mRNA_E-siliculosus-1a_F_contig107.496.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 2.690e-194 Identity = 279/283 (98.59%), Postives = 282/283 (99.65%), Query Frame = 3 Query: 291 MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSAGKDMGAPAPPSATSSNPYGGNYSAEEHKSGK 1139
MAMAQKPGKLVLKALAAL+PLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQD+ELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS GKDMGAPAPPSATSSNPYGGNYSAEE+KSGK
Sbjct: 1 MAMAQKPGKLVLKALAALIPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDAELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS-GKDMGAPAPPSATSSNPYGGNYSAEENKSGK 282 The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90) Total hits: 1 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.496.1 >prot_E-siliculosus-1a_F_contig107.496.1 ID=prot_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQback to top mRNA from alignment at E-siliculosus-1a_F_contig107:15856..21274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-siliculosus-1a_F_contig107.496.1 ID=mRNA_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5419bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:15856..21274+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:15856..21274+ >mRNA_E-siliculosus-1a_F_contig107.496.1 ID=mRNA_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:15856..21274+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)back to top |