prot_E-siliculosus-1a_F_contig107.496.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig107.496.1
Unique Nameprot_E-siliculosus-1a_F_contig107.496.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length284
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI)

HSP 1 Score: 544 bits (1401), Expect = 3.470e-195
Identity = 279/283 (98.59%), Postives = 282/283 (99.65%), Query Frame = 0 
Query:    1 MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSAGKDMGAPAPPSATSSNPYGGNYSAEEHKSGK 283
            MAMAQKPGKLVLKALAAL+PLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQD+ELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS GKDMGAPAPPSATSSNPYGGNYSAEE+KSGK
Sbjct:    1 MAMAQKPGKLVLKALAALIPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDAELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS-GKDMGAPAPPSATSSNPYGGNYSAEENKSGK 282
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BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Match: A0A6H5JL50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL50_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 5.170e-10
Identity = 44/156 (28.21%), Postives = 76/156 (48.72%), Query Frame = 0 
Query:   80 DQLKVAVMEIFGIESADDVVVDDSLTR------CTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPM 229
            D L+  +M++F +E         ++ +      C   + +  ++I N   +T SAA I++ Q++ +     TT     +A+S+  +DS L      L   SLG++V++ D +  V      +   D V   G D WWPW   L++  V+LCCICP+
Sbjct:  228 DALRAGIMDVFEVEQEQTEGTTGTVEKREVTEFCDDGSEEWTIAIGNEPSDTQSAAVISAGQMELVRSSEFTTL----LASSL--EDSNLSVNPAGLTYSSLGYIVLY-DEDQAVTTANSDSLDSDFVAFRGPDQWWPWXXXLLFGLVLLCCICPL 376
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FIZ7_ECTSI3.470e-19598.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JL50_9PHAE5.170e-1028.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 30..211
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..29
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 235..283
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..29
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 212..234
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..30
score: 0.664
NoneNo IPR availableTMHMMTMhelixcoord: 212..234
NoneNo IPR availableTMHMMTMhelixcoord: 10..32
NoneNo IPR availableTMHMMTMhelixcoord: 163..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig107contigE-siliculosus-1a_F_contig107:16146..21274 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig107.496.1mRNA_E-siliculosus-1a_F_contig107.496.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig107 15856..21274 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig107.496.1 ID=prot_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp
MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQ
TATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVV
DDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLD
DIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDV
VNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGG
SAGKDMGAPAPPSATSSNPYGGNYSAEEHKSGK*
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