prot_E-siliculosus-1a_F_contig1069.486.1 (polypeptide) Ectocarpus siliculosus Ec863f_EcPH12_90f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-siliculosus-1a_F_contig1069.486.1
Unique Nameprot_E-siliculosus-1a_F_contig1069.486.1
Typepolypeptide
OrganismEctocarpus siliculosus Ec863f_EcPH12_90f female (Ectocarpus siliculosus Ec863f_EcPH12_90f female)
Sequence length245
Homology
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BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: D8LRK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRK1_ECTSI)

HSP 1 Score: 457 bits (1177), Expect = 2.880e-162
Identity = 222/244 (90.98%), Postives = 232/244 (95.08%), Query Frame = 0 
Query:    1 MDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 244
            MDSAEGG+DYYDSGDE GNDLG VMKENPSLW MFIMAYL++WV GLAFSSTCFNRSRFYRGGLCM+GHNPI+R+IFVPFLVL+VVPAFGIFTAPVM CW LCR+CFLLG VDC+FPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWL KRKLRDLCGITRVMTA+DPLATAGNEPSVG Q IADIEL EQGTYD EFAQAVVSVAGIMEEGIFRGITLYL
Sbjct:    5 MDSAEGGSDYYDSGDEQGNDLGDVMKENPSLWAMFIMAYLVVWVQGLAFSSTCFNRSRFYRGGLCMQGHNPISRMIFVPFLVLVVVPAFGIFTAPVMTCWSLCRVCFLLGRVDCDFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLCKRKLRDLCGITRVMTADDPLATAGNEPSVGAQGIADIELNEQGTYDQEFAQAVVSVAGIMEEGIFRGITLYL 248
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BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Match: A0A6H5JF96_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF96_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.160e-51
Identity = 110/243 (45.27%), Postives = 118/243 (48.56%), Query Frame = 0 
Query:    2 DSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFSSTCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCWLLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVMLRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPSVGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL 244
            DSAEGG+DYYDSGDEHGNDLG VMKEN S                      C NRSRFYRGGLCMKGHNPI+RVI +                                                                              + LA         WL +RKLRD CGITRVMTA+DPL  AGNEPSVG Q IA IELYEQGTYD EFAQAV+SVA IMEEG+F  ITLYL
Sbjct:    6 DSAEGGSDYYDSGDEHGNDLGDVMKENRS--------------------DKCLNRSRFYRGGLCMKGHNPISRVIMI------------------------------------------------------------------------------LSLA---------WLCERKLRDPCGITRVMTADDPLGIAGNEPSVGAQGIAGIELYEQGTYDQEFAQAVISVAAIMEEGVFCEITLYL 141
The following BLAST results are available for this feature:
BLAST of mRNA_E-siliculosus-1a_F_contig1069.486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRK1_ECTSI2.880e-16290.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF96_9PHAE5.160e-5145.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 52..71
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..30
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 31..51
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 123..244
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 72..92
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 93..97
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 98..122
NoneNo IPR availableTMHMMTMhelixcoord: 75..97
NoneNo IPR availableTMHMMTMhelixcoord: 32..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-siliculosus-1a_F_contig1069contigE-siliculosus-1a_F_contig1069:3449..5403 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus siliculosus 1a female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus siliculosus 1a female vs UniRef902022-09-16
OGS1.0 of Ectocarpus siliculosus Ec863f_EcPH12_90f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-siliculosus-1a_F_contig1069.486.1mRNA_E-siliculosus-1a_F_contig1069.486.1Ectocarpus siliculosus Ec863f_EcPH12_90f femalemRNAE-siliculosus-1a_F_contig1069 3290..6963 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-siliculosus-1a_F_contig1069.486.1 ID=prot_E-siliculosus-1a_F_contig1069.486.1|Name=mRNA_E-siliculosus-1a_F_contig1069.486.1|organism=Ectocarpus siliculosus Ec863f_EcPH12_90f female|type=polypeptide|length=245bp
MDSAEGGTDYYDSGDEHGNDLGVVMKENPSLWGMFIMAYLMMWVTGLAFS
STCFNRSRFYRGGLCMKGHNPIARVIFVPFLVLIVVPAFGIFTAPVMMCW
LLCRICFLLGGVDCNFPAGWLMRPPQRRRHLSNFPSGRERRWKRRGWLVM
LRARHQIFLAQLQQNDSQPWLSKRKLRDLCGITRVMTANDPLATAGNEPS
VGTQRIADIELYEQGTYDPEFAQAVVSVAGIMEEGIFRGITLYL*
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