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Homology
BLAST of mRNA_E-siliculosus-1a_F_contig107.495.1 vs. uniprot
Match: D7FIZ6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIZ6_ECTSI) HSP 1 Score: 817 bits (2110), Expect = 2.310e-292 Identity = 438/455 (96.26%), Postives = 445/455 (97.80%), Query Frame = 3
Query: 402 MPAARASSFSLNPWVARNWGLIIAAAVTVATVAFSLGTTASTSRFGAMTGAARVGQQSLYSSPKSRGGISVARAQRPSSIRPHGRVLQED-PTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGAAETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACCLXXXXXXXXXXQADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGKGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQSSGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS 1763
MPAARASS SLNPWVARNWGL+IAAA TVATVAFSLGTTASTSR GAMTG+ARVGQQSLY+SPKSRGGISVA+AQRPSS+RPHGRVLQE+ PTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAG ETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVAC XXXXXXXXXX ADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAG+GVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQ SGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS
Sbjct: 1 MPAARASSSSLNPWVARNWGLVIAAAATVATVAFSLGTTASTSRSGAMTGSARVGQQSLYASPKSRGGISVAQAQRPSSVRPHGRVLQEETPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEYSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGEVETVELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAWWVWLIYALLVACXXXXXXXXXXXXXADEKEAARDRLIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGRGVEPTAYRPSHRAGQQSVSAQAWMQEAGKKSAWAQPSGNSSRQGGGQSPVVRRFDIDDDDADDGVGKLRSKHPQYSFDVGRGGFNDRDGESKS 455
BLAST of mRNA_E-siliculosus-1a_F_contig107.495.1 vs. uniprot
Match: A0A835YQ53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ53_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 9.830e-16 Identity = 99/338 (29.29%), Postives = 143/338 (42.31%), Query Frame = 3
Query: 684 TPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEASLAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVEY----------SAAYAGSRDTT-----------PAVLAAQANDYVAYSSSQFKALLAGFINAEYAGAAETVELSA-----DDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIG-SDSSLWAWWVWLIYALLVACCLXXXXXXXXXXQADEKEAARDR--LIATRKGRGEEGLAKIRGPEWGITELDFEGDYDAYQSQEMKREYDGAGKGVEPTAYRPSH------RAGQQSV--SAQAWMQEAGKKSAWA 1586
TPI Y + +F+C V ++ V E+ + A+ ++ + ++V T Y C G QW V Y +A + +TT A++AND+V YS A F A YA A L A D+ + + GWI F + E A S+ + M +G + + +W W W+++AL V C +A E E + L+ RK EEGL KI G E+GIT LDF+G+Y+ Y+ +M+ EY GA A R SH AG +V SA AW E GKKS +A
Sbjct: 113 TPI-SYEAQFNMFICPTQAGVANSNVKAVTESHVRDAVLSLDAFGKPSLDAVSVGFTTYRA-----PYKCAIAGSTQWSVSVVYRDPSYYRRHLTAVATTATNTTLSAGYVDPSSNAVTRASEANDWVTYSFPNNST--ADFRTAFYAAVAAAAGLPAGAITYSDLQVQSSGWIARFSSSEGSVPPGSLAFSTPTM-MSVGIAGNEVWPAWAWVLFALAVLACALPLCMFILKKRAAEFEEEEEGYGLLKLRK---EEGLEKIHGNEFGITNLDFDGNYNDYEEPKMQDEYAGA---TAAAASRASHGHKRMDSAGTSTVDVSATAWSNEKGKKSNFA 435
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Start | 1 |
| Stop | 1 |
| Cds size | 1434 |
| Model size | 2285 |
| Exons | 5 |
| Ec32 ortholog | Ec-07_005010.1 |
| Ec32 ortholog description | expressed unknown protein |
| Hectar predicted targeting category | signal anchor |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-siliculosus-1a_F_contig107.495.1 >prot_E-siliculosus-1a_F_contig107.495.1 ID=prot_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=478bp
MARDELLKRSRRGAAVSARLVRTMPAARASSFSLNPWVARNWGLIIAAAV
TVATVAFSLGTTASTSRFGAMTGAARVGQQSLYSSPKSRGGISVARAQRP
SSIRPHGRVLQEDPTVITPIVEYGTKLQIFMCNPSLEVEGNDAHLVDEAS
LAAALSNISGIKQADEGDITVTIKTEPVDVDDVSYMCDTDGMLQWHAQVE
YSAAYAGSRDTTPAVLAAQANDYVAYSSSQFKALLAGFINAEYAGAAETV
ELSADDILIPTVGWIVTFPAEESVTQETHTAGSSDGLAMGIGSDSSLWAW
WVWLIYALLVACCLVPLCCCLRRRQADEKEAARDRLIATRKGRGEEGLAK
IRGPEWGITELDFEGDYDAYQSQEMKREYDGAGKGVEPTAYRPSHRAGQQ
SVSAQAWMQEAGKKSAWAQSSGNSSRQGGGQSPVVRRFDIDDDDADDGVG
KLRSKHPQYSFDVGRGGFNDRDGESKS* back to topmRNA from alignment at E-siliculosus-1a_F_contig107:12054..15703- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-siliculosus-1a_F_contig107.495.1 ID=mRNA_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=3650bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:12054..15703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CGGTCACTCGGGGTCGGGACACCGCACACCTCCTGCTGCGCGCGGATGAC
ATATACATCCACACACTCTCCTCCCCCCTTCTCCCACCCGCGCCTGAGCC
CACGCGCCCTTGCGTGCGATCGATAGGCAGGCCTCGACGACGTAGCACAC
GCACTTGTGACCCGACAGCAACACCCATCAACCAACCAGCGATCAACAAT
CCCACCGGACTCTTGTCTACGTGCCCATCGTGCTCAAACGTACCCGGTGC
GTTCGACTCCATTTCAGCGAGCTCGCGCTACATAGCCACCACCGCCACCA
CGCAGGCAGGGAGGAGGAACGCGGAGGCAAGCATGGCTCGGGATGAGTTG
CTAAAAAGGTCTCGCCGAGGCGCTGCTGTGTCGGCAAGACTCGTGAGGAC
AATGCCTGCGGCAAGGGCATCGTCATTTTCGTTGAACCCGTGGGTCGCTC
GAAACTGGGGGTTGATCATTGCGGCAGCAGTGACAGTGGCCACCGTCGCC
TTCTCGCTGGGGACGACGGCAAGCACCTCGAGGTTCGGTGCGATGACCGG
CGCTGCTCGCGTTGGACAGCAGTCTCTCTACTCGTCGCCGAAGAGCCGCG
GTGGCATTTCCGTCGCCCGCGCGCAGCGACCCTCCTCGATACGGCCGCAT
GGACGTGTGCTGCAAGAGGACCCCACTGTCATCACCCCCATTGTCGAGTA
CGGGACCAAGTTGCAGATCTTCATGTGCAATCCTAGCCTGGAAGTGGAGG
GAAACGACGCGCACCTGGTGGATGAGGCGAGCTTGGCCGCAGCACTCAGC
AATATCAGCGGAATCAAACAGGTGAGATTGATGCGGTGTCCCAAAATTTC
CAGTACTGAGGTACATGAGAAACTCCGCTTTAATTATTGATGCAACTTCA
GGGTCTCGCCGCCAAAACATCGTTCACAATTCACAACGGCCTTTTCCTCC
TTACATAGCAGCAGCAGCAGCAGCAGCAGCAGCCGATGCGTCGCAGACCT
GCGGTGTGTAGATACTACTGCCGTAGGCAAGAGCGACGCTACTCGGTAGG
ATGTAGCAGCAGCCGTAGAGGTACCAAAGCGACCCACAAATACATGTACG
AGCCAGTCCTACCGGACGTGCTGGCTGCCTCGCCAAACCCGCCTGGTTGC
TGTCGCAAACAGGTAACTACTTACGCTCATGTGCACCCCTCGGTACAATT
GCCTGATTTCTTCCCTTTCTACCACTGCTGTGCTGTGTACCGTACCAGGC
CGATGAAGGTGACATCACGGTGACGATCAAGACGGAGCCGGTGGATGTGG
ACGACGTAAGCTACATGTGCGACACGGACGGCATGCTGCAGTGGCACGCC
CAGGTCGAATACAGTGCGGCCTACGCCGGCTCGAGAGACACTACGCCGGC
CGTACTGGCAGCGCAGGCCAACGACTACGTGGCGTACTCGTCTTCCCAGT
TCAAGGCATTGCTGGCCGGATTCATCAATGCTGAGGTGAAAAAGCCCGGC
ACACGTCAAACTCAAAGTTGCCGCGCGAAGTTCAGGAGTTGTCGTTATCC
TTGTCGGGGTGGGCTTGCGACCATAGGGACTCTGTAGGCTTTTTTCCCTT
GGGGATAAGAGATACGGGATGGAAACTATGCTTTTTTTATTGGGAATTGG
AGAAAATTGGTGGTGTTTATTTAGCACTGTTGTTAATAGGTGGAGATATC
AATAATGACAAAATCCTGGTGGGTGATCACTGCGGATTCCTCGATGAGCG
TAGTGTAAAATAAAACATCGCTGGGTAGCAGATAAGAGTCAGATGAGGGC
ACGTGCCTGCTGGGCCAGCTTCAACAGTCTCGCGAAACAATGAGGAGAAC
AAACGTACGCGGAGTCTGTTTGTGTTGTCGAACAACCTCGCGCTGCTACT
TTGCTGCCGCGTTCGTAACAACAACAGTACGCGGGAGCAGCCGAGACGGT
TGAGCTATCTGCTGACGATATCTTGATCCCCACCGTGGGTTGGATCGTCA
CCTTCCCGGCGGAGGAGTCGGTCACGCAGGAGACCCACACCGCTGGCAGT
TCAGATGGACTTGCGATGGGGATTGGGAGCGACAGCAGTTTGTGGGCGTG
GTGGGTGTGGCTGATCTACGCGCTGCTGGTGGCGTGCTGCTTGGTGCCGC
TGTGTTGCTGCTTGCGCAGGAGGTAAGTGACTGGTGGCGGGTTGTGGATG
CGTTGCGTGGGTGTACGAGTAAACGACTATATTGTGGTTTACTATAGGGA
TGTGCGTCCCTGTCCCTGGCGCCCCTACCTACCTTGTCGGACGTTTGAGA
TGTGTGTTGTTTTCCGGCCAACGATTCCTAATTTCCTTCTGTACAGCTAT
GCCTCGTCCTGACTGTAGCTTGCCCCGGCTGCTCCCCCCCGCCTTGCATT
TTGGTGTATTTTGTTTGTCACGTGCACCTTCTTCCGTTCGATTGCCTGGC
CTGCTTGCAGGCAAGCGGACGAAAAGGAGGCTGCCAGGGACCGCTTGATT
GCTACTCGCAAGGGCCGAGGCGAAGAGGGCCTTGCCAAGATTCGCGGACC
GGAGTGGGGCATCACCGAGCTAGACTTCGAAGGAGACTACGACGCCTACC
AAAGCCAGGAGATGAAGCGCGAGTATGACGGCGCCGGAAAGGGCGTAGAA
CCGACGGCATACAGACCATCCCACAGGGCCGGCCAGCAGAGCGTCAGCGC
TCAAGCGTGGATGCAGGAGGTGAGTGATTCTTAGCGGAAGTCAAGTCAAG
CCATGGGATATCTTGGAGGGCCGTTTCGTTCTTTTCCTCCTGCTTCGGTT
AGGCCTGTAAAGCATGACTCACTCGCGCCTTCTCATTTTAAACGCTTCCT
CTATTCTTTCCTTGGCGTTGTGTTGCGACTGACTGCATTCCCCATGCCCG
CCGCCGGATTCACTCTTGTTTATTTAGGCTGGTAAAAAATCTGCCTGGGC
ACAGTCTTCCGGCAATTCGTCACGTCAAGGCGGTGGACAAAGCCCGGTGG
TGCGGCGTTTCGACATCGACGACGACGATGCTGACGATGGAGTAGGAAAG
CTTCGCAGCAAGCACCCCCAGTACAGCTTCGACGTAGGACGGGGAGGATT
CAATGATCGTGATGGCGAATCGAAGTCCTGACTCTTTGCAACGCATTTTT
ATAGGTTTTAATAATCGTGATGGGGATTCGAAATCCTGAGTTTTTAGGAG
TAATGGTGTGTGTTGTTGGTTGGGCGCAAGGGTGGAGTAGGGGTGGTAGT
ATCGAAGATGGACAAACTTCAGGATTTGGAAGCGCTGTTTCTCGAAGACG
GTGCTGGCGACGGTAGTGTTGAACGTTGAGCATATTGCAGGATCTCGAAT
TGCATCTTGCTTGGATTGAATGAACATATCCCACTGTATACAGAGAGCAG
CGTTTCCCCCTGTAAACAGAAAACAAATGTTTGCGTTCGGTGTTTCTTTG
CTGTTGTTGTTGTTGGTAGGTCGTTGGCTAAAGTTTATTTGGTGTATTTT
TTTATGCGGTTGACGTTTCCGGGCTGACCTTGCGTCTATTCTGTGAAGCG
ATGTGGTGTGTGTGCAGTGTAGACTTCATCGCCGTACCACATGCACAGCA
GTGGTGGGGGCAAACGGATAAGACATATCTGCCACGAGCAGTCCATACCC
back to topCoding sequence (CDS) from alignment at E-siliculosus-1a_F_contig107:12054..15703- >mRNA_E-siliculosus-1a_F_contig107.495.1 ID=mRNA_E-siliculosus-1a_F_contig107.495.1|Name=mRNA_E-siliculosus-1a_F_contig107.495.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=2868bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig107:12054..15703- (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
ATGGCTCGGGATGAGTTGCTAAAAAGGTCTCGCCGAGGCGCTGCTGTGTC
GGCAAGACTCGTGAGGACAATGCCTGCGGCAAGGGCATCGTCATTTTCGT
TGAACCCGTGGGTCGCTCGAAACTGGGGGTTGATCATTGCGGCAGCAGTG
ACAGTGGCCACCGTCGCCTTCTCGCTGGGGACGACGGCAAGCACCTCGAG
GTTCGGTGCGATGACCGGCGCTGCTCGCGTTGGACAGCAGTCTCTCTACT
CGTCGCCGAAGAGCCGCGGTGGCATTTCCGTCGCCCGCGCGCAGCGACCC
TCCTCGATACGGCCGCATGGACGTGTGCTGCAAGAGGACCCCACTGTCAT
CACCCCCATTGTCGAGTACGGGACCAAGTTGCAGATCTTCATGTGCAATC
CTAGCCTGGAAGTGGAGGGAAACGACGCGCACCTGGTGGATGAGGCGAGC
TTGGCCGCAGCACTCAGCAATATCAGCGGAATCAAACAGATGGCTCGGGA
TGAGTTGCTAAAAAGGTCTCGCCGAGGCGCTGCTGTGTCGGCAAGACTCG
TGAGGACAATGCCTGCGGCAAGGGCATCGTCATTTTCGTTGAACCCGTGG
GTCGCTCGAAACTGGGGGTTGATCATTGCGGCAGCAGTGACAGTGGCCAC
CGTCGCCTTCTCGCTGGGGACGACGGCAAGCACCTCGAGGTTCGGTGCGA
TGACCGGCGCTGCTCGCGTTGGACAGCAGTCTCTCTACTCGTCGCCGAAG
AGCCGCGGTGGCATTTCCGTCGCCCGCGCGCAGCGACCCTCCTCGATACG
GCCGCATGGACGTGTGCTGCAAGAGGACCCCACTGTCATCACCCCCATTG
TCGAGTACGGGACCAAGTTGCAGATCTTCATGTGCAATCCTAGCCTGGAA
GTGGAGGGAAACGACGCGCACCTGGTGGATGAGGCGAGCTTGGCCGCAGC
ACTCAGCAATATCAGCGGAATCAAACAGGCCGATGAAGGTGACATCACGG
TGACGATCAAGACGGAGCCGGTGGATGTGGACGACGTAAGCTACATGTGC
GACACGGACGGCATGCTGCAGTGGCACGCCCAGGTCGAATACAGTGCGGC
CTACGCCGGCTCGAGAGACACTACGCCGGCCGTACTGGCAGCGCAGGCCA
ACGACTACGTGGCGTACTCGTCTTCCCAGTTCAAGGCATTGCTGGCCGGA
TTCATCAATGCTGAGGCCGATGAAGGTGACATCACGGTGACGATCAAGAC
GGAGCCGGTGGATGTGGACGACGTAAGCTACATGTGCGACACGGACGGCA
TGCTGCAGTGGCACGCCCAGGTCGAATACAGTGCGGCCTACGCCGGCTCG
AGAGACACTACGCCGGCCGTACTGGCAGCGCAGGCCAACGACTACGTGGC
GTACTCGTCTTCCCAGTTCAAGGCATTGCTGGCCGGATTCATCAATGCTG
AGTACGCGGGAGCAGCCGAGACGGTTGAGCTATCTGCTGACGATATCTTG
ATCCCCACCGTGGGTTGGATCGTCACCTTCCCGGCGGAGGAGTCGGTCAC
GCAGGAGACCCACACCGCTGGCAGTTCAGATGGACTTGCGATGGGGATTG
GGAGCGACAGCAGTTTGTGGGCGTGGTGGGTGTGGCTGATCTACGCGCTG
CTGGTGGCGTGCTGCTTGGTGCCGCTGTGTTGCTGCTTGCGCAGGAGTAC
GCGGGAGCAGCCGAGACGGTTGAGCTATCTGCTGACGATATCTTGATCCC
CACCGTGGGTTGGATCGTCACCTTCCCGGCGGAGGAGTCGGTCACGCAGG
AGACCCACACCGCTGGCAGTTCAGATGGACTTGCGATGGGGATTGGGAGC
GACAGCAGTTTGTGGGCGTGGTGGGTGTGGCTGATCTACGCGCTGCTGGT
GGCGTGCTGCTTGGTGCCGCTGTGTTGCTGCTTGCGCAGGAGGCAAGCGG
ACGAAAAGGAGGCTGCCAGGGACCGCTTGATTGCTACTCGCAAGGGCCGA
GGCGAAGAGGGCCTTGCCAAGATTCGCGGACCGGAGTGGGGCATCACCGA
GCTAGACTTCGAAGGAGACTACGACGCCTACCAAAGCCAGGAGATGAAGC
GCGAGTATGACGGCGCCGGAAAGGGCGTAGAACCGACGGCATACAGACCA
TCCCACAGGGCCGGCCAGCAGAGCGTCAGCGCTCAAGCGTGGATGCAGGA
GGCAAGCGGACGAAAAGGAGGCTGCCAGGGACCGCTTGATTGCTACTCGC
AAGGGCCGAGGCGAAGAGGGCCTTGCCAAGATTCGCGGACCGGAGTGGGG
CATCACCGAGCTAGACTTCGAAGGAGACTACGACGCCTACCAAAGCCAGG
AGATGAAGCGCGAGTATGACGGCGCCGGAAAGGGCGTAGAACCGACGGCA
TACAGACCATCCCACAGGGCCGGCCAGCAGAGCGTCAGCGCTCAAGCGTG
GATGCAGGAGGCTGGTAAAAAATCTGCCTGGGCACAGTCTTCCGGCAATT
CGTCACGTCAAGGCGGTGGACAAAGCCCGGTGGTGCGGCGTTTCGACATC
GACGACGACGATGCTGACGATGGAGTAGGAAAGCTTCGCAGCAAGCACCC
CCAGTACAGCTTCGACGTAGGACGGGGAGGATTCAATGATCGTGATGGCG
AATCGAAGTCCTGAGCTGGTAAAAAATCTGCCTGGGCACAGTCTTCCGGC
AATTCGTCACGTCAAGGCGGTGGACAAAGCCCGGTGGTGCGGCGTTTCGA
CATCGACGACGACGATGCTGACGATGGAGTAGGAAAGCTTCGCAGCAAGC
ACCCCCAGTACAGCTTCGACGTAGGACGGGGAGGATTCAATGATCGTGAT
GGCGAATCGAAGTCCTGA back to top
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