mRNA_E-siliculosus-1a_F_contig10690.492.1 (mRNA) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-siliculosus-1a_F_contig10690.492.1
Unique NamemRNA_E-siliculosus-1a_F_contig10690.492.1
TypemRNA
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Match: D8LB83_ECTSI (WD-40 repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB83_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 2.090e-37
Identity = 132/158 (83.54%), Postives = 133/158 (84.18%), Query Frame = -1 
Query:    4 KGRSKREERSGLRLSDARGSFIGSSTPIKAAAAAGTGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXXEERARSLRGSDVGANSDPVQEKET 477
            KGR+KREERSGLRLSDARGSFIGSSTPIK   AA                 XXXXXXXXXXXXXXXX ASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXX   EERARSLRGSDVGANSDPVQ KET
Sbjct: 1142 KGRAKREERSGLRLSDARGSFIGSSTPIKDEMAA--------------EGEXXXXXXXXXXXXXXXXXASSFNYVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXS--EERARSLRGSDVGANSDPVQGKET 1283
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BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Match: A0A6H5KB05_9PHAE (UDENN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB05_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 1.430e-32
Identity = 137/186 (73.66%), Postives = 144/186 (77.42%), Query Frame = -1 
Query:    4 RRKSDGGGRARSTSGEGSGTKGRSKREERSGLRLSDARGSFIGSSTPIKAAAAAGTGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGASSFN--------YVRRRTSASEEGEVCYDSAGDWASDGSDGLPAVLANRXXXXXXXXXXXXXXXXXXXXXXXXEERARSLRGSDVGANSDPVQEKET 537
            RRKSDGG RAR+TSGEGSGTKGR K+EERSGLRLSDARGSFIGSS PIKAA        XXXXXXXXXXXXXXXXXXXXXXXXXXXX              +V    SAS+E EVCYDSAGDWASDGSDGLPAVLAN+      XXXXXXXXXXXXXX    EERARS +GSDV ANSDPVQEKE+
Sbjct: 1157 RRKSDGGWRARATSGEGSGTKGRGKQEERSGLRLSDARGSFIGSSAPIKAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFVXXXXSASQEEEVCYDSAGDWASDGSDGLPAVLANQRRSATAXXXXXXXXXXXXXXWGS-EERARSWKGSDVDANSDPVQEKES 1341
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig10690.492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB83_ECTSI2.090e-3783.54WD-40 repeat protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5KB05_9PHAE1.430e-3273.66UDENN domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig10690contigE-siliculosus-1a_F_contig10690:118..656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-19
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Properties
Property NameValue
Start0
Stop0
Cds size537
Model size539
Exons1
Hectar predicted targeting categoryother localisation
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927570.6060402-CDS-E-siliculosus-1a_F_contig10690:117..6541622927570.6060402-CDS-E-siliculosus-1a_F_contig10690:117..654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10690 118..654 +
1696318590.922521-CDS-E-siliculosus-1a_F_contig10690:117..6541696318590.922521-CDS-E-siliculosus-1a_F_contig10690:117..654Ectocarpus siliculosus Ec863f_EcPH12_90f femaleCDSE-siliculosus-1a_F_contig10690 118..654 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig10690.492.1prot_E-siliculosus-1a_F_contig10690.492.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalepolypeptideE-siliculosus-1a_F_contig10690 118..654 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-siliculosus-1a_F_contig10690.492.1

>prot_E-siliculosus-1a_F_contig10690.492.1 ID=prot_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=179bp
LRFFLLDRVAVCTDVASSQRSGTFFATPGRRRPVRRRWRRLVVRRGGPPP
IGKHRRQPVAPVRSPVPRRVVAHLSLLACRGASSDVVERRRPGAAPSKVS
APAATAIFFLPLGRHLVLLLRAAGASSSSSLDRRAAPDEAPAGVRQPQAR
PFLPLRAPLGPAALSGRRTGAPTAVAFSP
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mRNA from alignment at E-siliculosus-1a_F_contig10690:118..656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-siliculosus-1a_F_contig10690.492.1 ID=mRNA_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=mRNA|length=539bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10690:118..656+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCGTTTCTTTCTCCTGGACCGGGTCGCTGTTTGCACCGACGTCGCTTC
CTCTCAACGATCTGGCACGTTCTTCGCTACCCCCGGCCGCCGCCGTCCCG
TCCGTCGCCGGTGGAGGCGCCTCGTCGTCCGCCGCGGCGGACCTCCTCCG
ATTGGCAAGCACCGCCGGCAACCCGTCGCTCCCGTCCGAAGCCCAGTCCC
CCGCCGAGTCGTAGCACACCTCTCCCTCCTCGCTTGCCGAGGTGCGTCTT
CTGACGTAGTTGAACGACGACGCCCCGGAGCCGCGCCGTCGAAGGTCTCC
GCCCCCGCCGCCACCGCTATCTTCTTCCTCCCCCTCGGCCGCCATCTCGT
CCTGCTCCTCCGCGCGGCCGGTGCCAGCAGCAGCAGCAGCCTTGATCGGC
GTGCTGCTCCCGATGAAGCTCCCGCGGGCGTCCGACAGCCTCAAGCCCGA
CCTTTCCTCCCGCTTCGAGCGCCCCTTGGTCCCGCTGCCCTCTCCGGACG
TCGAACGGGCGCGCCCACCGCCGTCGCTTTTTCGCCGGG
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Coding sequence (CDS) from alignment at E-siliculosus-1a_F_contig10690:118..656+

>mRNA_E-siliculosus-1a_F_contig10690.492.1 ID=mRNA_E-siliculosus-1a_F_contig10690.492.1|Name=mRNA_E-siliculosus-1a_F_contig10690.492.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=CDS|length=1074bp|location=Sequence derived from alignment at E-siliculosus-1a_F_contig10690:118..656+ (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
CTGCGTTTCTTTCTCCTGGACCGGGTCGCTGTTTGCACCGACGTCGCTTC
CTCTCAACGATCTGGCACGTTCTTCGCTACCCCCGGCCGCCGCCGTCCCG
TCCGTCGCCGGTGGAGGCGCCTCGTCGTCCGCCGCGGCGGACCTCCTCCG
ATTGGCAAGCACCGCCGGCAACCCGTCGCTCCCGTCCGAAGCCCAGTCCC
CCGCCGAGTCGTAGCACACCTCTCCCTCCTCGCTTGCCGAGGTGCGTCTT
CTGACGTAGTTGAACGACGACGCCCCGGAGCCGCGCCGTCGAAGGTCTCC
GCCCCCGCCGCCACCGCTATCTTCTTCCTCCCCCTCGGCCGCCATCTCGT
CCTGCTCCTCCGCGCGGCCGGTGCCAGCAGCAGCAGCAGCCTTGATCGGC
GTGCTGCTCCCGATGAAGCTCCCGCGGGCGTCCGACAGCCTCAAGCCCGA
CCTTTCCTCCCGCTTCGAGCGCCCCTTGGTCCCGCTGCCCTCTCCGGACG
TCGAACGGGCGCGCCCACCGCCGTCGCTTTTTCGCCGCTGCGTTTCTTTC
TCCTGGACCGGGTCGCTGTTTGCACCGACGTCGCTTCCTCTCAACGATCT
GGCACGTTCTTCGCTACCCCCGGCCGCCGCCGTCCCGTCCGTCGCCGGTG
GAGGCGCCTCGTCGTCCGCCGCGGCGGACCTCCTCCGATTGGCAAGCACC
GCCGGCAACCCGTCGCTCCCGTCCGAAGCCCAGTCCCCCGCCGAGTCGTA
GCACACCTCTCCCTCCTCGCTTGCCGAGGTGCGTCTTCTGACGTAGTTGA
ACGACGACGCCCCGGAGCCGCGCCGTCGAAGGTCTCCGCCCCCGCCGCCA
CCGCTATCTTCTTCCTCCCCCTCGGCCGCCATCTCGTCCTGCTCCTCCGC
GCGGCCGGTGCCAGCAGCAGCAGCAGCCTTGATCGGCGTGCTGCTCCCGA
TGAAGCTCCCGCGGGCGTCCGACAGCCTCAAGCCCGACCTTTCCTCCCGC
TTCGAGCGCCCCTTGGTCCCGCTGCCCTCTCCGGACGTCGAACGGGCGCG
CCCACCGCCGTCGCTTTTTCGCCG
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