Homology
BLAST of mRNA_Ecto-sp13_S_contig10041.64.1 vs. uniprot
Match:
D7FRV2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRV2_ECTSI)
HSP 1 Score: 661 bits (1705), Expect = 4.620e-232
Identity = 344/382 (90.05%), Postives = 354/382 (92.67%), Query Frame = 3
Query: 633 DETGTSNFQTVSNDTLFSVSCGGCSTVTPAPTAATTAAPTIFVGGEDCGALTVSAPSAPYLEGCYFDTRLTQSWYSEFVEVELPSFTQDGSLAAGQLWISWLSYATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEAYPGNTTWDCDLDGDYSTTFGIEKTKFSVTCGCATGSAQGGTLSESPXXXXXXXXXXXXXXXGCMAGDPFLVTLPAVPQVEGCYVDSNLNDTAGYPIYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFGTEEPRVICSRGMDGSDGINGHPAHEVASAYDDTPGVIFWHCDLEGTGNVSYINASSSIFRIECGCASSLDFNRAMGRENANQRSLRTTLVLFS-LSMAMGVVLGAL 1775
DETGTSNFQTVSNDTLFSVSCGGCS+ TPAPTAATTAAPTIF+GGEDCGALTVSAPSAP++EGCYFDTRLTQSWYSEFVE+ELPSFTQDGSLAAGQLW+SWL+YATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEA P NTTWDCDLDGDYSTTFGIE+TKFSVTCGCATG XXXXXXXXXXXXXXX C+AGDPFLVTLPAVPQVEGCYVDSNLNDTAGY IYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFG EEPRVICSRGMD SDG NGHPAH VASAYDDTPGVIFWHCDLEGTGNVSY+NASSSI RIECGC SSLDFN A GR NANQRSL TTLVL S LSMAMGVVLGAL
Sbjct: 44 DETGTSNFQTVSNDTLFSVSCGGCSSATPAPTAATTAAPTIFIGGEDCGALTVSAPSAPHVEGCYFDTRLTQSWYSEFVEIELPSFTQDGSLAAGQLWLSWLTYATNETFWGLFFYPTFTSSSEQLVSVYCLSQEEVTEATPANTTWDCDLDGDYSTTFGIEETKFSVTCGCATGGXXXXXXXXXXXXXXXXXXXXXXXXXXCVAGDPFLVTLPAVPQVEGCYVDSNLNDTAGYAIYRSTGGAESADGQSFVLPTGDGPVEETYYKDWTLVLFEFGIEEPRVICSRGMDSSDGTNGHPAHGVASAYDDTPGVIFWHCDLEGTGNVSYMNASSSILRIECGCPSSLDFNGATGRANANQRSLGTTLVLLSSLSMAMGVVLGAL 425
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10041.64.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 4.62e-232 / Id = 90.05 Sequence D7FRV2_ECTSI
Match Name E-value Identity Description
D7FRV2_ECTSI 4.620e-232 90.05 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1
Start 1
Model size 2152
Hectar predicted targeting category signal peptide
Exons 8
Ec32 ortholog description expressed unknown protein
Ec32 ortholog Ec-23_004050.1
Cds size 1707
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462502.8609338-UTR-Ecto-sp13_S_contig10041:1..375 1681462502.8609338-UTR-Ecto-sp13_S_contig10041:1..375 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10041 2..375 -
1681462502.9536884-UTR-Ecto-sp13_S_contig10041:4687..4758 1681462502.9536884-UTR-Ecto-sp13_S_contig10041:4687..4758 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10041 4688..4758 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462502.869614-CDS-Ecto-sp13_S_contig10041:375..572 1681462502.869614-CDS-Ecto-sp13_S_contig10041:375..572 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 376..572 -
1681462502.881568-CDS-Ecto-sp13_S_contig10041:986..1140 1681462502.881568-CDS-Ecto-sp13_S_contig10041:986..1140 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 987..1140 -
1681462502.8919713-CDS-Ecto-sp13_S_contig10041:1689..2039 1681462502.8919713-CDS-Ecto-sp13_S_contig10041:1689..2039 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 1690..2039 -
1681462502.9002433-CDS-Ecto-sp13_S_contig10041:2414..2535 1681462502.9002433-CDS-Ecto-sp13_S_contig10041:2414..2535 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 2415..2535 -
1681462502.9086208-CDS-Ecto-sp13_S_contig10041:2807..3133 1681462502.9086208-CDS-Ecto-sp13_S_contig10041:2807..3133 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 2808..3133 -
1681462502.9177942-CDS-Ecto-sp13_S_contig10041:3552..3661 1681462502.9177942-CDS-Ecto-sp13_S_contig10041:3552..3661 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 3553..3661 -
1681462502.9351444-CDS-Ecto-sp13_S_contig10041:3809..3898 1681462502.9351444-CDS-Ecto-sp13_S_contig10041:3809..3898 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 3810..3898 -
1681462502.945082-CDS-Ecto-sp13_S_contig10041:4326..4687 1681462502.945082-CDS-Ecto-sp13_S_contig10041:4326..4687 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10041 4327..4687 -
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10041.64.1
>prot_Ecto-sp13_S_contig10041.64.1 ID=prot_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=569bp
MVHLVFVSHVTSFSIVWSSHVCFACFTPSSLRRQAHPASHPVSFQVYQTP SNLDSARRGILDGARTHIKNNFVNRGSTGRGLEDARALQDACPSGSPLFV SSSMFPSAEGCYVASDTLLSGGEPVYFITSATSPGQTILAAPKDPDDDDE GPLFWGVAYVTSSTAVLQCASVEDASLVNPADAAWMCDETGTSNFQTVSN DTLFSVSCGGCSTVTPAPTAATTAAPTIFVGGEDCGALTVSAPSAPYLEG CYFDTRLTQSWYSEFVEVELPSFTQDGSLAAGQLWISWLSYATNETFWGL FFYPTFTSSSEQLVSVYCLSQEEVTEAYPGNTTWDCDLDGDYSTTFGIEK TKFSVTCGCATGSAQGGTLSESPTPAPTPGPTPSPTVSGCMAGDPFLVTL PAVPQVEGCYVDSNLNDTAGYPIYRSTGGAESADGQSFVLPTGDGPVEET YYKDWTLVLFEFGTEEPRVICSRGMDGSDGINGHPAHEVASAYDDTPGVI FWHCDLEGTGNVSYINASSSIFRIECGCASSLDFNRAMGRENANQRSLRT TLVLFSLSMAMGVVLGAL* back to top mRNA from alignment at Ecto-sp13_S_contig10041:2..4758-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10041.64.1 ID=mRNA_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4757bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10041:2..4758- (Ectocarpus species13 EcNAP12_S_4_19m)CCAATCGGGACTCACTGATATCGCAGCCCCAAAGGAGCAGAGCTGAGTAT
GCCCACACGCACGTCACCTCC ATGGTACACCTTGTATTCGTGTCGCATGT
CACGTCGTTTTCCATTGTTTGGTCTTCGCATGTTTGCTTCGCATGCTTTA
CGCCATCATCATTGCGCAGACAAGCACACCCCGCTTCTCACCCCGTATCG
TTCCAGGTGTACCAAACACCATCCAACCTTGACTCAGCTCGCCGAGGGAT
TCTCGACGGAGCTAGAACGCACATCAAGAACAATTTCGTGAACAGGGGCA
GCACCGGGAGGGGGTTAGAAGATGCTCGTGCTCTCCAGGACGCGTGTCCC
AGTGGATCCCCCTTGTTCGTCTCGTCGTCGATGTTTCCTTCCGCTGAGGG
GTGCTACGTGGCCTCGGACACACTGCTTTCAG GTAGAGGAGAACGTACCG
TGTGCCTTGAACTGGGTTTGGTAACGCTCATGGCCTTGAGGTCGAGCTGT
TTTTTTAAGGTGAGGTAGACCTTACGTGTGTGCTTTAGCTGGTTTTGTTA
ATGCTCTTGGCGTTGATTGGGGGGTGGTTTCCCGGGGGGGGGGGGGGTTC
TGTTGTGGGGTCGTTTCATATTTTTTGTCATGGACGCCAGTCTACATGTT
TTGGTGGCCTGTGTGCTCATCGGCCTTGGAAACACAGAAGGAGGGCGTAG
AAACATGGACTTTTTTTTTGTTCCCTCCTACTCCTGCCGGGGGTGCCAGT
ACGCGCACGGTCCGGCCGTTTTCGAGATTGAAAAGTGAAACAAGGGGACA
GCCGTTGTGCACGTAGCTAAGTGTATGCTCCTGCTCATGATGTCACCCAC
GCACACACAGGTGGAGAACCGGTATATTTCATCACGTCTGCAACGTCACC
TGGGCAAACCATTCTCGCGGCCCCAAAAGATCCAGACGACGACGACGAG G
TGAGAGGGGACGGAGATGCCATCATGCCATGGGGTATTTTTTGCCTGATG
AGCGCTGGATATTCGTGACAGGACCGGCACCCGTATCGTTCACGTGTTTT
TTCGCGCATGATCACGCTCGCCCTTTATTGTCCCTGAACTATTGCAGGGA
CCACTTTTCTGGGGCGTGGCTTATGTGACGAGCAGTACCGCCGTCCTGCA
GTGTGCGTCAGTAGAGGATGCGTCATTGGTGAACCCCGCGGATGCTGCAT
GGATGT GTGAGTGTAACCGTTGATCAGGGTGGGGCTGACACGAGCTCTTG
TTGTCGTTGCCTTCGTAAATGTACAATCTCCGTCTTCTGCTCAGGACCCC
CTCGGATCCGTACTGGCCCAACCGAGAGTAGCCGCTGTACGTGGTCACAG
GATGATCTTCAAAATATCAGGCACCTAGAAAAGACTCAGAGAAATCATCC
AAGGGCCAGCAATCAGCCAAGTAACATGACCCTAGACAGCAGCAGGTAAG
GAGTCAAAACAAGTACTCTTGTCGGGCACCGTACACGTCAGGCGAAGAGC
ATGATATTGTTTGTCGGACAACGAAAGTGCGACTACCATCAAAGGCTTTC
CTGCGGTAGCCTGCAAACGATGCCCACTCGCTCTTTTTTCATGCTTGCTA
TTTTCATACAACCACCACATGCCAGGTGACGAAACGGGCACATCGAATTT
TCAGACGGTCAGCAACGACACGCTATTCTCGGTTAGTTGCGGCGGGTGTA
GCACGGTTACCCCCGCTCCAACAGCAGCCACGACCGCGGCGCCTACGATC
TTCGTCGGCGGCGAAGACTGCGGGGCACTAACGGTGTCAGCGCCTTCGGC
CCCCTACCTCGAAGGCTGCTACTTCGACACAAGGTTGACTCAGAGCTGGT
ACTCCGAGTTCGTGGAGGTCGAGTTGCCTAGCTTCACCCAAGATGGGTCT
CTGGCGGCGGGGCAGCTCTGGATATCATGGTTGAGCTACGCTACGAACGA
G GTGAGCCAGATACCGCCCCGGGGGCCTTGGCCACCCGGTCGCAACACAG
GACGCACCTCGTACTTCTGAAAAGCAGTTACTAGTGTGTGGCGTTCTATT
CCCAAATTCGGGCGCCCACGCAACTGTTTGAGCACTTCGACCGCTGACGC
ACCTCTTCTTCGAAATCACGTCTTTTTTTGCAGCCTCTGGCCGACAAGGA
GTCCTTGCACCCACCCCGTTTGATACATCTGTCTCTGTTGCTCCTTCTTT
TCCGTGCACTTTTCTCTCCCCAGACGTTCTGGGGCCTCTTCTTCTACCCC
ACTTTTACTTCCTCGAGCGAGCAATTGGTATCTGTCTACTGCCTCTCGCA
AGAAGAGGTAACGGAGGCTTATCCAGGGAATACAACCTGGGATT GTGAGT
TCGACAGCGTTTCCTTCCACACAAGGGTATGGGCGGAAAACAAACAAGAA
GTCCAGGCCAGAATCAATCGCAACCCTGACAAACGCCGCCGTGGCACGCA
GCAGGCAAGTCCGCGGTGCGCGAATCCCTCTCTGCGAGCGACCGCCGCGA
TCGATGATGATGGCCAAGAAGCTGGCCTCGATAATGCGTGCTTCCGGGAC
CTCGCCTGTTCACCCACTTCGATGCGTTCGCCTGCCTGAACATCAATGAT
CGGCATCACTCGTTTGACCGCCAATACTGCGTGAACCTCAAGCTGCAGTC
CCTTGAATTAATCTGGAGGACTGGGGAAACGTTCTACGACCTGACGGGTG
ATTGTCCCATGGCGCGCAGGTGATTTGGACGGGGACTACAGCACAACCTT
TGGAATAGAGAAGACGAAGTTTTCGGTCACGTGCGGCTGTGCTACGGGTA
GCGCTCAAGGAGGCACGTTGTCAGAGTCTCCGACTCCAGCTCCAACTCCT
GGTCCAACCCCTTCGCCGACCGTATCCGGCTGCATGGCCGGAGACCCGTT
TCTGGTCACTCTTCCAGCTGTACCTCAGGTGGAGGGGTGTTATGTGGACT
CCAACTTGAACGATACAGCAGGATACCCCATCTACAGGTCCACTGGCGGC
GCGGAGAGTGCCGACGGACAAAGCTTCGTACTACCAACGGGAGATGGGCC
TGTGGAGGAAACGTACTAC GCAAGTATTGGGTAGTAACCTGGATGATTTT
GTTCTAACGAACTGCTGCTGCTTGTTTTTATTCCGCGCTGCTGCTACATG
GGGTGTCCGTCCCCCATTTCTTCTGTCATTTTCCTCGCACCCACGCTCAG
CCCCGTACCTTGTTGAGGGTGTCTTGGCGAGTGGTAACCTTCAACCCAAA
TGGCCCGGTGACAGCACCCAAGAACACTACAGGAAATCGTCTCAAATTAG
TGGTTGAGACAGTTGAAAGGACTTTCAGAGTTGGAAGTGCGGCCAGAGGG
TCCTACGTTTTGTCAAAGCCCGGTGCGTCCTGAAGGTTTTAAGTCGATCT
TTCGAGTGGAGACACTTAACTACGAACAGAGGTAGAGAAAGAACGCCCAA
CGCAGGCCTATTGGCACGCACGGAGGTTCGATCGGCAGCCCGCGGCTCGA
GAGTGGCGCGTCCATACGGGACGCCCGGAATTCAAGCGGCGCATTTCAAG
CTAAGTTGCTCATTCTACGACCTCCTTTCGGGCATTTTTTGTCGCCGCAC
GTCTTCTGTCTTGTGCAGAAGGATTGGACGCTGGTGCTCTTTGAGTTTGG
AACCGAGGAACCTCGAGTGATTTGCAGCCGGGGGATGGACGGTAGCGACG
GCATCAATGGCCATCCCGCGCACGAGGTTGCAAGCGCCTACGACGACACA
CCCGGCGTCATCTTCTGGCATT GTAAGTTAAAGAGAGTTACTAGGTGTGC
TAAAGTTTCGACAGATTTCTTCCTGCGAAACGTTCGTCGCAGTGTGTCGT
GTCTCTTGAGGCAAGGTGTTTCCTAAGCTAACAGTGAACGACCATCAAAC
TCCGAGGCAGTACGTTATGGTTGAAGCCAACGCTTCGAAGCCTTTCAAGC
ATAGACTGATCGTCCGTCAAAGCTTCCGTTTAACTCGCGACTTTGTCGTC
GTAGAGAGAGAAATCTGTCTTTGAGTTGATACTGTTTGGCAACAGACCGG
ATGTACGGCTCCATTCAGTGTCCTTGAACGACAGTATTGCATGTCCACAG
GAGGGCCATCTTTTCAGAGCACTCGCAGCCTGCGAAAGCAATCATGAAAG
CAGTCGCCTTTCAACCTGCCTGCTGTCCTTGTTCAGGCGACCTTGAAGGC
ACTGGCAACGTTTCATACATCAACGCCTCTTCGTCGATATTTAGAATAGA
GTGCGGGTGCGCTTCTTCATTGGACTTCAATCGAGCCATGGGTCGAGAAA
ATGCGAACCAGCGCTCGCTAAGGACGACCCTGGTTCTTTTCTCTTTGAGC
ATGGCGATGGGGGTGGTGCTGGGCGCGCTGTAG GGTCGTCTTGACATCCG
TCGCTATATTTGTCGCCTTCGGGAGCGGGGGCGAAGCCCTTGAAGGCGAT
TGTTTGTAGAGCGGCGCCATCAACGTAACTTACTACAGGTTCCCTTTGTA
TGTTATGTGTCCTACTCGCTTTTGGCAAAACCAAACCGGGGGGTCAAATG
GAGATCGCGGCGAAATAACGATCACTGGCGCTGAGGTTGCGCTCGGGGAG
GGGGAGTGCTTGGAGATGGGGCTGCGGCCTGTTGCAGCAATAGTCCCCTG
AATCACGCGGGTCGGGGACACCCTGGCACAACCTTAAGGTTGATTTCTCG
GGTGAACTCAACTCTCTCTTCCCCGCTTCGCTGGAAAAGTCTCTGAAGCA
AGTCTCG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10041:2..4758-
>mRNA_Ecto-sp13_S_contig10041.64.1 ID=mRNA_Ecto-sp13_S_contig10041.64.1|Name=mRNA_Ecto-sp13_S_contig10041.64.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1707bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10041:2..4758- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGTACACCTTGTATTCGTGTCGCATGTCACGTCGTTTTCCATTGTTTG GTCTTCGCATGTTTGCTTCGCATGCTTTACGCCATCATCATTGCGCAGAC AAGCACACCCCGCTTCTCACCCCGTATCGTTCCAGGTGTACCAAACACCA TCCAACCTTGACTCAGCTCGCCGAGGGATTCTCGACGGAGCTAGAACGCA CATCAAGAACAATTTCGTGAACAGGGGCAGCACCGGGAGGGGGTTAGAAG ATGCTCGTGCTCTCCAGGACGCGTGTCCCAGTGGATCCCCCTTGTTCGTC TCGTCGTCGATGTTTCCTTCCGCTGAGGGGTGCTACGTGGCCTCGGACAC ACTGCTTTCAGGTGGAGAACCGGTATATTTCATCACGTCTGCAACGTCAC CTGGGCAAACCATTCTCGCGGCCCCAAAAGATCCAGACGACGACGACGAG GGACCACTTTTCTGGGGCGTGGCTTATGTGACGAGCAGTACCGCCGTCCT GCAGTGTGCGTCAGTAGAGGATGCGTCATTGGTGAACCCCGCGGATGCTG CATGGATGTGTGACGAAACGGGCACATCGAATTTTCAGACGGTCAGCAAC GACACGCTATTCTCGGTTAGTTGCGGCGGGTGTAGCACGGTTACCCCCGC TCCAACAGCAGCCACGACCGCGGCGCCTACGATCTTCGTCGGCGGCGAAG ACTGCGGGGCACTAACGGTGTCAGCGCCTTCGGCCCCCTACCTCGAAGGC TGCTACTTCGACACAAGGTTGACTCAGAGCTGGTACTCCGAGTTCGTGGA GGTCGAGTTGCCTAGCTTCACCCAAGATGGGTCTCTGGCGGCGGGGCAGC TCTGGATATCATGGTTGAGCTACGCTACGAACGAGACGTTCTGGGGCCTC TTCTTCTACCCCACTTTTACTTCCTCGAGCGAGCAATTGGTATCTGTCTA CTGCCTCTCGCAAGAAGAGGTAACGGAGGCTTATCCAGGGAATACAACCT GGGATTGTGATTTGGACGGGGACTACAGCACAACCTTTGGAATAGAGAAG ACGAAGTTTTCGGTCACGTGCGGCTGTGCTACGGGTAGCGCTCAAGGAGG CACGTTGTCAGAGTCTCCGACTCCAGCTCCAACTCCTGGTCCAACCCCTT CGCCGACCGTATCCGGCTGCATGGCCGGAGACCCGTTTCTGGTCACTCTT CCAGCTGTACCTCAGGTGGAGGGGTGTTATGTGGACTCCAACTTGAACGA TACAGCAGGATACCCCATCTACAGGTCCACTGGCGGCGCGGAGAGTGCCG ACGGACAAAGCTTCGTACTACCAACGGGAGATGGGCCTGTGGAGGAAACG TACTACAAGGATTGGACGCTGGTGCTCTTTGAGTTTGGAACCGAGGAACC TCGAGTGATTTGCAGCCGGGGGATGGACGGTAGCGACGGCATCAATGGCC ATCCCGCGCACGAGGTTGCAAGCGCCTACGACGACACACCCGGCGTCATC TTCTGGCATTGCGACCTTGAAGGCACTGGCAACGTTTCATACATCAACGC CTCTTCGTCGATATTTAGAATAGAGTGCGGGTGCGCTTCTTCATTGGACT TCAATCGAGCCATGGGTCGAGAAAATGCGAACCAGCGCTCGCTAAGGACG ACCCTGGTTCTTTTCTCTTTGAGCATGGCGATGGGGGTGGTGCTGGGCGC GCTGTAG back to top