mRNA_Ecto-sp13_S_contig10182.207.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: A0A6H5L5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T2_9PHAE) HSP 1 Score: 602 bits (1552), Expect = 1.330e-209 Identity = 353/450 (78.44%), Postives = 369/450 (82.00%), Query Frame = 1 Query: 1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDVPGPWSHGNFSNGVPLSSKGSHNTSTILTSLTSESSPTQLGWAGGGSAGHIGRVTGCKPGQGVVQALLRLAAVEIGVFRGVMRFM 1350 SSREATRRLLGGD GGKLVYDYVNMVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGHFQILKILLAAGANPNVADNHAVT VYNRIGVTRLLLDASASSLEVRDS+HGITPLAWASKFSF TMLRILLS GADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXX DS DNEGADAGS IG GDPPRH G QSPPILPGAVN++GWLKNETLATRIQLALS ARKDRTWRRRGWLVVLARRQAMAMAVVPGTT SKT VSG+KS S+MTIPRIL TTG+DADTGRRV+ A+HQEGTRQGIVR SSD+PH SNDVPG WSHGN N VPL SKGSHNT+ I TS SESS QLGWAGGGSAGHI +VTG PGQGVVQALL LAAVE+GVFRGVMR++ Sbjct: 204 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHIYDTHARTDDSYTPLHLAV-----------------VYNRIGVTRLLLDASASSLEVRDSFHGITPLAWASKFSFATMLRILLSMGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSAIGLGDPPRHKGPQSPPILPGAVNRTGWLKNETLATRIQLALSNARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKTSVSGNKSDSKMTIPRILATTGVDADTGRRVHLASHQEGTRQGIVRSSSDLPH------SNDVPGGWSHGNLGNSVPLQSKGSHNTA-IFTSQISESSSMQLGWAGGGSAGHIDKVTGWTPGQGVVQALLGLAAVEVGVFRGVMRYI 629
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7M3_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7M3_ECTSI) HSP 1 Score: 476 bits (1226), Expect = 3.940e-161 Identity = 328/370 (88.65%), Postives = 335/370 (90.54%), Query Frame = 1 Query: 1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKT---FVSGDK-SHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDV 1098 SSREATRRLLGGD GGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADN AVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX YNRIGVTRLLLDASASSLEVRDSYHGITPLAWASK SFT MLR+LLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXX DSADNEGADAGS IG GDPPRHAG QSPPIL GAVN+ G L NE LATRI+LALS+ARKDRTWRRRGWLVVLARRQAMAMAVVPGTT SK FV G+K S SRMT PRIL TTG+DADTGRRVY A HQEGTRQG SSD+PHGNEVD SND Sbjct: 213 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNLAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKLSFTLMLRVLLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXDSADNEGADAGSAIGLGDPPRHAGPQSPPILLGAVNEIGRLNNEELATRIRLALSKARKDRTWRRRGWLVVLARRQAMAMAVVPGTTSRASKAYYAFVRGNKKSESRMTTPRILATTGVDADTGRRVYLAIHQEGTRQGNGSSSSDLPHGNEVDKSNDA 582
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: A0A6H5L664_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L664_9PHAE) HSP 1 Score: 442 bits (1136), Expect = 1.360e-146 Identity = 313/455 (68.79%), Postives = 335/455 (73.63%), Query Frame = 1 Query: 1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYNRIGVTRLLLDASASSLEVRDSYHGITPLAWASKFSFTTMLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRILGTTGLDADTGRRVYFATHQEGTRQGIVRISSDVPHGNEVDTSNDVPGPWSHGNFSNGVPLSSKGSHN-----TSTILTSLTSESSPTQLGWAGGGSAGHIGRVTGCKPGQGVVQALLRLAAVEIGVFRGVMRFM 1350 SSREATRRLLGGD GGKLVYDYVNMVSQDVATV GL QGGAFLDWQD+HRRR+PLHRAVYFGHFQILKILLAAGANPNVADNHAVT XXXXXXXXXXXXXXXXXXXXXXX RIGVTRLLLDASASSLEVRDS+HGITPLAWASK SFTTMLRILLS GADVNSRSP XXXXXXXXXXXXXXXXXXXXXXXXX DS DNEGADAGSV G GDPP H G QSPPILPGA NQ+G KN LATRIQLALS+ARKDRTWRRRGWLVVLARRQAM MAVVPGTT SKT+V G++ H RMTIPRI TG+D Q+ TR S+D G +T P H ++ V S + T T TSL S S QLG GG G++G TG P +G ++ LL LAA+E GVFR VMRF+ Sbjct: 211 SSREATRRLLGGDRGGKLVYDYVNMVSQDVATVCGLAQGGAFLDWQDNHRRRSPLHRAVYFGHFQILKILLAAGANPNVADNHAVTPLHMVAVKGCEAEAAEXXXXXXXXXXXXXXXXXXXXXXXXXXRIGVTRLLLDASASSLEVRDSFHGITPLAWASKLSFTTMLRILLSMGADVNSRSPXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSLDNEGADAGSVTGLGDPPGHTGPQSPPILPGAANQTGRPKNGALATRIQLALSKARKDRTWRRRGWLVVLARRQAMTMAVVPGTTSRASKTYVRGNQGHPRMTIPRIPVMTGVDGKMVVEDLTGADQKRTRVANETFSAD---GGGAETCR-KENPDLHCKQTSIVRGEGASSFHRFFDGTGTNFTSLLSAPSSAQLGSTGGDITGYVGSGTGWAPERGAIETLLWLAAMEEGVFRNVMRFV 661
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7L8_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L8_ECTSI) HSP 1 Score: 171 bits (432), Expect = 1.690e-46 Identity = 95/154 (61.69%), Postives = 106/154 (68.83%), Query Frame = 1 Query: 499 MLRILLSTGADVNSRSPAXXXXXXXXXXXXXXXXXXXXXXXXXHPDSADNEGADAGSVIGCGDPPRHAGHQSPPILPGAVNQSGWLKNETLATRIQLALSRARKDRTWRRRGWLVVLARRQAMAMAVVPGTTCSVSKTFVSGDKSHSRMTIPRI 960 MLR+LL+ GADVNSRS A PD DN+GADAGSV G GDPPRH G QSPPILPGAVN++G LKNE LATRI+LALS+ARKDRTWRRRGWLVVLA RQAMAM +VP TT SKT G + SRMT+PR+ Sbjct: 1 MLRVLLNAGADVNSRSSAGSTPLYWACRLNTADIVECLLLAGADPDYLDNQGADAGSVTGLGDPPRHTGRQSPPILPGAVNETGRLKNEALATRIRLALSKARKDRTWRRRGWLVVLATRQAMAMNMVPNTT-RASKTHARGIRRVSRMTMPRV 153
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Match: D7G7L7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L7_ECTSI) HSP 1 Score: 153 bits (387), Expect = 8.290e-41 Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1 Query: 1 SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRRRTPLHRAVYFGHFQILKILLAAGANPNVADNHAVT 258 SSREATRRLLGGD GGKLVYDYVNMVSQ+VATVYGLV+GGAFLDWQDSHRRR+PLHRAV FGH QIL+ILL GANPNVADN AVT Sbjct: 75 SSREATRRLLGGDRGGKLVYDYVNMVSQNVATVYGLVKGGAFLDWQDSHRRRSPLHRAVNFGHSQILQILLTTGANPNVADNLAVT 160 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10182.207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10182.207.1 >prot_Ecto-sp13_S_contig10182.207.1 ID=prot_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=451bp SSREATRRLLGGDGGGKLVYDYVNMVSQDVATVYGLVQGGAFLDWQDSHRback to top mRNA from alignment at Ecto-sp13_S_contig10182:3..1355+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10182.207.1 ID=mRNA_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:3..1355+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10182:3..1355+ >mRNA_Ecto-sp13_S_contig10182.207.1 ID=mRNA_Ecto-sp13_S_contig10182.207.1|Name=mRNA_Ecto-sp13_S_contig10182.207.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10182:3..1355+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |