
ACAGCTCGCGGGGGGAGACAGATATTGGGGGCTCATTCGCGAGTTGCACC
GGCTCCGCGCTATTGAAGAGGAACGGCGGCGTGCTTGGGAAGTGAGAATC
AGAGCAACCAAGGAGAAGATGGTAGCAGTCCGGTGCATATCGGAGCTGAG
CGACTTCACCCACGCGACACCGCCGATCGACCCGGAGCTCCAGCGGCAGA
TTGACCGGTTGTTGGAGATGTAG back to top
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