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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.496.1 vs. uniprot
Match: D7FIZ7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ7_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 2.690e-194 Identity = 279/283 (98.59%), Postives = 282/283 (99.65%), Query Frame = 3
Query: 291 MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGSAGKDMGAPAPPSATSSNPYGGNYSAEEHKSGK 1139
MAMAQKPGKLVLKALAAL+PLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQD+ELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS GKDMGAPAPPSATSSNPYGGNYSAEE+KSGK
Sbjct: 1 MAMAQKPGKLVLKALAALIPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQTATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVVDDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLDDIATSINAQDAELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDVVNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGGS-GKDMGAPAPPSATSSNPYGGNYSAEENKSGK 282
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 852 |
| Model size | 1142 |
| Exons | 6 |
| Hectar predicted targeting category | signal peptide |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622927571.1913595-UTR-E-siliculosus-1a_F_contig107:15855..16145 | 1622927571.1913595-UTR-E-siliculosus-1a_F_contig107:15855..16145 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig107 15856..16145 + |
| 1696318591.232621-UTR-E-siliculosus-1a_F_contig107:15855..16145 | 1696318591.232621-UTR-E-siliculosus-1a_F_contig107:15855..16145 | Ectocarpus siliculosus Ec863f_EcPH12_90f female | UTR | E-siliculosus-1a_F_contig107 15856..16145 + |
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.496.1 >prot_E-siliculosus-1a_F_contig107.496.1 ID=prot_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=284bp
MAMAQKPGKLVLKALAALVPLMVLIGVSTSGNGMNGATSKAVDGAGRRLQ
TATYDFATQLEMTICLTEEHTSDSATSTTDQLKVAVMEIFGIESADDVVV
DDSLTRCTVDNWQRRVSIYNRADETGSAADIASAQVDQIYPGALTTAFLD
DIATSINAQDSELVFTGTDLDLLSLGFLVIWLDSNGDVVDNQGTTTSKDV
VNIGGTDVWWPWWAWLIYAAVVLCCICPMLFFFFKWRRDKEAELDSYGGG
SAGKDMGAPAPPSATSSNPYGGNYSAEEHKSGK* back to topmRNA from alignment at E-siliculosus-1a_F_contig107:15856..21274+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig107.496.1 ID=mRNA_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=5419bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:15856..21274+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
GTCTGTTGTCCATCACCTTGAGAAGAGCGAGACGCTGGAAATCGGGAAAA
TACGGCACCAGAAGAAAAGGGGAGGGACGTACGGAAAGGCTGTGGAAGGG
AAGCTCGTAAGCTCCCTGGAGAGCGAGAGCGAGAGAGCGAGAGAGAGAAC
GGGGGAGCGGGGTTGGCGAGGAATACAACCGATCGGAGCTTGTCGGACCT
CGGTGTGCAAAGGGAAGAATTTACACCTTGAGAGAGAAGTAGACGCCGCG
GGGACAGTGACATTTGCTTGGAGGAGGAACGCGCGGCGCCATGGCTATGG
CTCAGAAGCCGGGTAAATTGGTGCTGAAGGCCCTGGCAGCGCTCGTCCCG
TTGATGGTGCTTATTGGCGTGTCGACAAGTGGGAACGGGATGAACGGTGC
AACTTCTAAGGCCGTTGATGGGGCGGGGCGCCGATTGCAGACAGCAACGT
ACGACTTCGCCACACAGCTTGAGATGACAATTTGTCTCACGGAGGAACAC
ACCTCCGACTCGGCTACGTCAACCACTGATCAGGTACGCGATAAAACACG
ACATTATGTCGTGCATGGCACGCCATCTCTCGTCCTTCCACCGCCGGCCA
ATATGCGCGCGCTTCGCACTCTAGGCCTGCGTTATTTTCTGAAAGGAAAA
TATGCCGAGATTCCGCCTTCCCTACAATAGTACGCGCGCGCCAATCCAAC
CGCACCACGCTTCCTTGCTACAGCAGTAGAGAGGGATACTCAGTGGTGGG
GGTACGTTTGCTGAGAACGAGAGATCAGAGGGCATCACACGTGTTGCTAT
AGTGATACGTTGGCCACCTTATAAAACGTGGGAGTGTTCTTGGAAAAGGA
TCAACTTGTTCAAACACCTCACAGGCTCTGTGTGATTGTACATGGGCATA
TATGTATGCATCCACCAGTACAGCAGTAGTATAATAGTTCTTGTACCATA
CACCAATAAGGAGGCCCGATATAAGGCGGCGTAGTAGTGGCACAGGATGA
AACCGCCTTTATAGTGGCACAAGATTAGACCGGCCTTATATCGGACACCC
GGCCGTACATAGAATCGGCCCTGTATAAGGCCTGTCGGTACGGCCTTACA
GTCGGCGACCCTCAATACTGTAGCGGTAGGTAGTGACAAGAGGTGTTGGT
GCCGCTAAAGAAAGCAGTGCCGCTATTCTTATTAGGCATTGTACGTATGC
ATACTGACAAATCCATTTGTGCCAGGCGATTTCGGTGCCGCTACAGAGGG
CATTCCGCTATTGAGGGTACCGTTATTGAGGACCGCCAACTGTATTGAAG
ATTTACTTGCCTAGGCCATACGAAGCGCCACATGTGCTGTGTACGTAAGT
TGATTCGGTTCTTTGATATGCGTATTAGGAAAAAATAAATACTCTCACAG
AAAGACTACCCATTCGAGATATACCCACGTTCGAACGGGATGTGGTGAGT
CTTTGTATCACCTTCAAATCATGCTTCCCATCCAACCTTTTTTCGTCTGC
CAGATGCATGGTCAACCGGTACGCAATTATAATTCGGCAGACAACTGACA
GTCAAGTTGTCGTACATCCCATGTTATGTTGCGACCCCAAACCGACCACA
CACGGTAGCAGCGTCATGCCTTCTTGCCGTACTTCCGAGGTATGACTGGA
ACGGCACATGTAATGTAGTGGCACGGACTGCCCAATCCTGACAAACCCTA
CTGAAAAAAACGAGACCACCACCGACAAAGCAAACGCTACCATGACTCCT
CCCATCAGCTCATCACTTGTACGGAAATTCCCCCCCAAGTTCGCATGTCG
CGTGGGATGTGCGGTATGCGCTACGATCATCGCCATCTTAGCATCTTAGC
CCTCTGCAAGGTAGCGGCCTCGGCATCACCGCTTTCGAAACCAGCATCAC
TTCTACTGAGACCGGCCTTGTTGGGGACAGGCGGGGGGCCATAACCGGCC
GAACAGGGGGTGCCTGATATCTGTAAGGCCGCCACCGACCGCCACCGGCC
TTATGTCGGGCAGGCGGCCTTATATCGGGCACCCTACCGCTGTACAGACC
TAGAGAAATGTGCGAAGATGTGTTCCCATTGTGGGTACTGAGATTTATGT
ATTTTTGTCTTTCCTTCCTTCATGAGCTTTGAACGCATGAGCAGATGCCC
TATTGCCTGGACATCGGACAACAACGTTGACGACGGCGGGATGCATCTGT
CTTGTGCACGTGTGATACCAGCCGAGATCACACCGCAGACCCCCGCTTGT
TTCGGCTGACACACCTACGTTTTACAGCTGTATGGCGCTACTGTGCCGTG
CGCCTCAGAAGTGCATCGTATGTTTGTACACCAGAGTACGGGCATTACTA
GCACTACATGTACAGGGTTTGTTTTGGACAAGGCATTAGGTGTTTAATGT
TTCGACATCCACCTTGATTATAGACGACTTTTGCACCTTTCGGTAAAAAG
CACATGTGTTTGGACGCGCCACTCGGGTTCAGAAAGCAGGAAAATCACTC
AGGATGTTTGTTTTTTTTCTCCATCTCCCTCTGCGGTGCTTGCGGTAAGT
TTCATCGCGGTACCAATATAGTAATATTTGGTCGGTCCTTGGACGTGATT
CCTTTCCGATTTCCTTTCCTTTGTGGACCGTGAAGCCGAATCTCTGGTCA
TAACTTGTTATCCGCATTTGTTTGGACATAATCCGAGAATAGTACAGGAA
TCCCTTTTGTGGGTATGAGTGCGCCGAGATTCGAAACACCATGTCGTGTG
ATTTTAGCAACTGGTTCCGGGGGCGACTAATAGTTGCCTTTATTTCATGC
CAGCGGAGGTCATATTCATATCAATGACACAACCTCTCGCTCGGTTCCGA
AGGTCATCAGACCTCGCCTGTACCCGGCCGCTCTGCCGCTTAGCTACGAA
ATCATGCCGATCCACCTAAATAGAGCATTCACTGCTGTTACCTCGTTACC
GGGCAGTTGCGGCTCCTACCGGGCAGACACGTTGTGGGCGCTGATTTATA
GTGATGATCAAAGAAACAAATTGTTGACACTCATGGAAAGCGCAAGAGTT
CGGCTGATGGTACTGCTTTTTGAGCGGTTGCCTGCTGCCCAACACTGAAG
AAATAGTTGAACAGCAGTACGGAGTACTCAGGTCGTGCGTCTGCGTGCGG
AAATTTCCAAACTGAAAGTGGACGTCTACGGTTGATCGCTAACCCCCCAC
CCCCCCCTTTCAACTCGTTTGACACTTGGCATGGACCTGTCTTCCTTCCC
AGTTGAAGGTAGCTGTGATGGAGATATTCGGGATTGAGAGCGCTGACGAT
GTGGTGGTGGACGACTCGTTGACTAGATGCACGGTGGACAACTGGCAACG
GAGGGTGTCGATCTACAACAGGGCGGATGAGACGGGCTCCGCGGCGGACA
TTGCTTCGGCACAGGTAGGCAGATTTACGCCACCCACCCAGAGCACTCAT
GGGTGCAGGGCGTGCTACCCGGTTCGGTAGCATAGTTACCCATAGCACGT
ATTCCAAGCACGCCAGAGGAGAAGACGGTTGAGCGATAAAGATGTGGTAT
GCACATGCATACAATTCGATTGGCCTGCCTTAATGGACGATAGGCAGCAC
CTCCCCCACATGTTTTCTATCCCGCACGACGTCTGCAGAGCTTGATAGAT
CTGCACTTCTCACCTACTTCTCGCCTGATGACGTCGCCAATGCGCTGTTT
ACAATCCAGGTGGACCAAATCTACCCCGGAGCGTTGACGACAGCGTTCTT
GGACGACATTGCGACGTCCATCAATGCTCAGGATTCAGAGGTAAAGTCTC
ATCGAGTGGTATGGTTGTCACTTTTGGCTTGTGCGCTACGCACATCACAC
TGTGTTGCCTCAGCTGTTGTAGGTGCTATTTTAGAGTGGATGACTCCCGT
CGGTATTGTGTGACGGGGCTTTAGGGGTCGAGACTGAATTTTCTTCCCTA
AATGGCGCTCGCCACTGGCGCAGGTTTTTCGATACACCTCCATTCCAACA
TACGCCAACACGTTTGACGATGAGCGGAATGCGTTGTTCTTTGTAGCCCC
ACCTCAAGATGGAAATCCGAGCGTAACTTCTCCCCAGAGCTTGTCATGCT
GACCGTGTCTTGTCGTGTCTTGTTGGCCGGTTGCTTCTCTACGCAGCTTG
TCTTCACTGGGACCGACTTGGATTTGTTGAGCCTGGGGTTCTTGGTGATC
TGGCTTGATTCGAACGGGGACGTCGTGGACAACCAGGGCACGACTACGAG
CAAGGACGTGGTCAACATTGGGGGCACAGACGTCTGGTGGCCATGGTGAG
GAAGGAATTTTTGCGTTGTGTAGCATCGCGCCGGCGGCACCTCCTCCGTA
CATGGCGCTTGAGTAGTCTTAGAACCTACCTGCCTTGTGTTGTTCCTCAT
GTCTCGACGCTTTGTACTGCACTGCTTCCCATATCCTGCAGGTGGGCGTG
GTTGATCTACGCTGCGGTGGTGCTGTGCTGCATCTGCCCAATGCTCTTCT
TCTTCTTCAAATGGCGCCGGGACAAGGAGGCCGAACTGGACAGCTACGGC
GGTGGATCAGGTAAATGATTCACCCTGCAAGTTCGTAGGCTCTTGAGATC
TTGGTACCTACGGTCGATGCTGTAGGCTGTTCTGCAACGACGAGGTCAGA
AGATATTGGATCGTTTGGCGCAGACAACCGTGTGTCGTCGCCAGAGAAGG
CACCACGAAGGCGTCCAGTGTTCGATTCATGCTCCATTATAGCAACGACG
GCGTGTGGGTAGCTGTGTAGCCGTTTCGGTTGTTCGTACAATGACCTTCA
TTTCTGTAGGGATCAATCGGCATTCCTGAGGTGGGGCGCGAGTTGCGACT
TGCTTACAGTAGACGAATCATGATGACTTGATTGGGCGAGCGGGAGCATC
CTCTTTTCATGACTGCCGATGTTTGACTAGGTCTCATCTATTCAAGATCA
CTTGGAAAGAAACATGTTGCCAGACAACAACGGGATGTGTTCCACCGTAT
CGTTTTTTGTCACTGCAAGTATCGCTCGGTTTACTTGTTTTTTCGACAAT
TAGCGACTGTCGCGCGTGAGGTGATCAAATACGAGGTTGATTAGATCTGT
TTTCATTGGATAGGTGGGTGCCCACGTGAACCAGGCCGAACCAGGATTAC
GCTGCGACAGATGTTTTGCAACTGCAGATGCCTCAACAGCAGGCGGAACA
CCTCTCTCCTGGTTGATTCCGTTCATAGACATTTTCCTGTGCTAGACTAC
ATGTAGCTTCTCGCAAACCTGACTCACCCCATCCGGTCCCGTTCTTGTCA
TGTTGTTTTAATGATCTATAGCAGGTAAAGACATGGGGGCACCGGCTCCC
CCTTCGGCAACATCTTCCAACCCCTACGGCGGGAACTACTCCGCGGAGGA
GCACAAGAGCGGCAAGTGA back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:15856..21274+ >mRNA_E-siliculosus-1a_F_contig107.496.1 ID=mRNA_E-siliculosus-1a_F_contig107.496.1|Name=mRNA_E-siliculosus-1a_F_contig107.496.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1704bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:15856..21274+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTATGGCTCAGAAGCCGGGTAAATTGGTGCTGAAGGCCCTGGCAGC
GCTCGTCCCGTTGATGGTGCTTATTGGCGTGTCGACAAGTGGGAACGGGA
TGAACGGTGCAACTTCTAAGGCCGTTGATGGGGCGGGGCGCCGATTGCAG
ACAGCAACGTACGACTTCGCCACACAGCTTGAGATGACAATTTGTCTCAC
GGAGGAACACACCTCCGACTCGGCTACGTCAACCACTGATCAGATGGCTA
TGGCTCAGAAGCCGGGTAAATTGGTGCTGAAGGCCCTGGCAGCGCTCGTC
CCGTTGATGGTGCTTATTGGCGTGTCGACAAGTGGGAACGGGATGAACGG
TGCAACTTCTAAGGCCGTTGATGGGGCGGGGCGCCGATTGCAGACAGCAA
CGTACGACTTCGCCACACAGCTTGAGATGACAATTTGTCTCACGGAGGAA
CACACCTCCGACTCGGCTACGTCAACCACTGATCAGTTGAAGGTAGCTGT
GATGGAGATATTCGGGATTGAGAGCGCTGACGATGTGGTGGTGGACGACT
CGTTGACTAGATGCACGGTGGACAACTGGCAACGGAGGGTGTCGATCTAC
AACAGGGCGGATGAGACGGGCTCCGCGGCGGACATTGCTTCGGCACAGTT
GAAGGTAGCTGTGATGGAGATATTCGGGATTGAGAGCGCTGACGATGTGG
TGGTGGACGACTCGTTGACTAGATGCACGGTGGACAACTGGCAACGGAGG
GTGTCGATCTACAACAGGGCGGATGAGACGGGCTCCGCGGCGGACATTGC
TTCGGCACAGGTGGACCAAATCTACCCCGGAGCGTTGACGACAGCGTTCT
TGGACGACATTGCGACGTCCATCAATGCTCAGGATTCAGAGGTGGACCAA
ATCTACCCCGGAGCGTTGACGACAGCGTTCTTGGACGACATTGCGACGTC
CATCAATGCTCAGGATTCAGAGCTTGTCTTCACTGGGACCGACTTGGATT
TGTTGAGCCTGGGGTTCTTGGTGATCTGGCTTGATTCGAACGGGGACGTC
GTGGACAACCAGGGCACGACTACGAGCAAGGACGTGGTCAACATTGGGGG
CACAGACGTCTGGTGGCCATGCTTGTCTTCACTGGGACCGACTTGGATTT
GTTGAGCCTGGGGTTCTTGGTGATCTGGCTTGATTCGAACGGGGACGTCG
TGGACAACCAGGGCACGACTACGAGCAAGGACGTGGTCAACATTGGGGGC
ACAGACGTCTGGTGGCCATGGTGGGCGTGGTTGATCTACGCTGCGGTGGT
GCTGTGCTGCATCTGCCCAATGCTCTTCTTCTTCTTCAAATGGCGCCGGG
ACAAGGAGGCCGAACTGGACAGCTACGGCGGTGGATCAGGTGGGCGTGGT
TGATCTACGCTGCGGTGGTGCTGTGCTGCATCTGCCCAATGCTCTTCTTC
TTCTTCAAATGGCGCCGGGACAAGGAGGCCGAACTGGACAGCTACGGCGG
TGGATCAGCAGGTAAAGACATGGGGGCACCGGCTCCCCCTTCGGCAACAT
CTTCCAACCCCTACGGCGGGAACTACTCCGCGGAGGAGCACAAGAGCGGC
AAGTGACAGGTAAAGACATGGGGGCACCGGCTCCCCCTTCGGCAACATCT
TCCAACCCCTACGGCGGGAACTACTCCGCGGAGGAGCACAAGAGCGGCAA
GTGA back to top
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